genome.fa.s7.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  140  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44272820--44272910	44	2.0	45	97	2	175	28	8	28	34	1.87
44272957--44273009	24	2.2	24	90	6	81	41	0	0	58	0.98
44276713--44276771	29	2.0	29	100	0	118	30	16	13	38	1.88
44279167--44279234	31	2.2	31	89	0	100	42	8	13	35	1.75
44280223--44280247	9	2.8	9	100	0	50	92	0	8	0	0.40
44283092--44283143	5	10.4	5	83	8	70	61	0	1	36	1.07
44283475--44283517	8	5.2	8	78	15	52	69	2	25	2	1.12
44283854--44284053	109	1.8	109	94	2	357	35	9	7	48	1.63
44297925--44297963	21	1.9	20	89	5	60	46	20	0	33	1.51
44301970--44302015	24	1.9	24	90	0	74	10	26	13	50	1.74
44305177--44305448	39	7.0	39	93	0	463	22	29	26	22	1.99
44316030--44316159	64	2.0	64	86	4	179	23	30	16	30	1.96
44316151--44316219	21	3.2	21	63	25	54	26	27	14	31	1.95
44316736--44316796	30	2.0	30	83	0	77	31	22	8	37	1.84
44320198--44320375	27	6.6	27	85	3	133	29	28	14	26	1.95
44320198--44320374	54	3.3	54	83	5	214	29	28	14	26	1.95
44320219--44320374	81	1.9	82	88	3	235	29	28	14	26	1.95
44328076--44328250	27	6.4	27	84	3	199	30	28	14	26	1.95
44328076--44328250	54	3.2	54	85	3	226	30	28	14	26	1.95
44328094--44328249	81	1.9	82	88	3	235	29	29	14	26	1.95
44342451--44342511	30	2.1	29	90	3	95	29	16	21	32	1.95
44354684--44354725	22	1.9	22	90	0	66	35	4	14	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44354907--44354937	16	2.0	15	93	6	53	54	0	0	45	0.99
44361231--44361332	10	9.8	10	72	21	68	73	0	2	22	1.03
44361230--44361309	13	5.9	13	75	20	67	72	1	1	25	0.99
44361230--44361327	22	4.4	21	80	17	101	73	1	2	23	1.00
44368244--44368513	46	5.7	48	75	16	217	26	18	29	24	1.98
44370874--44370938	28	2.3	28	94	0	112	33	27	7	30	1.85
44371054--44371134	28	2.8	29	92	5	130	22	25	20	30	1.98
44371598--44371636	19	2.1	19	85	0	51	15	5	7	71	1.26
44377641--44377755	46	2.5	44	83	6	133	27	16	29	26	1.97
44382477--44382581	47	2.2	47	96	0	192	34	7	30	27	1.85
44392886--44393221	50	6.7	50	79	5	286	30	24	18	27	1.98
44392889--44393223	149	2.2	150	87	4	473	30	24	18	26	1.98
44398489--44398546	27	2.1	27	84	6	73	18	18	22	39	1.92
44420536--44420740	40	5.2	39	91	4	297	26	27	21	23	1.99
44424587--44424647	30	2.0	30	83	0	77	31	24	8	36	1.85
44441465--44441489	10	2.5	10	100	0	50	16	12	52	20	1.75
44441661--44441831	27	6.3	27	73	11	93	37	19	11	31	1.88
44441662--44441833	54	3.2	54	70	6	143	37	19	11	31	1.87
44441785--44441844	27	2.2	27	84	0	75	41	16	13	28	1.86
44442280--44442342	27	2.3	27	83	0	81	19	20	20	39	1.92
44443301--44443352	27	1.9	27	84	7	70	36	17	17	28	1.92
44443342--44443473	27	4.9	27	81	3	124	37	20	9	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44443315--44443474	54	3.0	53	75	5	151	36	19	11	32	1.87
44443927--44443982	27	2.1	27	82	0	67	25	12	16	46	1.81
44444954--44445011	27	2.1	27	81	6	64	34	15	12	37	1.85
44445064--44445123	27	2.2	27	87	0	84	41	16	15	26	1.88
44445559--44445621	27	2.3	27	83	0	81	19	20	20	39	1.92
44446582--44446642	27	2.3	27	85	5	79	40	16	13	29	1.86
44446596--44446754	27	5.9	27	69	16	89	38	17	12	31	1.87
44446690--44446765	27	2.8	27	76	7	75	38	17	14	30	1.89
44447198--44447260	27	2.3	27	80	0	72	17	20	20	41	1.91
44448479--44448543	27	2.4	27	78	0	76	23	21	18	36	1.95
44453543--44453718	40	4.4	40	96	0	316	24	27	23	25	2.00
44461531--44461791	40	6.6	40	91	2	393	23	27	22	26	2.00
44461531--44461787	79	3.2	79	90	2	392	23	27	23	25	2.00
44461531--44461791	119	2.2	120	88	3	393	23	27	22	26	2.00
44466961--44467055	44	2.2	44	85	11	124	32	23	12	31	1.92
44470852--44470911	31	2.0	30	83	9	77	36	0	18	45	1.50
