genome.fa.s7.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  139  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43930185--43930274	46	2.0	46	97	0	171	20	14	30	35	1.92
43933935--43934002	35	1.9	35	100	0	136	41	17	11	29	1.85
43937193--43937255	30	2.1	30	93	0	108	58	12	3	25	1.49
43937283--43937331	22	2.2	22	81	0	62	59	12	10	18	1.60
43952203--43952325	19	6.7	19	86	7	182	36	15	9	38	1.80
43952216--43952322	36	3.0	36	94	0	187	36	15	9	38	1.80
43952203--43952325	55	2.2	54	85	5	167	36	15	9	38	1.80
43953060--43953753	84	8.3	84	91	3	1125	24	22	23	29	1.99
43953060--43953755	251	2.8	249	92	3	1123	24	22	23	29	1.99
43953060--43953753	334	2.1	333	91	3	1119	24	22	23	29	1.99
43954704--43954761	8	7.5	8	77	14	59	1	15	0	82	0.74
43954705--43954776	16	4.4	16	78	16	76	1	18	0	80	0.78
43954704--43954761	30	1.9	30	93	6	100	1	15	0	82	0.74
43960567--43960739	46	3.7	46	79	13	210	21	20	28	29	1.98
43960564--43960734	93	1.8	93	94	0	306	21	21	29	28	1.98
43968137--43968309	45	3.8	46	78	17	198	21	21	28	27	1.99
43968137--43968306	93	1.8	92	94	1	304	21	21	29	27	1.99
43972089--43972154	19	3.2	21	87	6	64	36	19	9	34	1.84
43972106--43972167	19	3.2	19	93	4	97	35	17	8	38	1.80
43977504--43977724	40	5.6	40	78	6	227	24	27	23	24	2.00
43978320--43978482	38	4.3	38	97	0	308	31	27	14	26	1.95
43983528--43983583	6	9.3	6	94	0	76	21	1	10	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43984173--43984207	10	3.6	10	88	3	54	40	0	0	60	0.97
43984209--43984402	99	2.0	100	91	5	322	31	10	12	45	1.75
43986977--43987035	30	2.0	30	100	0	118	20	33	18	27	1.96
43996711--43996762	21	2.5	21	80	0	59	57	13	15	13	1.65
43997581--43997628	23	2.0	24	84	11	64	41	2	0	56	1.11
43999070--43999126	28	2.0	28	100	0	114	50	3	14	31	1.59
44009775--44009999	49	4.5	49	84	2	270	25	17	26	30	1.97
44018029--44018093	18	3.6	18	91	4	105	15	30	38	15	1.88
44022369--44022406	19	2.0	20	89	5	60	36	21	10	31	1.87
44023833--44023899	21	3.2	21	82	2	82	20	25	34	19	1.96
44028369--44028401	6	5.5	6	86	13	50	87	0	12	0	0.53
44028369--44028403	11	3.1	11	91	4	52	85	0	14	0	0.59
44029136--44029272	61	2.3	58	87	7	186	52	2	0	43	1.21
44034301--44034344	5	8.4	5	80	9	52	38	18	2	40	1.63
44035149--44035205	15	3.9	15	88	2	89	35	0	12	52	1.39
44035589--44035686	21	4.4	23	87	8	141	13	22	26	37	1.91
44035576--44035686	44	2.5	44	88	0	159	15	22	25	36	1.93
44038216--44038254	19	2.1	19	100	0	78	38	15	15	30	1.88
44038617--44038737	35	3.5	35	79	0	125	44	16	9	28	1.80
44045126--44045186	30	2.0	29	84	12	79	27	31	18	22	1.97
44046155--44046203	22	2.2	22	85	0	62	38	18	8	34	1.80
44046162--44046204	22	2.0	22	90	0	68	37	18	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44046251--44046306	22	2.5	22	79	0	67	30	25	5	39	1.78
44047384--44047416	17	2.0	17	88	5	50	75	0	21	3	0.93
44049432--44049476	19	2.3	20	88	3	65	28	6	17	46	1.73
44055171--44055551	191	2.0	191	90	1	593	29	22	14	33	1.94
44060577--44060621	21	2.1	21	83	0	54	33	20	2	44	1.63
44061777--44061801	7	3.6	7	100	0	50	28	0	12	60	1.32
44062299--44062363	30	2.2	30	82	0	76	30	43	16	9	1.80
44072399--44072543	37	3.9	37	90	3	220	26	29	19	24	1.98
44072754--44073228	46	10.1	47	79	12	483	27	29	12	30	1.93
44072977--44073056	24	3.4	24	66	22	62	25	32	11	31	1.91
44072754--44073228	98	5.0	97	84	10	576	27	29	12	30	1.93
44073016--44073206	51	3.8	51	84	8	284	28	29	12	29	1.92
44077204--44077591	40	9.8	40	90	3	595	25	29	22	23	1.99
44078874--44079015	37	3.9	37	91	4	227	25	30	19	24	1.98
44078874--44079015	71	2.0	71	90	4	221	25	30	19	24	1.98
