genome.fa.s7.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  133  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41826613--41826655	19	2.3	19	80	8	52	34	2	18	44	1.63
41842540--41842677	45	3.1	45	79	8	113	33	28	20	17	1.95
41847962--41848108	45	3.3	45	77	12	126	32	28	21	17	1.96
41848043--41848194	43	3.5	43	91	0	232	34	31	23	10	1.89
41857657--41857802	71	2.1	71	100	0	292	39	16	15	28	1.89
41858302--41858556	55	4.8	53	78	9	220	36	17	24	21	1.95
41858309--41858509	108	1.8	110	87	6	302	34	17	24	22	1.96
41863026--41863102	38	2.0	38	89	0	118	28	12	25	32	1.93
41871609--41871656	25	1.9	25	86	0	69	33	20	16	29	1.95
41871682--41871738	20	2.9	21	87	10	77	38	8	19	33	1.82
41871788--41871917	26	5.1	26	88	1	194	26	20	23	28	1.99
41878558--41878621	5	12.6	5	81	15	78	78	1	0	20	0.84
41878563--41878610	13	3.9	13	92	7	75	79	0	0	20	0.74
41878552--41878618	30	2.3	29	92	2	107	76	1	0	22	0.87
41881704--41881819	27	4.2	28	82	7	114	35	21	24	18	1.96
41881704--41881819	55	2.1	56	84	7	148	35	21	24	18	1.96
41884571--41884775	40	5.2	40	90	6	285	25	28	22	23	1.99
41893063--41893132	27	2.5	28	86	4	88	34	20	24	21	1.97
41893057--41893152	28	3.4	27	79	4	75	33	20	23	21	1.97
41903119--41903224	43	2.5	43	83	7	128	33	25	15	25	1.95
41904372--41904402	13	2.4	13	94	0	53	35	9	9	45	1.70
41906756--41906830	25	2.9	26	82	4	98	42	10	14	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41908334--41908493	80	2.0	80	97	0	302	35	17	11	35	1.87
41916184--41916342	80	2.0	79	98	1	309	35	17	11	35	1.86
41918170--41918276	28	3.8	28	89	0	151	29	24	10	35	1.88
41923221--41923384	28	5.8	28	72	2	121	29	33	17	18	1.95
41923200--41923386	57	3.2	57	87	3	268	29	34	16	18	1.93
41923216--41923357	28	5.0	28	70	3	122	29	34	17	18	1.94
41925345--41925451	28	3.8	28	91	0	151	29	24	10	35	1.88
41931354--41931628	137	2.0	137	97	0	514	22	8	21	47	1.78
41940399--41940444	21	2.2	21	100	0	92	30	4	10	54	1.55
41942425--41942485	23	2.6	22	75	12	59	39	6	1	52	1.37
41944168--41944218	20	2.5	20	87	6	68	49	5	7	37	1.56
41952915--41953125	40	5.3	40	88	4	230	23	20	27	28	1.99
41957596--41957693	49	2.0	49	87	0	142	22	21	15	40	1.90
41957954--41957987	17	2.0	17	94	0	59	61	0	0	38	0.96
41958632--41958670	12	3.2	12	81	3	51	84	0	15	0	0.62
41959129--41959170	17	2.6	16	82	10	50	30	9	14	45	1.77
41959382--41959408	2	13.5	2	100	0	54	51	48	0	0	1.00
41960808--41960851	17	2.8	16	86	6	63	79	0	0	20	0.73
41963418--41963461	13	3.1	14	81	12	54	47	2	6	43	1.42
41968225--41968398	46	3.8	46	77	15	207	20	21	29	28	1.98
41968222--41968390	91	1.8	93	93	2	297	20	21	29	27	1.98
41971326--41971394	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41971317--41971404	30	3.0	30	81	8	99	10	17	15	56	1.66
41984047--41984120	36	2.1	36	100	0	148	21	16	24	37	1.93
41987733--41987783	25	2.0	25	84	0	66	35	11	13	39	1.82
41993347--41993516	47	3.7	47	77	12	183	28	18	30	22	1.97
41999101--41999146	19	2.5	18	83	13	58	58	17	6	17	1.59
41999472--41999532	30	2.0	30	83	0	77	31	24	6	37	1.81
42004021--42004143	47	2.6	47	81	8	135	27	18	30	23	1.98
42004120--42004236	46	2.5	46	86	6	157	29	17	29	24	1.97
42004071--42004291	47	4.7	47	77	13	151	28	19	28	24	1.98
42004026--42004283	140	1.8	139	81	9	319	28	18	28	24	1.98
42005167--42005343	83	2.1	83	98	0	345	22	19	31	27	1.98
42005830--42005898	6	11.0	6	84	9	93	15	1	4	78	0.98
42020373--42020408	16	2.2	16	100	0	72	27	27	19	25	1.99
42022217--42022274	25	2.4	25	82	8	66	68	1	6	22	1.22
42023484--42023508	10	2.5	10	100	0	50	0	16	20	64	1.30
42023927--42023966	20	2.0	20	100	0	80	20	10	15	55	1.68