44470946--44471020	33	2.3	33	84	6	91	37	18	24	20	1.94
44478946--44479021	31	2.5	31	84	0	107	22	34	27	15	1.95
44491380--44491445	31	2.1	31	88	0	96	24	22	13	39	1.90
44491637--44491777	23	6.0	24	85	5	182	27	21	21	29	1.99
44491651--44491775	47	2.7	47	88	5	173	28	22	20	28	1.99
44491827--44491885	20	3.0	20	92	0	100	33	20	11	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44494554--44494716	43	3.8	43	79	5	161	30	23	15	30	1.96
44501580--44501660	42	1.9	42	94	0	144	22	28	23	25	1.99
44530413--44530670	40	6.5	40	89	0	365	24	22	27	24	2.00
44538513--44538773	40	6.6	40	90	3	386	26	22	26	23	2.00
44538513--44538773	79	3.3	80	88	4	379	26	22	26	23	2.00
44542007--44542355	48	7.3	47	83	11	451	31	8	29	30	1.87
44542205--44542283	40	2.0	40	92	5	133	29	10	29	31	1.90
44542148--44542348	90	2.3	88	87	7	286	32	7	29	29	1.86
44542257--44542353	50	2.0	50	92	8	164	34	8	28	28	1.86
44544461--44544565	44	2.4	42	87	10	133	21	16	36	25	1.94
44544462--44544565	42	2.4	44	92	7	169	21	16	36	25	1.94
44545009--44545156	41	3.7	40	86	3	201	27	23	26	22	2.00
44547955--44548125	47	3.7	46	72	12	143	21	21	29	27	1.99
44555018--44555187	46	3.7	46	77	15	199	21	21	28	28	1.99
44556049--44556089	19	2.2	20	82	8	50	48	2	2	46	1.28
44567151--44567177	9	3.0	9	100	0	54	33	11	33	22	1.89
44570273--44570796	263	2.0	264	96	0	969	32	17	18	30	1.95
44594755--44594800	24	1.9	24	86	0	65	43	4	34	17	1.69
44614357--44614439	31	2.7	31	96	3	152	27	26	16	28	1.97
44614652--44614703	25	2.1	25	89	3	79	28	19	19	32	1.96
44614659--44614728	25	2.8	25	86	4	97	27	22	22	27	1.99
44614759--44614789	16	1.9	16	93	0	53	35	16	19	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44615622--44615832	27	7.8	27	76	3	192	28	9	20	40	1.85
44615621--44615802	81	2.2	82	81	5	244	29	8	21	40	1.83
44615835--44615906	27	2.7	27	80	0	99	44	4	20	30	1.71
44615831--44615922	27	3.4	27	74	5	96	44	6	19	29	1.76
44625813--44626075	40	6.6	40	87	3	316	26	28	20	24	1.99
44633753--44634015	40	6.6	40	87	3	316	26	28	20	24	1.99
44639610--44639695	43	2.0	43	86	0	118	18	16	33	31	1.93
44643730--44643770	16	2.7	15	81	7	55	9	9	19	60	1.55
44646301--44646475	46	3.8	46	76	13	196	27	29	22	20	1.98
44646308--44646476	93	1.8	93	96	0	311	27	29	22	20	1.99
44653397--44654133	47	15.6	47	93	1	1222	33	8	29	29	1.86
44653397--44654133	143	5.2	141	95	1	1249	33	8	29	29	1.86
44653397--44654133	190	3.9	188	95	0	1231	33	8	29	29	1.86
44658694--44658868	46	3.8	46	78	13	205	26	29	22	20	1.99
44658701--44658872	93	1.8	93	97	0	326	26	29	23	20	1.99
44658697--44658888	46	4.2	46	71	14	144	27	29	22	21	1.99
44679068--44679118	24	2.1	24	100	0	102	33	15	3	47	1.64
44679071--44679128	24	2.7	21	84	15	66	32	17	5	44	1.70
44686046--44686088	22	2.0	22	95	0	77	39	23	23	13	1.90
44686138--44686241	27	3.9	27	70	5	84	42	18	18	21	1.90
44686227--44686290	22	2.9	22	80	0	83	37	21	21	18	1.94
44686519--44686593	34	2.2	34	83	11	91	41	21	12	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44686643--44686712	26	2.6	27	79	4	88	28	10	21	40	1.85
44686696--44686825	27	4.8	26	80	6	134	28	10	23	38	1.87
44686721--44686826	54	2.0	54	86	3	151	26	9	24	39	1.86
44687169--44687201	17	2.0	17	88	5	50	18	42	21	18	1.89
44690299--44690521	40	5.6	40	84	3	236	26	28	20	24	1.99
44695436--44695499	22	2.9	22	80	0	83	37	21	21	18	1.94
44695893--44696021	27	4.8	27	77	4	127	29	10	21	38	1.86
44695893--44696021	54	2.4	54	83	5	145	29	10	21	38	1.86
44699435--44699654	40	5.6	39	79	8	173	26	27	20	25	1.99
44709199--44709425	40	5.7	40	92	0	355	32	27	21	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290