genome.fa.s7.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  200  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63944608--63944713	54	2.0	54	94	0	185	27	16	16	40	1.89
63950179--63950285	25	4.3	25	81	0	133	30	18	28	21	1.97
63963286--63963404	25	4.8	25	80	6	116	34	14	28	22	1.93
63970649--63970890	40	6.1	40	87	2	312	23	28	23	24	2.00
63978803--63979032	40	5.8	40	85	4	261	24	26	23	24	2.00
63978792--63979032	78	3.0	82	79	13	254	24	26	23	24	2.00
63996438--63996504	31	2.2	31	91	0	107	47	7	7	37	1.60
64009549--64009589	18	2.3	18	95	0	73	34	9	12	43	1.75
64016125--64016496	105	3.6	104	93	3	622	19	20	30	30	1.97
64023709--64023938	104	2.2	103	94	2	399	17	20	30	31	1.96
64028211--64028423	27	7.9	27	79	12	224	34	21	24	19	1.96
64028229--64028423	54	3.6	54	91	1	320	34	22	24	18	1.96
64030042--64030201	26	6.2	26	91	0	266	37	24	6	31	1.80
64030042--64030201	52	3.1	52	97	0	293	37	24	6	31	1.80
64030648--64030799	67	2.3	67	81	9	175	31	16	30	21	1.95
64034339--64034419	42	1.9	42	84	0	108	19	22	34	23	1.96
64037094--64037193	49	2.0	49	98	0	191	33	24	18	25	1.97
64046528--64046694	46	3.6	46	82	6	169	31	19	26	22	1.98
64047545--64047577	14	2.4	14	100	0	66	45	15	6	33	1.70
64052408--64052832	47	8.9	47	91	2	663	32	8	30	29	1.87
64052408--64052832	96	4.5	94	91	2	663	32	8	30	29	1.87
64052408--64052832	143	3.0	142	92	3	692	32	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64052951--64053029	37	2.1	37	88	4	115	25	18	30	25	1.98
64057865--64058167	40	7.6	40	87	1	439	23	23	26	26	2.00
64060447--64060509	26	2.5	25	77	15	67	65	3	7	23	1.34
64069019--64069165	40	3.7	40	83	5	120	25	27	21	25	2.00
64069065--64069245	80	2.3	80	83	9	219	27	27	20	23	1.99
64069062--64069245	40	4.6	40	81	7	196	28	27	20	23	1.99
64076858--64077004	40	3.7	40	83	5	120	25	27	21	25	2.00
64076904--64077084	80	2.3	80	83	9	219	27	27	20	23	1.99
64076901--64077084	40	4.6	40	81	7	196	28	27	20	23	1.99
64097554--64097625	37	1.9	37	94	0	126	27	30	19	22	1.98
64097719--64097912	47	4.1	47	89	0	289	26	29	11	32	1.92
64101578--64101645	24	2.7	26	75	6	77	25	19	17	38	1.93
64107113--64107231	46	2.6	45	88	7	161	25	29	15	29	1.96
64110843--64110872	10	3.0	10	95	0	51	63	10	0	26	1.26
64113983--64114153	93	1.8	93	88	0	261	28	26	20	23	1.99
64113976--64114189	46	4.6	46	75	5	216	29	27	19	23	1.98
64119358--64119543	67	2.8	66	80	8	171	30	15	30	23	1.95
64119382--64119553	67	2.7	64	79	7	204	27	16	30	25	1.96
64125110--64125324	46	4.7	46	79	5	236	31	27	19	21	1.98
64125118--64125287	93	1.8	93	90	0	277	30	27	20	21	1.98
64125110--64125328	93	2.4	91	78	7	253	31	27	19	21	1.97
64134671--64134781	55	2.0	55	85	0	150	26	28	28	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64135245--64135296	27	1.9	27	84	0	68	34	15	9	40	1.80
64138150--64138301	27	5.6	27	92	3	232	26	13	28	30	1.94
64138150--64138301	55	2.8	55	93	0	250	26	13	28	30	1.94
64146211--64146294	27	3.1	27	84	5	107	33	22	22	21	1.97
64155429--64155502	29	2.6	29	89	4	105	25	16	32	25	1.96
64553276--64553430	28	5.5	28	87	5	206	32	27	12	27	1.92
64553286--64553401	58	2.0	57	94	1	205	33	24	12	29	1.92
64561385--64561538	28	5.5	28	89	1	211	33	27	12	27	1.92
64563836--64563862	14	1.9	14	100	0	54	55	29	0	14	1.40
64564543--64564684	59	2.4	59	87	1	203	38	40	11	9	1.76
64565046--64565109	27	2.4	27	91	0	101	17	37	28	17	1.92
64571566--64572286	376	1.9	378	96	0	1338	31	7	19	42	1.79
64572933--64573150	43	5.1	43	81	5	244	27	17	25	29	1.97
64578050--64578081	16	2.0	16	93	0	55	34	18	0	46	1.49
64578292--64578556	50	5.3	50	81	2	325	29	24	17	27	1.98
64580494--64580540	19	2.3	20	82	10	60	48	14	0	36	1.44
