genome.fa.s7.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  150  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47937762--47937982	40	5.6	40	84	7	274	25	22	26	25	2.00
47938210--47938251	22	1.9	22	85	9	59	33	9	14	42	1.78
47941211--47941429	40	5.5	40	91	3	327	25	27	22	24	2.00
47944996--47945137	47	3.0	47	90	3	216	29	11	14	44	1.80
47945951--47946080	45	2.9	44	88	4	188	23	21	26	27	1.99
47952197--47952344	48	3.1	48	87	2	210	30	12	13	43	1.82
47953157--47953320	45	3.7	44	85	5	199	24	20	28	26	1.99
47959402--47959543	47	3.0	47	91	1	232	28	13	14	43	1.83
47960349--47960507	45	3.6	45	87	5	209	24	22	26	27	2.00
47962516--47962691	46	3.8	46	76	4	183	29	27	21	21	1.98
47962524--47962695	93	1.8	93	89	0	272	28	28	21	21	1.99
47964175--47964210	17	2.1	17	100	0	72	47	22	11	19	1.80
47964730--47964833	38	2.7	39	80	4	120	36	16	28	18	1.92
47964730--47964892	39	4.2	39	72	7	116	35	14	28	20	1.93
47964748--47964949	39	5.2	38	75	4	156	36	15	27	20	1.93
47986081--47986125	12	3.8	12	87	0	63	28	13	11	46	1.77
47990333--47990482	77	1.9	79	90	5	243	27	20	20	32	1.97
47990281--47990485	26	7.8	27	80	6	179	26	21	20	31	1.98
48002128--48002248	39	3.1	39	87	2	172	23	28	23	23	1.99
48025826--48026001	46	3.8	46	79	12	216	20	21	29	28	1.98
48025823--48025994	93	1.8	93	96	0	317	20	21	29	27	1.98
48028930--48029114	79	2.3	82	83	7	229	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48028911--48029114	40	5.1	40	81	8	229	24	27	22	25	2.00
48036074--48036202	46	2.8	46	91	0	195	18	21	28	31	1.97
48037997--48038103	26	4.2	25	92	4	178	36	22	7	33	1.82
48037997--48038103	51	2.1	52	94	1	189	36	22	7	33	1.82
48048957--48049015	30	2.0	30	83	6	75	38	3	25	32	1.72
48049350--48049482	43	2.9	44	73	15	126	24	18	27	29	1.98
48061237--48061349	38	2.9	38	86	2	136	22	23	28	25	1.99
48061253--48061354	38	2.7	38	89	0	141	21	23	27	27	1.99
48061353--48061477	43	2.9	43	91	0	196	13	25	31	29	1.94
48064859--48064896	18	2.1	18	100	0	76	18	21	39	21	1.93
48074206--48074421	46	4.7	44	75	13	177	26	28	17	27	1.98
48074206--48074428	94	2.4	92	81	8	240	26	29	17	26	1.98
48074157--48074420	140	1.9	141	82	6	338	25	28	18	28	1.98
48075294--48075356	31	2.0	31	96	0	117	31	23	6	38	1.80
48080147--48080195	25	2.0	25	83	0	62	38	0	26	34	1.57
48082019--48082113	47	2.0	47	95	0	172	29	10	22	37	1.87
48082231--48082341	39	2.8	39	86	1	141	33	5	18	42	1.74
48087168--48087206	20	2.0	20	90	5	62	43	20	10	25	1.83
48087758--48087800	22	2.0	22	95	0	77	39	4	11	44	1.62
48091162--48091280	58	2.1	57	82	3	141	31	28	12	27	1.93
48091193--48091280	29	3.1	29	88	1	142	30	27	14	27	1.95
48091497--48091534	16	2.4	16	95	0	67	13	23	15	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48093894--48093967	38	1.9	38	97	0	139	51	8	14	25	1.70
48096888--48097108	49	4.6	49	74	12	167	26	19	28	24	1.99
48106980--48107011	5	6.2	5	96	3	55	3	18	0	78	0.89
48113011--48113063	26	2.0	26	88	0	79	5	24	0	69	1.09
48114719--48114882	43	3.8	43	81	9	165	32	26	16	24	1.96
48123758--48123813	27	2.1	27	96	0	103	30	12	19	37	1.89
48131667--48131731	23	2.9	23	78	17	66	36	1	1	60	1.16
48135017--48135062	23	2.0	23	100	0	92	43	0	4	52	1.21
48138924--48139480	49	11.6	49	92	4	940	33	8	28	30	1.86
48138924--48139480	96	5.8	97	93	4	925	33	8	28	30	1.86
48138924--48139480	145	3.9	145	96	1	1014	33	8	28	30	1.86
48141662--48141845	55	3.4	54	83	5	237	21	24	17	35	1.95
48141824--48141945	47	2.6	46	90	5	190	26	22	13	37	1.91
48145101--48145152	24	2.2	24	89	0	77	55	9	1	32	1.43
48148427--48148488	30	2.1	30	100	0	124	25	25	24	24	2.00
48148633--48149208	288	2.0	288	97	0	1080	36	12	23	27	1.91