42028969--42029081	6	18.3	6	71	18	81	19	18	13	48	1.80
42028969--42029060	25	3.7	25	89	0	139	19	19	13	47	1.81
42031140--42031334	27	7.2	27	86	1	248	35	16	18	28	1.93
42031719--42031782	22	2.9	22	75	9	67	21	25	21	31	1.98
42032113--42032181	31	2.2	31	86	0	93	18	20	14	46	1.84
42032113--42032202	6	14.7	6	70	17	60	18	18	14	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42037914--42038030	43	2.7	42	74	10	112	26	18	21	33	1.97
42044497--42044645	43	3.5	43	76	13	146	24	18	27	30	1.98
42046153--42046345	98	2.0	98	89	0	296	21	20	32	24	1.98
42053993--42054153	80	2.0	80	95	0	286	46	10	15	27	1.78
42054959--42055012	27	2.0	27	100	0	108	70	0	7	22	1.12
42057512--42057541	15	2.0	15	93	0	51	70	0	13	16	1.18
42059296--42059365	28	2.5	28	88	0	95	31	11	27	30	1.91
42059305--42059366	28	2.2	28	91	0	97	32	9	29	29	1.89
42059313--42059374	28	2.2	28	85	0	88	38	8	24	29	1.84
42064099--42064232	56	2.4	56	89	0	205	35	24	12	27	1.92
42068925--42068958	15	2.2	16	89	5	52	26	14	11	47	1.79
42076300--42076441	10	14.6	10	71	17	54	63	3	0	32	1.16
42076330--42076370	11	3.7	11	87	9	57	60	4	0	34	1.18
42076327--42076370	23	2.0	22	90	4	70	59	6	0	34	1.24
42076327--42076361	11	3.0	12	91	8	63	60	8	0	31	1.27
42076351--42076502	20	7.8	20	72	13	95	61	3	0	34	1.17
42076335--42076502	78	2.1	78	80	9	182	60	4	0	34	1.20
42076537--42076776	10	24.8	9	68	17	92	33	2	3	60	1.30
42076616--42076708	19	4.9	19	76	13	77	31	1	2	65	1.11
42076635--42076694	18	3.1	18	81	16	59	35	0	1	63	1.05
42080759--42081067	27	11.5	27	86	6	389	38	19	10	31	1.85
42083858--42084092	49	4.7	49	78	8	253	26	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42086627--42086689	28	2.3	27	83	2	81	20	17	38	23	1.93
42087005--42087388	80	4.8	81	83	2	497	36	19	11	32	1.88
42087006--42087453	27	16.7	27	85	2	481	37	19	10	31	1.86
42087418--42087498	27	3.0	27	90	0	117	35	18	18	27	1.94
42088679--42088813	26	5.3	26	93	3	208	29	22	19	28	1.98
42088863--42088957	20	4.8	20	88	5	133	33	17	9	38	1.82
42088863--42088938	11	7.5	11	66	16	56	31	18	10	39	1.85
42088863--42088949	40	2.2	40	93	4	149	32	18	10	39	1.84
42088880--42088956	9	7.8	10	69	16	54	33	18	9	38	1.82
42096800--42096955	26	6.2	26	85	3	169	31	21	19	28	1.97
42097005--42097071	20	3.3	20	93	0	116	31	17	10	40	1.84
42097005--42097079	40	1.9	38	91	5	123	33	17	9	40	1.81
42100267--42100334	34	2.0	34	100	0	136	52	14	5	26	1.64
42105219--42105381	42	3.9	42	81	4	193	26	24	16	31	1.96
42105219--42105382	85	1.9	84	85	1	220	27	24	16	31	1.96
42105912--42105946	3	11.7	3	93	0	61	0	31	0	68	0.90
42107022--42107051	16	1.9	16	93	6	53	53	3	3	40	1.34
42114003--42114031	13	2.2	13	100	0	58	20	37	13	27	1.91
42114037--42114186	43	3.5	43	76	5	133	33	24	14	27	1.94
42115852--42115922	24	3.0	24	95	0	124	35	1	38	25	1.65
42115852--42115945	48	1.9	48	81	10	111	36	3	37	23	1.71
42117363--42117422	29	2.1	29	84	9	79	21	28	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42117370--42117455	29	3.0	27	83	9	100	19	23	19	37	1.94
42117380--42117464	29	3.1	27	85	8	100	17	22	22	37	1.94
42119919--42120069	77	1.9	79	81	10	186	18	22	26	32	1.97
42122314--42122519	47	4.4	47	86	0	259	33	9	29	27	1.88
42122319--42122519	94	2.1	94	86	0	285	34	9	28	27	1.88
42123843--42123919	20	3.9	20	91	6	122	22	33	29	14	1.93
42138563--42138644	41	2.0	41	97	0	155	24	19	15	40	1.91
42138766--42138964	42	4.6	42	74	5	139	26	24	18	31	1.97
42142405--42142668	52	5.1	51	77	6	167	33	16	23	26	1.96
42142405--42142671	26	10.3	26	70	10	125	33	16	23	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290