genome.fa.s7.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  157  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50620934--50621036	48	2.1	48	83	0	125	39	5	15	38	1.72
50620981--50621034	28	1.9	28	84	0	72	38	1	16	42	1.59
50620997--50621043	20	2.5	19	89	6	69	40	0	17	42	1.49
50620979--50621043	10	6.7	10	70	7	53	38	1	16	43	1.58
50622707--50622742	18	1.9	19	88	5	56	69	0	19	11	1.18
50623794--50623845	22	2.3	23	78	15	56	19	9	11	59	1.59
50624506--50624539	8	4.2	8	84	0	50	17	0	0	82	0.67
50625937--50625965	15	1.9	15	100	0	58	6	48	20	24	1.74
50628447--50628668	79	2.8	79	79	9	220	26	27	20	25	1.99
50628473--50628666	40	4.8	40	81	5	214	26	27	21	24	1.99
50631928--50631967	12	3.7	12	78	21	52	35	0	0	65	0.93
50631943--50631984	14	3.1	14	79	6	50	42	0	0	57	0.99
50632158--50632199	16	2.6	16	92	0	66	30	21	0	47	1.51
50632316--50632344	6	4.8	6	100	0	58	86	0	0	13	0.58
50638969--50639097	38	3.4	37	82	8	161	34	21	18	24	1.96
50638938--50639089	76	2.0	76	84	7	202	33	21	19	25	1.97
50644974--50645219	49	4.9	50	83	2	298	25	18	26	28	1.98
50645079--50645162	28	3.2	28	65	25	83	23	16	29	29	1.96
50650434--50650584	28	5.4	28	94	1	241	27	11	27	33	1.92
50650434--50650598	83	2.0	85	85	6	228	28	11	25	34	1.91
50656516--50656748	49	4.7	50	83	2	299	25	18	27	28	1.98
50656621--50656704	28	3.2	28	65	25	83	23	16	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50660135--50660392	40	6.5	40	91	2	378	23	21	28	26	1.99
50663618--50663806	68	2.8	68	82	3	236	39	18	18	23	1.92
50665968--50666004	5	7.4	5	100	0	74	21	0	0	78	0.75
50666645--50666676	13	2.3	15	89	10	50	46	3	12	37	1.57
50671564--50671876	47	6.7	47	92	0	475	33	8	29	28	1.87
50671995--50672073	37	2.1	37	88	4	115	25	18	30	25	1.98
50677893--50677939	24	2.0	24	91	0	76	36	4	40	19	1.71
50679302--50679457	27	5.7	27	78	6	145	27	28	16	27	1.97
50679307--50679458	54	2.8	55	80	4	182	26	28	16	28	1.97
50687391--50687544	27	5.7	27	78	8	145	27	27	16	27	1.97
50687370--50687545	54	3.3	54	76	12	175	27	28	15	27	1.96
50689327--50689384	24	2.4	24	91	0	89	41	5	34	18	1.73
50693862--50693920	29	2.0	29	100	0	118	30	13	30	25	1.94
50697241--50697345	47	2.2	48	89	3	158	36	6	38	19	1.78
50697241--50697340	24	4.2	23	89	3	146	36	6	38	20	1.77
50702068--50702242	38	4.5	38	89	4	226	23	23	24	29	1.99
50702097--50702256	38	4.2	38	90	0	230	20	21	25	32	1.97
50708492--50708681	38	4.9	38	82	5	184	23	20	23	33	1.97
50713557--50713652	18	5.2	18	72	17	65	63	3	3	30	1.25
50713551--50713679	53	2.5	50	77	16	136	61	2	3	33	1.24
50717924--50718053	50	2.6	49	86	3	172	30	26	16	26	1.97
50717924--50718110	101	1.9	99	84	4	250	28	26	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50725843--50725878	15	2.4	15	100	0	72	30	36	0	33	1.58
50726528--50726552	13	1.9	13	100	0	50	28	0	8	64	1.22
50729450--50729504	28	2.0	28	81	0	65	34	29	20	16	1.94
50729674--50729753	27	3.0	26	84	8	99	33	20	23	22	1.97
50729890--50729949	27	2.3	26	80	11	68	30	18	13	38	1.89
50736304--50736383	41	2.0	40	85	9	108	21	23	41	13	1.89
50736502--50736541	21	2.0	21	85	5	55	15	40	25	20	1.90
50739788--50739944	37	4.2	37	84	4	192	20	12	25	41	1.88
50739762--50739944	74	2.5	73	84	5	226	20	11	26	40	1.87
50742723--50742947	47	4.8	47	90	3	330	27	18	30	24	1.98
50745372--50745422	26	2.0	26	88	7	77	35	0	15	49	1.45
50753707--50753759	26	2.0	25	86	13	72	35	1	16	45	1.59
50760038--50760087	25	2.0	25	100	0	100	48	8	28	16	1.74
50762005--50762127	47	2.6	47	94	0	210	29	30	19	21	1.97
50773907--50773931	12	2.1	12	100	0	50	24	32	0	44	1.54
50780005--50780059	16	3.4	16	82	0	74	32	25	5	36	1.79
