genome.fa.s7.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  130  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40935576--40935666	19	4.9	19	90	8	152	36	15	9	38	1.81
40935569--40935666	35	2.7	37	86	12	141	35	16	9	38	1.80
40935590--40935664	17	4.5	15	85	12	62	36	16	9	38	1.80
40935785--40935824	21	2.0	20	85	5	53	10	2	15	72	1.21
40936735--40936866	40	3.3	40	70	6	115	34	23	21	20	1.97
40945939--40946161	46	4.8	46	76	9	195	28	19	28	23	1.98
40953390--40953516	47	2.8	44	81	13	141	29	19	28	22	1.98
40953434--40953562	46	2.8	46	82	4	143	29	17	28	24	1.97
40955490--40956428	132	7.1	132	78	3	867	36	14	15	34	1.88
40955513--40956764	264	4.8	263	77	7	1057	36	14	14	34	1.87
40956453--40956764	132	2.4	132	81	8	334	37	13	13	34	1.85
40962067--40962112	22	2.1	22	95	0	83	26	13	15	45	1.82
40962343--40962397	24	2.3	24	83	0	65	40	5	7	47	1.54
40962566--40962598	17	1.9	17	88	11	50	24	6	9	60	1.49
40967741--40967822	43	1.9	43	94	0	146	20	29	34	15	1.94
40967746--40967815	22	3.2	22	66	18	56	20	25	35	18	1.95
40969386--40969610	40	5.7	40	82	5	260	25	21	26	25	2.00
40969386--40969643	80	3.2	80	79	8	226	26	21	26	25	1.99
40980889--40980922	15	2.3	15	90	10	52	35	0	26	38	1.57
40982412--40982512	28	3.6	28	86	0	139	25	33	13	26	1.94
40982729--40982762	16	2.1	16	100	0	68	5	17	29	47	1.71
40984885--40985067	39	4.6	40	86	6	239	24	23	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40984885--40985067	79	2.3	80	85	7	237	24	23	27	25	2.00
40988024--40988149	8	14.4	8	68	17	54	64	1	3	30	1.21
40988030--40988112	28	2.9	29	82	10	91	63	2	1	32	1.15
40988028--40988112	30	2.9	31	81	13	92	64	2	1	31	1.13
40988047--40988139	28	3.1	31	79	14	88	66	0	5	27	1.13
40988029--40988103	20	3.9	19	78	16	75	64	2	1	32	1.16
40988067--40988140	32	2.4	29	80	12	78	66	0	5	28	1.14
40995546--40995570	5	5.0	5	100	0	50	0	0	20	80	0.72
41000616--41000772	80	2.0	81	84	1	208	31	20	24	23	1.98
41001211--41001527	143	2.2	140	83	5	397	31	18	20	30	1.96
41001622--41001733	46	2.5	46	82	4	129	32	16	16	33	1.92
41007171--41007213	22	2.0	22	100	0	86	30	13	13	41	1.84
41008170--41008199	15	2.0	15	93	0	51	56	6	0	36	1.26
41008122--41008247	63	2.0	63	93	0	216	37	5	8	48	1.58
41008185--41008276	48	1.9	48	88	4	141	30	6	11	51	1.64
41009694--41009733	21	1.9	21	94	0	71	42	0	10	47	1.37
41009716--41009886	68	2.5	68	83	4	218	40	5	19	34	1.74
41009867--41010020	84	1.8	84	84	2	211	38	7	16	37	1.78
41010152--41010313	68	2.4	69	80	8	186	41	7	16	35	1.76
41011793--41011835	18	2.4	18	100	0	86	13	30	32	23	1.93
41015573--41015747	48	3.7	46	79	7	172	18	17	27	36	1.93
41021803--41021922	29	4.2	29	85	6	138	27	27	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41022137--41022175	16	2.4	16	91	0	60	10	20	20	48	1.78
41028505--41028664	48	3.3	48	86	0	212	18	16	29	35	1.93
41030860--41030889	8	3.8	8	90	0	51	6	23	26	43	1.78
41030858--41030894	16	2.3	16	95	0	65	5	21	24	48	1.71
41034093--41034129	18	2.1	19	85	14	53	54	10	0	35	1.36
41035103--41035187	28	3.0	28	86	3	116	27	30	14	28	1.95
41037746--41038048	160	1.9	162	86	2	432	40	7	14	37	1.74
41039390--41039464	24	3.1	24	73	7	80	6	10	56	26	1.58
41042423--41042596	27	6.4	27	82	4	188	28	14	27	29	1.96
41042420--41042572	82	1.9	81	86	4	218	27	16	26	29	1.97
41044588--41044612	12	2.1	12	100	0	50	44	8	16	32	1.76
41056277--41056310	17	2.0	17	100	0	68	35	17	5	41	1.74
41057588--41057626	20	2.1	19	85	9	53	53	17	25	2	1.56
41076677--41076861	79	2.3	82	83	7	229	24	27	22	24	2.00
41076658--41076861	40	5.1	40	81	8	229	24	27	22	25	2.00
41084817--41084853	19	2.0	19	89	5	58	54	10	24	10	1.67
