genome.fa.s7.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  165  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53412753--53412804	24	2.2	24	89	0	77	55	9	1	32	1.43
53414723--53414774	24	2.2	24	89	0	77	55	9	1	32	1.43
53421805--53421843	19	2.1	19	90	0	60	58	12	0	28	1.34
53428073--53428260	40	4.7	40	95	0	349	25	21	27	26	2.00
53432197--53432230	14	2.4	14	90	9	52	73	14	8	2	1.19
53434960--53435003	19	2.3	19	88	0	61	40	31	6	20	1.79
53437072--53437241	47	3.7	46	75	13	177	22	19	27	30	1.98
53438850--53438900	27	1.9	26	84	4	66	25	29	3	41	1.73
53441451--53441502	19	2.7	18	74	11	50	59	5	13	21	1.55
53441451--53441503	20	2.7	18	75	13	52	60	5	13	20	1.53
53441998--53442105	47	2.3	46	82	1	117	31	9	12	47	1.72
53445422--53445464	13	3.0	14	83	13	52	76	4	16	2	1.05
53448408--53448467	25	2.7	21	72	18	57	60	1	3	35	1.23
53452506--53452542	17	2.4	16	86	13	51	37	2	8	51	1.46
53459439--53459490	20	2.6	19	76	11	52	67	1	7	23	1.27
53460349--53460404	13	4.5	13	71	13	55	42	14	1	41	1.56
53461355--53461383	4	7.2	4	100	0	58	27	0	0	72	0.85
53465651--53465822	50	3.7	45	78	12	179	25	31	16	27	1.96
53465651--53465965	46	6.7	46	74	13	186	22	29	19	28	1.98
53473314--53473367	20	2.8	18	79	17	56	66	1	7	24	1.27
53474221--53474277	22	2.5	21	78	16	53	50	7	0	42	1.29
53474971--53475016	24	1.9	24	90	0	74	17	23	8	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53480439--53480507	13	5.5	12	71	13	50	40	2	1	55	1.24
53481280--53481339	15	4.0	15	70	8	50	50	0	1	48	1.11
53481373--53481432	31	1.9	31	83	6	77	43	0	0	56	0.99
53482003--53482049	21	2.2	21	84	3	58	72	0	2	25	0.96
53483025--53483074	26	1.9	26	95	0	91	34	22	6	38	1.78
53483020--53483082	26	2.4	26	83	0	90	41	19	4	34	1.72
53484461--53484492	7	4.2	8	88	11	50	25	12	12	50	1.75
53484461--53484492	15	2.1	15	94	0	55	25	12	12	50	1.75
53488040--53488126	23	3.7	23	83	4	95	28	12	16	42	1.84
53488035--53488103	12	5.8	12	71	11	52	28	14	14	42	1.85
53490944--53491080	60	2.3	60	83	6	170	29	19	24	26	1.98
53498905--53498950	20	2.3	21	75	14	53	26	19	28	26	1.99
53498943--53499090	60	2.5	60	83	8	169	27	18	25	27	1.98
53498985--53499083	28	3.4	27	72	22	76	27	18	27	27	1.98
53505314--53505345	16	2.0	16	100	0	64	43	6	0	50	1.27
53510765--53510942	38	4.7	38	82	1	178	17	20	25	36	1.94
53517960--53518135	39	4.5	39	86	0	199	31	27	22	18	1.97
53517955--53518163	78	2.6	79	84	3	269	31	27	21	20	1.98
53517969--53518192	39	5.7	40	82	4	197	29	25	23	22	1.99
53533174--53533245	36	2.0	36	97	0	135	26	22	16	34	1.95
53533877--53533971	28	3.4	28	78	8	97	31	25	17	25	1.97
53533989--53534051	27	2.3	29	83	8	78	25	26	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53534055--53534209	29	5.4	29	70	16	99	23	22	18	35	1.96
53538343--53538382	11	3.5	11	83	12	53	57	5	0	37	1.21
53540666--53540715	2	25.0	2	91	0	82	2	2	48	48	1.24
53544352--53544572	47	4.7	46	79	9	207	23	28	19	28	1.98
53544352--53544614	47	5.6	45	75	10	181	23	27	19	28	1.99
53544352--53544614	140	1.9	141	83	5	345	23	27	19	28	1.99
53546169--53546207	19	2.1	19	95	0	69	30	17	15	35	1.91
53547470--53547515	21	2.3	21	92	7	78	32	8	0	58	1.28
53552977--53553019	22	2.0	22	85	0	59	25	6	51	16	1.69
53553053--53553098	20	2.3	21	82	14	62	26	17	28	28	1.98
53553120--53553239	60	2.0	62	85	6	165	26	19	25	28	1.99
53554680--53554757	40	1.9	40	86	2	111	34	26	15	23	1.94
53554696--53555335	322	2.0	322	88	3	957	35	21	11	32	1.89
53563556--53563597	22	1.9	22	90	0	66	30	19	19	30	1.96
53573513--53573554	15	2.9	15	92	3	68	7	4	11	76	1.15
53575407--53575481	39	1.9	39	83	0	96	45	18	5	30	1.72
