genome.fa.s7.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  168  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54893901--54894003	39	2.6	39	83	7	136	28	26	20	25	1.99
54893901--54894054	40	3.9	39	77	11	145	27	27	20	25	1.99
54901152--54901334	39	4.6	39	85	4	235	26	28	21	24	1.99
54901154--54901334	79	2.3	79	85	5	233	25	28	21	24	1.99
54903186--54903363	27	6.6	27	74	6	119	28	16	26	29	1.97
54903183--54903363	82	2.2	81	81	4	204	28	16	25	29	1.97
54911137--54911314	27	6.6	27	74	6	119	28	16	26	29	1.97
54911134--54911314	82	2.2	81	81	4	204	28	16	25	29	1.97
54914914--54915023	29	3.8	29	76	4	107	26	30	14	28	1.95
54916500--54916532	16	2.1	16	94	0	57	15	6	30	48	1.69
54919377--54919488	29	3.9	29	73	5	93	25	31	15	27	1.95
54923681--54923762	43	1.9	43	84	0	110	26	18	25	29	1.98
54926526--54926681	43	3.7	41	77	9	134	31	26	16	26	1.96
54929579--54929646	35	1.9	35	88	5	102	29	2	33	33	1.73
54931374--54931795	27	15.6	27	85	1	459	40	19	9	30	1.83
54931374--54931795	54	7.8	54	86	0	540	40	19	9	30	1.83
54931837--54932079	27	9.0	27	82	2	238	39	17	17	25	1.91
54931837--54932067	81	2.9	81	84	1	302	39	18	17	24	1.92
54932328--54932378	27	1.9	26	84	4	66	17	27	19	35	1.94
54932596--54932748	6	24.8	6	71	15	107	18	17	15	49	1.81
54932599--54932706	25	4.6	25	71	19	106	18	18	15	47	1.83
54932596--54932748	31	4.7	30	71	19	87	18	17	15	49	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54932597--54932700	43	2.4	42	87	4	145	18	18	15	48	1.82
54932661--54932754	37	2.5	37	82	0	116	19	17	12	51	1.77
54932597--54932717	43	2.8	42	83	7	129	18	17	14	49	1.80
54934454--54934846	50	7.8	50	76	5	324	26	17	25	31	1.97
54934454--54934846	101	3.9	101	79	4	371	26	17	25	31	1.97
54935411--54935735	179	1.8	179	85	6	462	38	7	19	35	1.79
54943997--54944380	50	7.6	50	76	5	317	26	16	25	32	1.96
54944000--54944337	101	3.3	100	82	2	365	25	16	25	32	1.96
54946872--54946925	28	2.0	27	81	3	63	48	16	3	31	1.64
54948410--54948542	45	3.0	43	71	13	103	31	28	15	24	1.95
54956270--54956368	45	2.3	44	77	8	105	30	25	17	27	1.97
54957461--54957489	14	2.0	15	93	6	51	51	20	0	27	1.47
54958861--54958966	42	2.5	42	84	3	142	33	16	23	26	1.96
54959751--54959803	22	2.4	21	81	9	52	45	24	1	28	1.64
54960384--54960497	42	2.7	42	86	6	142	31	24	18	25	1.97
54960487--54960591	44	2.4	43	84	4	138	35	26	14	23	1.93
54965379--54965434	28	2.0	28	82	6	69	30	21	25	23	1.99
54965603--54965652	26	1.9	26	83	0	64	40	16	20	24	1.91
54966223--54966284	27	2.3	27	91	0	97	30	16	14	38	1.88
54967365--54967394	15	2.0	15	93	0	51	50	13	16	20	1.78
54968689--54968906	110	2.0	110	96	0	400	24	21	20	33	1.97
54972367--54972398	15	2.1	15	100	0	64	43	18	12	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54972547--54972571	13	1.9	13	100	0	50	40	24	4	32	1.73
54974870--54975045	46	3.8	46	79	12	207	29	29	20	20	1.98
54974877--54975048	93	1.8	93	94	0	308	28	29	20	20	1.98
54982461--54982632	93	1.8	93	93	0	299	28	29	20	21	1.98
54982454--54982629	46	3.8	46	78	12	198	29	28	20	21	1.98
54982505--54982648	46	3.1	44	75	15	132	29	28	19	22	1.98
54985378--54985416	17	2.2	18	90	4	62	15	25	43	15	1.86
54985535--54985668	27	5.0	27	88	0	189	25	14	17	42	1.87
54987202--54987244	17	2.5	17	92	0	68	30	25	11	32	1.91
54992633--54992782	67	2.2	67	81	8	171	32	17	28	21	1.96
54992657--54992840	67	2.8	64	77	8	194	29	17	29	22	1.97
55004260--55004299	12	3.3	12	82	0	53	32	0	45	22	1.53
55004885--55004918	16	2.2	16	89	5	52	5	23	2	67	1.26
55010950--55011005	28	2.0	27	83	10	69	32	26	12	28	1.93
55011061--55011183	27	4.6	27	77	6	124	26	17	18	36	1.94