50784359--50784604	122	2.0	123	93	0	422	39	20	9	30	1.85
50786289--50786412	62	2.0	61	98	1	239	50	9	29	11	1.70
50786298--50786412	61	1.9	61	98	1	196	50	9	29	10	1.68
50786523--50787339	110	7.7	108	79	9	730	27	0	13	57	1.42
50787008--50787318	99	3.0	99	77	12	333	26	0	13	58	1.41
50786897--50787318	209	2.0	208	84	5	557	27	0	13	57	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50790427--50790458	15	2.1	15	94	0	55	65	0	21	12	1.25
50802842--50802896	29	1.9	28	92	3	92	20	21	25	32	1.97
50807952--50808139	94	2.0	94	93	0	322	30	10	20	38	1.86
50808168--50808229	24	2.6	24	87	5	81	19	16	30	33	1.94
50814817--50815000	94	2.0	90	87	6	262	30	10	19	39	1.86
50816955--50817032	30	2.6	30	95	0	138	24	38	23	14	1.91
50818748--50818827	41	2.0	41	92	0	133	42	17	10	30	1.82
50828611--50828668	30	1.9	30	82	6	73	22	31	29	17	1.96
50839273--50839428	27	5.7	27	78	6	145	27	28	16	28	1.97
50839278--50839429	54	2.8	55	80	4	182	26	27	16	28	1.97
50847336--50847491	27	5.7	27	78	6	145	27	28	16	28	1.97
50847341--50847492	54	2.8	55	80	4	182	26	27	16	28	1.97
50856344--50856519	46	3.8	45	77	10	194	22	19	28	29	1.98
50856340--50856511	93	1.8	93	92	0	290	22	20	29	28	1.98
50859206--50859350	57	2.5	58	83	5	177	31	17	17	33	1.93
50860104--50860150	24	2.0	24	87	8	69	29	6	23	40	1.79
50863126--50863883	377	2.0	378	93	0	1313	31	14	22	31	1.94
50865304--50865474	46	3.7	48	75	12	149	29	27	21	21	1.98
50865302--50865474	93	1.9	93	88	0	265	30	27	21	20	1.98
50868762--50868792	11	2.8	11	100	0	62	29	19	29	22	1.98
50868809--50868942	37	3.8	36	72	17	109	29	12	29	28	1.93
50872811--50873335	261	2.0	262	96	0	962	27	16	10	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50873338--50873534	106	1.8	107	86	4	290	56	16	1	25	1.48
50873667--50873716	26	1.9	26	84	8	66	2	30	2	66	1.14
50873930--50873976	22	2.1	22	88	7	69	65	0	0	34	0.93
50873930--50873977	23	2.1	22	85	11	62	66	0	0	33	0.92
50876650--50876688	14	2.6	16	88	8	55	43	2	20	33	1.65
50877000--50877183	49	3.7	49	78	5	208	29	18	23	28	1.98
50876991--50877178	100	1.9	100	90	0	304	27	19	23	28	1.99
50882229--50882416	49	3.8	49	83	4	243	26	19	26	28	1.98
50882226--50882411	100	1.9	100	93	0	318	25	19	26	28	1.99
50885158--50885443	27	10.6	27	84	0	374	39	19	8	32	1.82
50885158--50885500	81	4.2	81	83	2	393	39	20	8	31	1.83
50885158--50885552	27	14.6	27	76	7	277	38	21	8	31	1.83
50885544--50885701	27	5.9	27	87	1	210	38	17	18	24	1.93
50885536--50885729	54	3.6	54	84	1	246	37	18	19	24	1.94
50885536--50885712	27	6.6	26	82	6	194	37	19	18	24	1.94
50885536--50885715	80	2.2	81	90	1	281	37	18	18	25	1.94
50886132--50886219	6	14.3	6	75	17	83	18	17	17	47	1.83
50886132--50886210	31	2.5	31	91	0	122	17	17	16	48	1.82
50893967--50894189	39	5.7	40	84	9	239	25	26	22	25	2.00
50893967--50894189	79	2.8	77	82	10	263	25	26	22	25	2.00
50893967--50894189	118	1.9	119	82	8	285	25	26	22	25	2.00
50901893--50902077	79	2.3	80	86	8	245	25	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50901893--50902117	119	1.9	119	83	9	298	25	26	22	25	2.00
50901893--50902117	40	5.7	40	82	9	248	25	26	22	25	2.00
50911231--50911279	17	2.9	17	93	0	89	18	16	10	55	1.69
50911231--50911294	34	1.9	33	87	9	94	20	14	10	54	1.69
50917003--50917046	14	3.2	13	78	12	52	70	0	27	2	0.99
50919389--50919460	28	2.6	27	82	6	90	33	25	6	34	1.83
50919468--50919543	40	1.9	40	86	0	107	31	30	15	22	1.95
50930910--50930977	27	2.6	27	80	2	75	33	16	27	22	1.95
50930989--50931056	26	2.6	26	80	0	82	26	14	29	29	1.95
50936976--50937153	27	6.6	27	74	6	119	28	16	26	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290