53578912--53578977	33	2.0	33	96	0	123	24	16	15	43	1.86
53583597--53583644	15	3.1	15	76	5	51	52	0	16	31	1.45
53584555--53584691	23	5.8	23	81	11	129	24	23	20	32	1.98
53584576--53584669	45	2.1	45	86	7	129	22	24	19	34	1.97
53584528--53584676	68	2.1	72	84	10	191	23	24	18	33	1.97
53592220--53592256	19	1.9	19	88	0	56	16	2	10	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53592892--53592941	18	2.7	19	75	9	59	68	4	2	26	1.18
53592884--53592954	28	2.6	28	80	10	78	63	5	1	29	1.26
53592969--53593029	17	3.5	17	72	14	52	60	3	4	31	1.34
53593544--53593599	18	3.1	17	78	19	51	35	7	0	57	1.26
53593608--53593703	19	4.9	19	69	12	61	30	2	4	63	1.24
53593640--53593683	11	4.1	11	77	16	56	29	2	2	65	1.16
53597598--53597634	19	1.9	19	94	0	65	64	5	0	29	1.15
53603737--53603833	29	3.2	29	70	15	81	34	1	3	61	1.18
53604624--53604665	10	4.2	10	85	8	59	76	0	0	23	0.79
53609615--53609785	93	1.8	93	93	0	297	28	28	21	22	1.99
53609610--53609782	46	3.7	46	76	13	192	29	27	20	22	1.99
53612958--53612996	18	2.2	18	95	0	69	23	0	12	64	1.28
53613188--53613279	44	2.1	44	83	4	114	21	21	22	33	1.97
53619760--53619811	27	1.9	27	96	0	95	40	23	23	13	1.89
53636929--53637323	47	8.4	47	95	0	664	32	8	30	28	1.88
53637441--53637519	37	2.1	37	88	4	115	25	18	30	25	1.98
53639375--53639477	43	2.4	43	100	0	206	22	15	35	26	1.94
53639459--53639532	29	2.6	29	89	4	105	25	16	32	25	1.96
53639877--53640033	39	4.0	39	82	3	163	28	21	26	24	1.99
53639878--53640033	79	2.0	79	82	5	190	27	21	26	25	1.99
53643407--53643847	47	9.4	47	94	0	731	32	8	29	29	1.87
53643966--53644044	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53647486--53647525	6	6.5	6	82	5	53	17	5	0	77	0.94
53652493--53652584	44	2.1	44	83	0	112	22	18	21	36	1.95
53652738--53652764	8	3.4	8	100	0	54	37	14	22	25	1.93
53658612--53658653	22	2.1	19	86	13	57	52	0	0	47	1.00
53667966--53668042	40	1.9	40	92	5	129	37	35	14	12	1.84
53677292--53677326	12	2.9	12	91	0	61	57	0	2	40	1.14
53682227--53682346	56	2.1	56	98	0	231	45	9	23	22	1.81
53683852--53684209	47	7.6	47	90	3	526	33	9	29	27	1.88
53684060--53684181	22	5.3	22	62	21	61	33	11	29	25	1.91
53686491--53686754	40	6.6	40	87	6	227	25	22	26	25	2.00
53686491--53686754	80	3.3	80	85	6	288	25	22	26	25	2.00
53686571--53686758	40	4.7	40	93	2	299	25	23	27	23	2.00
53689346--53689653	47	6.6	46	87	6	392	32	8	28	29	1.87
53689346--53689603	94	2.7	96	93	3	434	32	8	28	30	1.86
53689344--53689650	142	2.2	140	86	8	426	32	8	28	29	1.87
53694222--53694561	44	7.7	46	80	12	312	34	8	29	27	1.86
53701423--53701478	26	2.2	26	100	0	112	30	7	26	35	1.83
53702962--53703014	26	2.0	26	85	7	72	39	22	13	24	1.90
53714774--53714894	48	2.5	48	87	4	172	35	23	18	22	1.95
53726933--53726984	20	2.6	20	96	0	95	23	28	32	15	1.95
53729082--53729127	24	1.9	24	86	8	67	32	26	19	21	1.97
53732241--53732274	16	2.1	16	89	10	52	41	23	26	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53732498--53732611	28	4.1	28	82	2	131	23	17	32	26	1.97
53737969--53738057	27	3.5	25	89	6	101	28	13	32	25	1.94
53737991--53738057	27	2.5	27	100	0	134	31	11	29	26	1.92
53741634--53741677	22	2.0	22	82	8	54	63	9	2	25	1.35
53745392--53745617	42	5.4	42	81	2	229	29	19	23	27	1.98
53745389--53745616	84	2.7	83	79	2	258	28	19	23	27	1.98
53747961--53748041	43	1.9	41	82	5	99	29	24	14	30	1.95
53748049--53748095	24	2.0	24	100	0	94	34	29	8	27	1.87
53756827--53756893	29	2.3	28	87	5	89	61	2	4	31	1.31
53760174--53760199	4	6.5	4	100	0	52	23	0	0	76	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290