genome.fa.s7.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  152  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48657826--48657885	28	2.1	28	81	0	66	33	3	10	53	1.51
48658696--48658728	16	2.1	15	94	5	57	42	24	6	27	1.78
48663152--48663207	28	2.0	28	100	0	112	28	25	3	42	1.71
48666410--48666458	25	2.0	25	84	8	64	42	6	8	42	1.59
48680662--48680785	44	2.9	43	77	7	142	24	14	27	33	1.94
48681826--48681926	51	2.0	51	98	0	193	35	17	19	26	1.95
48685871--48685895	13	1.9	13	100	0	50	20	0	0	80	0.72
48687551--48687749	53	3.7	54	81	6	215	23	25	16	34	1.95
48687562--48687751	55	3.5	53	82	6	222	23	24	17	34	1.96
48687737--48687858	47	2.6	47	92	5	210	26	24	13	36	1.92
48690379--48690408	15	2.0	15	93	0	51	36	0	10	53	1.35
48692047--48692491	132	3.4	131	79	3	421	35	15	20	28	1.93
48692311--48692556	132	1.9	132	86	5	354	34	16	18	30	1.93
48693550--48693578	7	4.1	7	100	0	58	58	13	0	27	1.36
48698092--48698223	45	3.0	45	84	5	164	23	23	31	21	1.99
48705864--48705910	25	2.0	25	83	8	62	27	14	4	53	1.60
48706171--48706428	46	6.0	45	79	14	294	23	24	15	37	1.93
48706258--48706417	38	4.0	38	84	12	230	24	25	16	34	1.95
48706215--48706428	84	2.5	84	96	0	401	24	24	15	35	1.94
48708547--48708597	24	2.1	24	85	7	68	56	3	1	37	1.29
48708559--48708626	30	2.3	29	82	12	77	57	2	1	38	1.23
48709919--48709951	15	2.1	16	88	5	50	6	54	39	0	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48709980--48710028	25	2.0	25	84	4	64	63	8	0	28	1.23
48709992--48710056	25	2.9	23	80	15	66	66	7	0	26	1.19
48710018--48710056	19	2.0	20	90	5	62	71	7	0	20	1.10
48710248--48710295	17	2.8	17	70	0	51	64	0	0	35	0.94
48712232--48712291	10	6.0	10	81	11	70	21	10	1	66	1.30
48713008--48713041	18	1.9	18	94	5	61	26	5	2	64	1.30
48714857--48714917	10	6.9	9	82	14	58	21	1	1	75	0.98
48716510--48716569	10	6.0	10	84	11	79	21	8	1	68	1.25
48722226--48722268	3	14.3	3	100	0	86	32	0	0	67	0.91
48723599--48723686	25	3.7	25	69	17	71	46	5	1	46	1.34
48723607--48723680	22	3.4	22	73	14	73	44	5	1	48	1.34
48723838--48723866	2	15.0	2	92	7	51	51	0	0	48	1.00
48726844--48726896	23	2.4	22	76	20	56	9	18	1	69	1.25
48731885--48731946	29	2.2	28	83	11	74	20	37	1	40	1.63
48733775--48733821	22	2.2	21	82	14	53	57	4	4	34	1.38
48734170--48734218	20	2.5	20	83	6	55	57	2	0	40	1.10
48734163--48734225	13	5.2	13	78	20	55	58	3	0	38	1.14
48734134--48734227	11	8.1	12	74	19	60	58	3	2	36	1.26
48734407--48734474	12	5.7	12	79	6	66	55	4	5	33	1.44
48736219--48737531	44	30.0	44	80	9	1085	23	30	17	29	1.97
48736306--48737531	175	7.0	172	85	5	1211	23	30	17	29	1.97
48736395--48737499	438	2.5	438	95	0	1978	23	30	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48739364--48739390	13	2.1	13	100	0	54	29	18	22	29	1.97
48745654--48745693	18	2.2	19	86	13	57	45	7	20	27	1.78
48750041--48750087	22	2.2	21	82	14	53	57	4	4	34	1.38
48750400--48750468	25	2.9	23	71	12	59	66	2	1	28	1.14
48750442--48750489	9	5.3	9	85	7	55	62	2	0	35	1.07
48750673--48750764	12	7.9	11	72	14	60	55	3	7	33	1.44
48759674--48759716	16	2.7	16	85	0	59	27	2	18	51	1.59
48765071--48765095	13	1.9	13	100	0	50	32	4	24	40	1.73
48772357--48772447	46	2.0	46	91	0	146	27	30	7	34	1.85
48772421--48772866	47	9.5	47	91	0	689	24	28	13	33	1.93
48772839--48772889	22	2.3	22	96	0	93	21	35	15	27	1.94
48776827--48776922	28	3.4	28	72	2	84	31	26	20	21	1.98
48776954--48777606	40	16.3	40	93	1	1022	25	28	21	24	1.99
48780865--48780996	57	2.3	57	83	3	160	27	28	20	23	1.99
48781007--48781479	40	11.9	40	91	2	731	24	28	22	24	2.00
48781460--48781502	21	2.0	21	95	0	77	30	34	13	20	1.92