41092441--41092499	27	2.3	25	80	8	64	62	3	1	32	1.21
41092514--41092581	33	2.1	33	97	0	127	42	11	13	32	1.80
41099492--41099714	40	5.6	39	89	6	249	26	27	21	23	1.99
41099473--41099714	80	3.0	79	88	7	339	26	28	21	23	1.99
41099492--41099714	120	1.9	120	87	9	339	26	27	21	23	1.99
41121810--41121991	40	4.6	40	91	1	276	28	26	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41129853--41130077	40	5.7	40	90	3	305	26	27	22	23	2.00
41137662--41137746	44	2.0	43	92	2	143	37	21	11	29	1.89
41141582--41141749	47	3.6	47	77	10	209	29	30	17	22	1.97
41141536--41141799	93	2.8	93	94	0	456	29	30	17	21	1.96
41141527--41141795	46	5.8	46	74	18	245	30	30	17	21	1.96
41144182--41144223	15	2.9	15	85	3	59	59	11	16	11	1.61
41147163--41147428	93	2.9	93	91	1	435	28	30	19	21	1.98
41147210--41147377	47	3.6	47	74	13	184	27	29	19	22	1.98
41147156--41147424	46	5.8	46	71	18	218	28	29	19	21	1.98
41155917--41156025	37	2.9	37	94	0	182	27	29	19	23	1.98
41156234--41156522	47	6.1	47	90	3	425	25	30	11	31	1.92
41156234--41156522	145	2.0	143	89	2	447	25	30	11	31	1.92
41162574--41162729	43	3.7	43	78	5	181	30	25	15	28	1.96
41165837--41165884	20	2.5	20	86	3	62	64	0	6	29	1.18
41165935--41165964	5	5.8	5	96	4	51	76	0	0	23	0.78
41174044--41174103	30	2.0	30	87	6	86	36	8	26	28	1.85
41174758--41174996	49	4.8	49	84	2	298	25	17	28	29	1.97
41174855--41174938	28	3.2	28	65	25	83	23	16	29	29	1.96
41178812--41178855	19	2.3	19	96	0	79	29	15	29	25	1.96
41180537--41180580	22	1.9	23	81	9	54	52	15	0	31	1.44
41183198--41183227	15	2.0	15	93	0	51	30	0	0	70	0.88
41185154--41185264	26	4.6	22	70	15	69	63	6	3	27	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41185266--41185351	26	3.3	26	79	4	84	59	8	2	30	1.39
41185412--41185460	25	2.0	25	83	0	62	65	2	2	30	1.15
41185446--41185608	27	6.2	26	69	9	98	60	6	4	28	1.40
41185455--41185621	26	6.5	25	73	11	90	58	5	4	30	1.43
41187429--41188362	44	20.7	44	68	15	344	28	21	19	31	1.97
41187434--41187682	89	2.8	88	84	4	288	28	21	18	30	1.97
41187429--41187682	133	1.9	133	87	0	373	29	21	18	31	1.97
41187529--41188645	227	4.9	227	88	1	1526	28	20	19	31	1.97
41187746--41188501	44	16.7	45	67	15	197	28	21	19	30	1.97
41187566--41188645	453	2.4	453	89	1	1635	28	20	19	31	1.97
41189559--41189614	28	2.0	28	100	0	112	53	7	21	17	1.67
41189878--41189918	6	6.7	6	88	5	55	0	19	0	80	0.71
41192925--41192970	19	2.4	19	85	7	58	45	13	21	19	1.84
41197109--41197148	2	20.0	2	100	0	80	50	0	50	0	1.00
41197567--41197624	16	3.4	17	83	9	73	43	5	1	50	1.35
41197738--41197771	17	1.9	17	88	5	50	29	0	2	67	1.05
41200901--41200925	9	2.8	9	100	0	50	44	0	12	44	1.41
41202951--41203200	86	2.8	88	89	4	387	35	7	4	53	1.47
41203344--41203397	9	6.0	9	77	0	54	48	14	1	35	1.55
41203344--41203397	18	3.0	18	80	0	63	48	14	1	35	1.55
41203338--41203403	27	2.5	27	82	4	82	48	16	1	33	1.56
41208464--41208492	13	2.1	14	93	6	51	31	0	3	65	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41208907--41208964	21	2.8	21	79	10	73	31	15	48	5	1.67
41209363--41209531	43	4.0	43	78	2	162	27	19	17	35	1.94
41212902--41213055	46	3.3	45	81	11	168	28	15	30	25	1.96
41212851--41213171	47	6.8	48	73	14	163	28	18	29	23	1.98
41218408--41218441	17	2.0	17	100	0	68	23	5	17	52	1.66
41218427--41218467	21	2.0	21	95	0	73	9	14	14	60	1.57
41218410--41218467	17	3.2	17	77	17	62	13	12	15	58	1.63
41220345--41220406	20	3.1	20	77	9	63	33	9	9	46	1.69
41222588--41222778	40	4.8	40	80	0	213	27	27	20	24	1.99
41222569--41222770	80	2.5	79	89	0	287	28	27	19	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290