48152292--48152375	27	3.1	26	83	6	105	14	16	36	32	1.89
48152275--48152375	54	1.9	53	86	8	143	14	14	36	33	1.88
48166605--48166631	2	13.5	2	100	0	54	48	0	0	51	1.00
48174044--48174512	27	17.4	27	76	6	233	28	14	20	37	1.91
48174044--48174512	54	8.7	53	80	5	308	28	14	20	37	1.91
48174044--48174512	81	5.8	81	80	6	348	28	14	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48174225--48174565	81	4.2	80	83	4	353	30	9	21	38	1.85
48174636--48174712	37	2.1	37	100	0	154	18	36	19	25	1.94
48178260--48178531	47	5.8	48	78	9	233	23	29	19	28	1.98
48178260--48178525	140	1.9	141	84	6	362	22	29	19	28	1.98
48192509--48192653	40	3.6	40	85	4	193	25	24	26	23	2.00
48200474--48200618	40	3.6	40	85	4	184	25	24	26	24	2.00
48202888--48202961	31	2.4	31	93	0	130	16	32	31	20	1.94
48222216--48222302	45	1.9	45	92	0	147	36	21	13	27	1.92
48228211--48228294	43	1.9	44	90	2	134	22	21	32	23	1.98
48228575--48228785	38	5.4	38	84	4	226	24	24	22	28	1.99
48228575--48228785	116	1.8	116	85	2	298	24	24	22	28	1.99
48228765--48228806	21	2.0	21	100	0	84	28	23	14	33	1.94
48228727--48228844	59	2.0	59	94	0	209	23	22	21	32	1.98
48228788--48228944	38	4.1	38	93	0	251	22	22	24	30	1.99
48228689--48228882	97	2.0	99	88	2	293	23	23	22	30	1.99
48228658--48228921	135	1.9	137	90	1	424	23	23	23	30	1.99
48230099--48230179	40	2.0	40	92	0	135	49	7	14	28	1.70
48234097--48234218	22	5.3	22	62	21	61	25	29	11	33	1.91
48234069--48234578	47	10.6	47	91	3	683	27	29	9	33	1.88
48243067--48243300	48	4.9	48	88	2	344	24	18	31	25	1.98
48243076--48243336	48	5.4	48	85	4	159	25	18	30	24	1.98
48243069--48243336	96	2.8	94	82	6	313	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48243070--48243336	144	1.9	143	84	4	358	25	18	30	25	1.98
48257170--48257257	32	2.7	33	80	5	108	27	18	26	28	1.98
48258570--48258601	16	1.9	17	93	6	57	0	0	12	87	0.54
48258568--48258602	10	3.4	10	84	7	52	0	0	11	88	0.51
48259543--48259593	6	8.5	6	78	8	59	78	1	0	19	0.85
48259543--48259593	12	4.2	12	85	7	68	78	1	0	19	0.85
48261433--48261522	37	2.3	39	83	11	105	31	14	21	33	1.93
48264940--48265049	27	4.0	26	85	9	130	17	24	22	35	1.95
48264940--48265049	55	2.0	54	85	5	150	17	24	22	35	1.95
48266019--48266056	14	2.6	15	83	8	51	65	2	5	26	1.27
48272626--48272689	26	2.4	26	87	10	85	34	23	9	32	1.87
48272794--48272906	27	4.2	26	86	8	145	16	23	23	36	1.94
48272794--48272906	55	2.1	54	88	5	165	16	23	23	36	1.94
48274603--48274656	14	4.0	14	76	13	60	70	1	1	25	1.07
48278448--48278583	57	2.4	57	91	0	218	38	22	16	22	1.93
48279820--48279883	19	3.3	19	97	2	119	29	10	10	48	1.73
48282868--48282904	6	6.2	6	96	0	65	35	0	64	0	0.94
48294761--48294901	47	2.9	48	82	3	176	26	19	26	26	1.99
48314788--48314838	23	2.2	23	96	0	93	11	25	33	29	1.91
48322249--48322440	40	4.8	40	79	1	206	27	27	20	25	1.99
48322220--48322440	80	2.8	79	86	2	291	28	26	19	24	1.99
48329293--48329353	32	1.9	32	89	0	95	36	19	13	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48330880--48331062	79	2.3	81	84	7	232	25	27	22	24	2.00
48330859--48331062	40	5.1	40	82	8	238	25	27	22	24	2.00
48338960--48339142	79	2.3	81	84	7	232	25	27	22	24	2.00
48338939--48339142	40	5.1	40	82	8	238	25	27	22	24	2.00
48353839--48353893	27	2.0	27	100	0	110	38	14	14	32	1.87
48354716--48354740	10	2.5	10	100	0	50	44	12	32	12	1.78
48355616--48355656	6	7.0	6	83	10	50	19	2	0	78	0.87
48355620--48355656	17	2.2	17	90	9	58	18	2	0	78	0.87
48359653--48359827	46	3.8	46	88	1	235	20	18	28	33	1.96
48378619--48378660	20	2.1	20	100	0	84	40	4	14	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290