genome.fa.s7.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  160  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51694145--51694210	34	2.0	33	82	8	82	59	4	0	36	1.18
51696284--51696310	13	2.1	13	100	0	54	22	33	29	14	1.94
51698516--51698560	22	2.0	22	95	0	81	44	4	22	28	1.72
51705321--51705359	20	2.0	20	90	10	62	35	2	7	53	1.43
51709466--51709541	22	3.3	22	66	16	64	32	10	30	26	1.90
51709447--51709663	47	4.6	47	92	0	371	34	6	29	29	1.83
51713641--51713681	12	3.4	12	96	0	73	41	7	0	51	1.30
51715870--51715906	16	2.3	16	90	0	56	27	13	0	59	1.35
51716166--51716223	20	2.8	21	75	20	59	65	1	0	32	1.03
51716217--51716262	20	2.3	21	85	14	71	54	0	2	43	1.12
51716217--51716268	20	2.7	18	80	14	59	55	1	1	40	1.22
51716326--51716376	19	2.5	21	81	15	63	62	0	7	29	1.23
51716327--51716376	21	2.5	21	90	6	77	62	0	8	30	1.24
51716736--51716937	89	2.2	91	78	10	218	36	6	18	38	1.77
51718974--51719008	16	2.2	16	89	0	52	51	14	20	14	1.76
51719220--51719294	28	2.7	28	87	8	116	22	12	36	29	1.90
51720328--51720361	18	1.9	18	88	5	52	41	11	17	29	1.85
51724079--51724256	27	6.6	27	78	7	146	28	28	16	26	1.97
51733737--51733914	27	6.6	27	81	5	180	28	28	16	26	1.97
51733758--51733913	82	1.9	81	86	3	224	28	28	16	26	1.97
51735721--51735763	8	5.4	8	83	8	52	62	2	2	32	1.20
51735721--51735763	16	2.7	15	89	7	59	62	2	2	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51735877--51735957	42	1.9	40	83	14	101	55	6	7	30	1.52
51735849--51735965	45	2.6	42	79	12	112	57	6	5	30	1.47
51735992--51736123	23	5.6	24	75	8	110	55	3	6	35	1.40
51736072--51736123	24	2.2	23	83	10	61	59	0	3	36	1.16
51736404--51736442	16	2.4	16	86	0	51	43	28	5	23	1.75
51736609--51736694	30	2.9	30	92	0	118	18	5	47	27	1.71
51737396--51737793	89	4.4	87	80	11	326	35	18	16	29	1.93
51737396--51737901	87	5.6	89	79	11	403	36	17	16	28	1.92
51737705--51737737	14	2.4	14	94	0	57	63	6	12	18	1.48
51737486--51737901	91	4.6	85	78	13	336	37	18	16	27	1.92
51737808--51738197	73	5.3	73	83	7	468	34	19	16	29	1.94
51737830--51738197	146	2.5	146	93	0	610	32	20	16	30	1.94
51738122--51738286	86	1.9	87	83	2	215	36	18	16	28	1.93
51738273--51738300	12	2.3	12	100	0	56	64	7	7	21	1.43
51738329--51738679	75	4.7	74	85	7	462	33	20	15	31	1.93
51738329--51738679	146	2.4	148	85	2	472	33	20	15	31	1.93
51738677--51738960	99	2.9	98	89	3	401	38	19	17	24	1.93
51738849--51738893	13	3.4	13	81	6	63	68	4	11	15	1.34
51738873--51739039	73	2.3	74	89	2	257	34	20	17	27	1.95
51738956--51739128	91	1.9	87	90	4	274	36	19	16	27	1.93
51739112--51739156	13	3.4	13	81	6	63	68	4	11	15	1.34
51739030--51739224	100	1.9	103	86	5	281	39	18	17	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51739136--51739303	73	2.3	74	89	1	257	33	20	17	27	1.96
51738688--51739394	264	2.6	262	93	4	1168	36	19	17	25	1.94
51739220--51739403	91	2.0	87	86	6	235	37	19	16	26	1.93
51741908--51742289	47	8.1	47	93	0	647	24	28	12	35	1.91
51750416--51750467	8	6.5	8	78	8	52	63	1	3	30	1.23
51750420--51750467	16	3.1	15	87	6	60	62	2	4	31	1.26
51750584--51750643	23	2.9	20	70	15	59	56	5	6	31	1.47
51750664--51750745	29	2.9	28	76	14	87	58	3	7	30	1.43
51750708--51750839	23	5.6	24	75	8	110	54	3	6	36	1.41
51750620--51750763	29	5.6	26	68	18	63	56	4	6	31	1.47
51751122--51751160	16	2.4	16	86	0	51	43	28	5	23	1.75
51751331--51751412	30	2.7	30	92	0	128	18	4	48	28	1.68
51751347--51751402	18	3.5	17	68	27	50	19	5	48	26	1.70
51758656--51758771	22	5.0	23	79	12	114	22	20	19	37	1.95
51758681--51758765	45	1.9	44	90	2	134	22	22	20	35	1.96
51766749--51766940	50	3.8	50	82	4	233	25	18	26	29	1.98