48781420--48781540	61	2.0	61	95	0	215	27	32	19	21	1.97
48781380--48781582	101	2.0	101	93	0	343	26	30	20	22	1.98
48781340--48781622	141	2.0	141	95	0	512	26	30	20	22	1.99
48781309--48781654	181	1.9	181	97	0	656	25	29	21	22	1.99
48781481--48781655	40	4.4	40	97	0	314	25	29	22	22	1.99
48783361--48783451	46	2.0	46	86	0	128	28	29	7	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48783468--48783636	22	7.3	22	64	31	77	24	27	13	34	1.92
48783466--48783757	47	6.2	47	93	0	485	25	27	12	34	1.92
48790198--48790260	33	1.9	33	96	0	117	28	7	31	31	1.86
48793689--48794046	47	7.6	47	93	3	585	32	8	29	29	1.87
48796818--48796891	29	2.6	29	89	4	105	25	16	32	25	1.96
48801613--48801837	40	5.7	40	86	5	296	24	22	28	25	2.00
48801613--48801870	119	2.2	119	81	6	283	25	21	27	24	1.99
48812819--48812843	10	2.5	10	100	0	50	52	0	20	28	1.47
48816490--48816700	40	5.3	40	85	2	248	28	27	20	23	1.99
48824648--48824839	40	4.8	40	88	1	181	28	27	20	23	1.99
48824632--48824821	80	2.4	80	80	5	222	29	28	18	23	1.98
48831103--48831133	14	2.2	14	100	0	62	45	0	0	54	0.99
48831610--48831717	3	36.7	3	84	9	143	1	30	0	66	1.08
48835970--48836005	5	7.2	5	87	12	56	16	2	0	80	0.83
48840422--48840459	5	7.4	5	88	5	58	15	2	0	81	0.80
48843621--48843659	20	2.0	20	89	0	60	23	0	2	74	0.94
48855858--48855889	16	2.0	16	100	0	64	31	0	0	68	0.90
48856017--48856126	28	3.8	28	72	13	80	20	15	12	51	1.75
48856017--48856125	60	1.9	55	83	9	137	20	15	12	51	1.76
48862552--48862592	19	2.1	20	86	4	57	34	7	7	51	1.58
48892925--48892982	30	1.9	30	89	0	89	32	10	25	31	1.89
48895962--48896218	40	6.5	40	88	2	351	22	23	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48904035--48904285	40	6.5	39	84	8	286	22	23	29	25	1.99
48912707--48912933	39	5.8	40	90	5	340	23	24	29	22	1.99
48922196--48922322	47	2.7	47	82	8	161	28	20	29	22	1.98
48924812--48924889	31	2.6	30	87	4	104	55	10	12	21	1.67
48930562--48930606	20	2.2	20	88	0	63	35	13	2	48	1.54
48931905--48931943	21	2.0	20	90	10	62	17	5	15	61	1.51
48936772--48936817	22	2.1	22	84	4	58	43	0	8	47	1.34
48944572--48944627	25	2.2	25	83	3	67	32	16	8	42	1.79
48944580--48944627	25	1.9	25	86	0	69	35	16	8	39	1.79
48945179--48945211	6	5.5	6	92	0	57	36	27	0	36	1.57
48961996--48962029	16	2.1	16	100	0	68	41	5	11	41	1.66
48971287--48971510	40	5.7	40	87	6	280	25	27	22	25	2.00
48971281--48971510	118	1.9	120	84	8	310	24	27	22	26	2.00
48972075--48972118	22	2.0	21	83	12	54	40	15	4	38	1.68
48974190--48974236	22	2.1	22	92	7	78	55	4	21	19	1.60
48976844--48977103	40	6.6	40	88	2	357	27	23	26	22	2.00
48985002--48985262	40	6.6	40	88	1	357	27	23	26	22	2.00
48988260--48988285	8	3.2	8	100	0	52	76	0	0	23	0.78
48989494--48989524	15	2.1	15	93	0	53	22	29	12	35	1.91
48994331--48994575	39	6.3	40	79	11	258	22	19	28	28	1.98
48994330--48994555	78	2.9	78	86	6	300	23	19	28	27	1.99
48994330--48994584	117	2.2	115	84	6	352	23	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49004101--49004127	14	1.9	14	100	0	54	51	0	0	48	1.00
49004499--49004531	13	2.4	14	85	5	50	24	6	6	63	1.40
49004780--49004835	29	1.9	29	92	7	96	30	0	10	58	1.32
49004783--49004844	29	2.1	29	85	5	81	32	3	9	54	1.49
49004963--49005034	31	2.4	30	74	4	72	40	15	11	33	1.82
49005873--49005935	19	3.2	19	74	14	56	39	1	1	57	1.18
49006073--49006148	34	2.2	36	86	6	104	56	6	1	35	1.34
49008133--49008196	23	2.8	23	95	0	110	50	25	10	14	1.75
49009894--49010099	46	4.4	46	72	11	141	28	19	26	25	1.99
49027180--49027326	76	1.9	77	82	6	183	27	19	27	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290