64583059--64583099	15	2.7	16	88	11	68	51	14	19	14	1.77
64586573--64586757	50	3.7	49	80	5	201	31	25	16	27	1.96
64586582--64586764	100	1.8	100	91	2	305	30	25	16	27	1.97
64589721--64589760	20	2.0	20	85	0	53	40	10	7	42	1.67
64592987--64593135	40	3.7	40	88	5	169	25	20	26	27	1.99
64601098--64601209	40	2.8	40	87	2	154	27	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64601114--64601253	40	3.5	40	85	6	160	23	19	27	30	1.98
64603603--64603645	17	2.5	18	77	11	54	27	16	11	44	1.82
64612119--64612143	13	1.9	13	100	0	50	32	20	0	48	1.50
64615530--64616124	297	2.0	298	94	1	1050	32	12	22	31	1.92
64619696--64619836	41	3.5	39	73	19	110	28	26	21	23	1.99
64619756--64619836	42	1.9	42	87	5	119	29	23	19	27	1.98
64621356--64621657	49	6.3	48	94	2	502	31	29	7	32	1.85
64621356--64621657	143	2.1	144	94	1	534	31	29	7	32	1.85
64632110--64632256	41	3.6	40	77	11	138	27	28	21	21	1.99
64641751--64641888	67	2.1	67	85	0	186	20	28	21	29	1.98
64644602--64644721	43	2.8	42	82	2	159	32	14	24	29	1.94
64664412--64664641	40	5.8	40	89	2	304	24	23	28	24	2.00
64671199--64671374	39	4.5	39	82	7	178	25	21	28	25	1.99
64671199--64671427	40	5.8	40	81	6	207	25	22	27	24	2.00
64677553--64677615	27	2.3	27	86	0	81	38	19	14	28	1.90
64679225--64679287	28	2.3	27	86	7	92	46	14	7	31	1.73
64684636--64684836	96	2.1	97	96	0	368	24	30	22	22	1.99
64686598--64686738	40	3.5	38	81	6	147	24	16	26	31	1.96
64686708--64686786	42	1.9	42	89	2	124	26	10	26	36	1.88
64688080--64688127	17	3.1	17	74	17	50	37	0	25	37	1.56
64690237--64690264	12	2.3	12	100	0	56	21	10	14	53	1.70
64690264--64690292	10	2.9	10	100	0	58	17	0	10	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64695380--64695564	40	4.7	40	78	6	180	25	27	22	25	2.00
64695408--64695560	79	1.9	80	82	6	195	24	26	21	26	1.99
64698957--64699052	24	4.0	24	89	6	142	29	21	20	28	1.98
64698978--64699050	23	3.1	23	96	2	128	30	20	20	28	1.98
64699101--64699167	20	3.3	20	93	0	116	32	20	11	34	1.90
64699101--64699156	11	5.5	11	71	16	57	32	19	12	35	1.89
64704084--64704145	28	2.2	28	88	2	90	22	25	4	46	1.71
64704315--64704406	45	2.0	45	95	0	166	26	23	10	39	1.88
64707970--64708023	26	2.0	27	85	3	74	31	20	20	27	1.97
64708014--64708183	27	6.3	27	81	2	121	41	22	6	28	1.79
64708027--64708184	54	2.9	54	83	3	201	41	21	6	30	1.78
64708139--64708240	27	3.8	28	81	10	104	46	20	5	27	1.74
64708030--64708240	54	3.9	52	80	6	165	42	20	7	29	1.79
64710456--64710480	8	3.1	8	100	0	50	52	0	24	24	1.48
64710841--64711013	43	4.0	43	74	7	154	24	16	24	34	1.96
64727013--64727080	22	3.2	22	63	12	61	42	26	7	23	1.80
64727003--64727089	41	2.1	41	97	0	165	42	25	8	24	1.81
64745257--64745324	22	3.2	22	63	12	61	42	26	7	23	1.80
64745247--64745333	41	2.1	41	97	0	165	42	25	8	24	1.81
64784018--64784155	43	3.2	43	74	12	133	28	18	21	30	1.97
64787141--64787419	48	5.9	47	71	9	185	25	27	20	26	1.99
64787236--64787424	96	2.0	97	86	1	263	25	26	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64791868--64791903	18	2.0	18	100	0	72	22	22	22	33	1.97
64797361--64797508	48	3.1	47	71	7	136	26	23	19	30	1.98
64798592--64798616	13	1.9	13	100	0	50	56	12	0	32	1.36
64799730--64799776	18	2.6	18	82	0	67	48	14	12	23	1.78
64800105--64800409	27	11.3	27	87	1	414	41	18	14	26	1.88
64803550--64803586	17	2.1	18	90	5	58	64	0	0	35	0.94
64806266--64806773	47	10.7	47	96	1	874	30	8	29	30	1.87
64806891--64806969	37	2.1	37	88	0	113	24	17	31	26	1.97
64810527--64810592	33	2.0	33	81	0	78	27	22	19	30	1.98
64810775--64810856	27	3.0	27	83	0	92	36	19	21	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290