51766753--51766937	101	1.8	101	89	2	291	24	18	26	30	1.98
51767140--51767171	16	2.0	16	93	0	55	46	0	18	34	1.49
51769908--51770047	23	6.0	23	80	10	135	22	20	20	36	1.95
51769908--51770047	68	2.0	71	83	8	180	22	20	20	36	1.95
51771528--51771572	18	2.5	18	85	7	65	13	40	2	44	1.56
51771609--51771663	26	2.1	27	86	3	76	21	40	16	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51772946--51773210	93	2.8	93	91	0	422	29	29	19	21	1.98
51772993--51773155	47	3.5	47	75	5	195	30	30	18	21	1.97
51772939--51773207	46	5.8	46	73	8	213	30	28	18	21	1.97
51774043--51774082	19	2.1	19	100	0	80	35	22	20	22	1.96
51783304--51783349	19	2.4	20	85	10	69	39	0	0	60	0.97
51783647--51783671	13	1.9	13	100	0	50	68	0	32	0	0.90
51783836--51783953	60	2.0	59	91	1	191	33	0	9	56	1.31
51786325--51786364	20	1.9	21	90	10	64	27	5	10	57	1.52
51786300--51786442	76	1.9	76	84	7	191	25	4	12	56	1.56
51787190--51787220	16	1.9	16	100	0	62	41	12	25	19	1.87
51789095--51789171	27	2.9	27	86	0	73	25	22	25	25	2.00
51789111--51789171	27	2.3	27	94	0	104	27	19	27	24	1.99
51793758--51793796	21	1.9	21	89	5	62	58	0	0	41	0.98
51793757--51793802	20	2.3	20	81	7	58	63	0	0	36	0.95
51793920--51793951	15	2.1	15	100	0	64	6	12	25	56	1.59
51806058--51806112	9	5.4	10	79	14	51	56	20	1	21	1.51
51806077--51806112	9	3.9	9	85	7	54	58	19	0	22	1.40
51809312--51809368	24	2.5	21	78	18	60	5	17	1	75	1.07
51817679--51817857	52	3.5	50	81	7	200	27	27	15	29	1.96
51817679--51817857	51	3.5	51	82	7	204	27	27	15	29	1.96
51824773--51825129	48	7.4	48	95	0	624	33	7	28	30	1.84
51825302--51825440	37	3.8	37	98	0	260	23	20	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51827965--51828055	45	2.0	45	89	0	137	26	13	25	35	1.92
51844567--51844614	22	2.2	22	96	0	87	14	33	31	20	1.93
51850300--51850342	21	2.1	21	86	4	61	48	23	2	25	1.62
51850568--51850600	15	2.1	16	88	5	50	18	0	9	72	1.10
51852258--51852302	20	2.2	20	88	0	63	48	2	11	37	1.51
51865409--51865454	24	1.9	24	82	8	58	10	23	15	50	1.75
51877200--51877372	46	3.7	46	78	13	210	21	21	27	28	1.99
51877197--51877367	93	1.8	93	96	0	315	21	21	28	28	1.99
51878231--51878268	19	2.1	19	90	5	60	65	0	0	34	0.93
51887964--51888009	24	1.9	24	86	8	67	10	21	17	50	1.77
51889088--51889128	17	2.4	17	100	0	82	31	17	21	29	1.96
51890988--51891040	27	2.0	27	92	0	88	37	22	15	24	1.92
51894288--51894344	28	2.1	28	93	3	98	21	24	21	33	1.97
51905285--51905686	46	8.5	45	72	16	166	27	19	29	23	1.98
51905382--51905552	48	3.7	43	82	12	173	26	20	29	23	1.99
51905425--51905691	96	2.8	96	79	11	268	26	18	30	25	1.98
51909276--51909337	30	2.1	30	84	6	81	38	14	16	30	1.88
51934201--51934230	9	3.3	9	90	0	51	73	0	23	3	0.98
51934126--51934231	55	1.9	55	81	11	128	63	1	28	6	1.30
51937299--51937416	51	2.4	50	79	12	118	33	11	11	44	1.76
51941249--51941411	46	3.5	45	76	15	163	29	28	20	21	1.98
51941250--51941420	93	1.8	93	92	0	288	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51948841--51949011	93	1.8	93	88	0	261	28	27	21	22	1.99
51948836--51949008	46	3.7	46	73	10	154	29	26	20	23	1.99
51954756--51954940	79	2.3	82	83	7	229	24	27	22	24	2.00
51954737--51954940	40	5.1	40	81	8	229	24	27	22	25	2.00
51961784--51961953	46	3.7	46	75	13	168	21	21	27	29	1.99
51961781--51961951	93	1.8	93	89	0	270	21	21	28	29	1.98
51966145--51966222	15	5.2	15	74	9	61	16	17	12	52	1.74
51966154--51966233	15	5.4	15	71	12	58	13	16	12	57	1.65
51976078--51976244	45	3.7	45	72	17	157	21	20	28	29	1.98
51980412--51980489	15	5.2	15	74	9	61	16	17	12	52	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290