44079226--44079707	47	10.1	47	89	4	712	26	30	12	31	1.92
44079257--44079736	240	2.0	233	84	6	628	28	28	11	31	1.92
44083694--44084080	40	9.8	40	92	2	620	25	29	22	22	1.99
44085348--44085486	72	1.9	73	92	1	235	25	30	18	25	1.98
44085348--44085490	37	3.9	37	93	3	236	25	30	19	24	1.98
44085702--44086187	47	10.1	47	85	5	648	26	29	12	32	1.92
44085702--44086187	94	5.0	98	92	4	783	26	29	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44095597--44095736	48	2.9	48	90	0	208	24	22	25	27	2.00
44104780--44104936	43	3.7	43	78	9	160	28	16	22	33	1.95
44105073--44105116	21	2.1	21	100	0	88	47	9	13	29	1.74
44105688--44105716	9	3.2	9	100	0	58	34	0	20	44	1.52
44117311--44117391	20	4.1	20	75	10	69	32	8	9	49	1.66
44124583--44124950	54	6.8	53	78	8	318	40	19	11	29	1.86
44124583--44124950	81	4.6	80	75	8	309	40	19	11	29	1.86
44124583--44124950	27	13.7	26	75	9	267	40	19	11	29	1.86
44125409--44125470	27	2.3	27	83	5	72	24	20	16	38	1.92
44125456--44125526	32	2.2	32	84	0	88	21	23	22	32	1.98
44125742--44125809	27	2.6	27	76	2	66	23	19	27	29	1.98
44126494--44126561	20	3.4	19	88	8	75	42	10	8	38	1.70
44126508--44126562	20	2.8	20	91	5	85	47	10	9	32	1.70
44133662--44133743	41	2.0	41	97	0	155	46	19	13	20	1.83
44136399--44136489	24	3.9	23	78	9	87	25	23	18	32	1.97
44136399--44136471	22	3.2	22	82	5	83	24	23	20	31	1.98
44146498--44146544	22	2.1	23	84	11	62	34	23	14	27	1.94
44156873--44156970	45	2.2	44	83	5	117	30	19	24	25	1.98
44156873--44156983	22	5.0	22	82	6	118	31	18	24	25	1.98
44156893--44156994	44	2.3	45	77	6	118	34	17	21	26	1.96
44175866--44175904	13	3.0	13	84	0	51	69	2	0	28	1.02
44176076--44176114	17	2.2	18	90	4	62	58	0	15	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44184001--44184172	91	1.9	90	89	1	263	38	11	7	42	1.70
44188542--44188573	16	2.0	16	93	0	55	28	0	34	37	1.57
44192126--44192175	26	1.9	26	83	0	64	36	24	24	16	1.94
44192179--44192256	20	3.9	20	91	0	120	43	26	16	12	1.84
44192544--44192608	27	2.4	27	92	0	112	18	15	21	44	1.86
44196076--44196144	20	3.5	20	85	0	84	43	24	18	13	1.86
44203108--44203174	22	3.0	22	76	4	64	22	20	14	41	1.89
44207009--44207121	43	2.6	44	76	8	117	24	16	24	33	1.96
44207017--44207099	42	2.0	43	83	7	107	22	16	25	34	1.95
44210309--44210482	93	1.8	93	86	6	249	24	30	19	25	1.98
44210307--44210579	141	1.9	142	83	6	349	24	28	19	27	1.98
44214128--44214183	21	2.7	21	85	0	76	26	7	35	30	1.83
44215903--44215943	21	2.0	21	85	9	57	21	21	34	21	1.97
44217115--44217332	49	4.6	47	77	8	183	25	29	17	27	1.97
44243534--44243707	47	3.7	47	77	13	180	31	28	17	22	1.96
44243542--44243712	94	1.8	93	91	1	279	30	28	18	22	1.97
44244132--44244191	30	2.0	30	90	6	95	28	26	6	38	1.81
44252290--44252414	39	3.2	39	84	4	171	32	18	24	24	1.97
44252289--44252443	78	2.0	76	82	5	186	30	20	26	22	1.98
44258689--44259001	47	6.6	47	91	2	482	33	8	29	28	1.87
44258689--44259001	96	3.3	96	92	2	517	33	8	29	28	1.87
44259120--44259221	37	2.8	37	92	0	159	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44264259--44264383	39	3.2	39	88	0	187	33	20	24	22	1.97
44264278--44264404	39	3.3	39	78	6	132	29	21	25	22	1.99
44267635--44267667	15	2.1	16	88	5	50	6	24	0	69	1.10
44268085--44268128	21	2.1	21	83	8	54	40	0	4	54	1.21
44268251--44268280	8	3.6	8	91	8	51	33	0	0	66	0.92
44268250--44268279	9	3.4	9	90	9	53	30	0	0	70	0.88
44268363--44268434	30	2.4	31	77	13	78	34	2	2	59	1.26
44268419--44268475	28	2.0	28	80	12	64	21	7	3	68	1.29
44268650--44268689	21	2.0	20	90	5	62	25	5	5	65	1.34
44268781--44268820	15	2.6	16	80	11	57	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290