55011061--55011183	54	2.3	54	84	2	158	26	17	18	36	1.94
55011061--55011206	27	5.4	26	74	6	105	26	17	19	36	1.94
55011258--55011327	24	3.0	24	85	4	90	28	27	17	27	1.97
55017304--55017625	46	7.0	46	86	0	412	40	13	23	22	1.90
55018373--55018418	22	2.1	22	87	0	65	47	10	4	36	1.58
55020936--55021086	65	2.3	65	88	3	178	25	25	27	20	1.99
55020964--55021086	65	1.9	65	96	0	228	26	24	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55022117--55022213	43	2.3	43	83	3	115	31	21	15	30	1.94
55026382--55026663	50	5.7	50	81	4	311	25	17	26	29	1.98
55032262--55032299	19	2.0	20	85	15	53	36	0	23	39	1.55
55039431--55039555	46	2.7	46	91	1	198	21	20	27	30	1.98
55039780--55039817	19	2.0	20	85	15	53	36	0	23	39	1.55
55042453--55042549	42	2.3	42	91	3	151	42	6	16	35	1.73
55042630--55042661	14	2.4	14	90	10	50	25	9	25	40	1.85
55042772--55042901	50	2.6	49	83	1	161	26	16	25	31	1.96
55044668--55044728	15	4.1	15	73	0	59	16	16	11	55	1.68
55047199--55047391	55	3.6	53	79	6	192	20	24	18	36	1.95
55051348--55051614	50	5.3	49	73	8	164	26	14	25	33	1.94
55056773--55056947	46	3.8	46	78	14	207	20	20	29	29	1.98
55056770--55056940	92	1.8	93	94	1	308	21	21	29	28	1.98
55064280--55064408	46	2.8	46	91	0	204	19	20	30	30	1.97
55065765--55065829	20	3.2	20	70	8	67	41	29	9	20	1.83
55065763--55065849	42	2.1	42	93	4	149	43	25	10	20	1.83
55065763--55065825	22	3.0	21	70	6	65	44	26	9	19	1.81
55067682--55067829	43	3.4	43	76	8	131	29	14	22	33	1.94
55082888--55083073	40	4.7	40	88	5	243	24	21	27	26	1.99
55082941--55083106	80	2.1	79	85	5	219	25	19	27	27	1.99
55092120--55092153	18	2.0	17	88	11	52	58	0	0	41	0.98
55100462--55100530	33	2.1	33	91	5	113	23	21	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55102728--55102788	29	2.1	29	81	6	70	29	24	4	40	1.76
55113816--55113871	28	2.0	28	96	0	103	37	14	19	28	1.91
55115484--55115544	27	2.3	27	97	2	115	37	16	11	34	1.85
55118416--55118459	16	2.8	16	75	0	52	11	13	0	75	1.06
55125236--55125330	45	2.1	45	98	0	181	36	5	26	31	1.79
55132203--55132338	44	3.2	44	86	8	149	33	22	15	28	1.95
55132222--55132338	44	2.8	44	90	5	179	33	23	14	29	1.94
55148836--55148932	43	2.3	43	82	7	108	29	16	24	28	1.97
55154360--55154441	22	3.6	23	83	5	85	43	21	18	15	1.87
55157253--55157293	18	2.3	18	91	4	66	41	19	2	36	1.65
55166911--55166989	41	1.9	41	84	5	106	24	32	20	22	1.97
55168646--55168779	39	3.5	40	84	4	123	29	30	19	20	1.97
55168674--55168782	39	2.8	39	90	0	164	29	32	17	21	1.96
55172017--55172145	46	2.8	46	87	0	186	20	22	28	27	1.99
55177594--55177623	13	2.3	13	94	0	51	50	3	0	46	1.18
55178255--55178370	43	2.7	43	83	2	153	24	12	25	37	1.91
55178244--55178391	43	3.5	42	77	6	145	29	12	24	34	1.91
55182768--55182828	29	2.1	29	81	6	70	11	6	6	75	1.18
55187318--55187468	53	3.1	47	79	8	160	33	28	13	24	1.94
55189542--55189619	21	3.6	21	69	19	61	39	30	10	19	1.85
55204214--55204423	28	7.5	28	93	1	332	27	11	26	33	1.92
55205966--55208140	812	2.7	812	93	0	3652	26	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55210056--55210125	21	3.2	21	62	18	52	35	25	15	22	1.94
55211651--55211757	27	4.0	26	79	7	97	40	20	21	17	1.92
55211651--55211757	54	2.0	54	83	3	135	40	20	21	17	1.92
55211864--55211926	26	2.3	26	86	5	81	31	11	23	33	1.90
55215551--55215603	21	2.4	23	81	12	67	24	15	1	58	1.47
55215559--55215603	22	2.2	20	84	8	54	22	15	2	60	1.46
55216714--55216762	21	2.3	21	78	3	53	20	30	30	18	1.96
55220230--55220624	151	2.6	151	88	0	567	27	17	24	30	1.97
55220386--55220617	101	2.3	101	84	2	279	27	17	25	30	1.97
55220542--55220619	24	3.2	24	67	13	68	28	14	25	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290