genome.fa.s12.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  107  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34752598--34752629	16	2.0	16	100	0	64	18	0	37	43	1.51
34760666--34760888	46	4.8	48	74	16	227	22	18	28	30	1.97
34760664--34760888	93	2.4	93	96	0	423	22	18	28	30	1.97
34764835--34764868	16	2.1	17	88	5	52	23	0	26	50	1.50
34765244--34765402	43	3.7	43	78	9	146	23	18	27	30	1.98
34778014--34778142	45	2.9	45	86	5	158	24	27	22	25	2.00
34778457--34778753	43	6.9	43	93	0	477	28	32	24	14	1.94
34785169--34785334	49	3.5	47	74	10	142	27	18	29	24	1.98
34787122--34787232	6	17.8	6	73	17	84	50	14	16	18	1.78
34787122--34787232	31	3.5	31	92	1	168	50	14	16	18	1.78
34787640--34787889	27	9.3	27	88	1	349	24	20	19	35	1.96
34787640--34787889	81	3.1	81	92	1	394	24	20	19	35	1.96
34787871--34788106	27	8.7	27	78	0	139	28	8	22	39	1.84
34787640--34787943	81	3.8	80	84	6	362	25	19	19	35	1.95
34787873--34788106	54	4.3	54	77	3	229	28	8	23	39	1.84
34787873--34788106	81	2.9	81	80	2	256	28	8	23	39	1.84
34790035--34790068	18	1.9	17	88	5	50	52	11	11	23	1.70
34790056--34790175	6	19.3	6	66	19	50	50	13	15	20	1.78
34790065--34790175	31	3.5	31	86	3	143	50	13	16	19	1.78
34790583--34790859	27	10.3	27	87	4	346	24	20	19	35	1.96
34790843--34791103	27	9.7	27	79	5	231	28	7	23	40	1.81
34795619--34795650	10	3.3	10	95	4	57	31	6	0	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34798052--34798171	48	2.5	48	85	2	154	27	22	15	35	1.94
34805638--34805667	15	2.0	15	93	0	51	50	0	10	40	1.36
34806883--34806969	30	2.9	30	85	0	129	10	26	33	29	1.90
34809418--34809768	176	2.0	177	96	0	641	33	9	25	31	1.88
34810692--34810731	19	2.1	19	90	4	62	80	0	2	17	0.83
34817239--34817265	10	2.7	10	100	0	54	62	0	11	25	1.28
34834628--34834831	43	4.9	43	76	6	163	24	29	19	26	1.98
34834722--34834872	43	3.5	45	77	15	122	24	29	21	24	1.99
34837670--34837870	53	3.7	54	75	5	183	20	23	17	37	1.94
34842588--34842744	41	3.6	45	78	10	159	30	29	14	25	1.94
34843887--34843915	14	2.0	15	93	6	51	51	20	0	27	1.47
34845486--34845546	24	2.4	25	81	15	72	72	6	18	3	1.21
34845516--34845562	20	2.3	21	88	3	69	70	4	21	4	1.22
34845705--34845735	14	2.2	14	94	0	53	38	9	12	38	1.77
34848548--34848584	13	2.7	14	91	4	58	75	2	18	2	1.04
34848548--34848614	14	4.7	13	77	18	62	71	2	22	2	1.13
34850720--34850755	10	3.6	10	84	0	54	19	25	19	36	1.95
34850712--34850756	20	2.2	20	88	0	72	22	26	15	35	1.94
34851474--34851586	55	2.1	55	94	0	199	27	15	23	33	1.95
34858569--34858726	43	3.7	43	76	10	128	31	27	15	24	1.96
34860183--34860219	19	2.0	19	89	5	58	21	8	13	56	1.63
34861394--34861426	17	2.0	17	88	5	50	39	0	15	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34877126--34877157	15	2.0	17	88	11	50	25	0	31	43	1.55
34886804--34886842	18	2.1	19	90	4	62	71	15	2	10	1.23
34886810--34886848	18	2.2	18	85	0	51	74	10	7	7	1.22
34890387--34890421	15	2.3	15	90	0	52	25	2	2	68	1.17
34890399--34890439	21	2.0	21	85	9	57	21	9	0	68	1.18
34892529--34892775	40	6.2	39	86	5	277	22	23	28	25	1.99
34892528--34892752	79	2.8	79	84	4	292	22	23	28	25	1.99
34892529--34892752	119	1.9	120	85	2	317	22	23	29	25	1.99
34892569--34892775	79	2.6	78	84	5	263	23	23	28	25	2.00
34894449--34894501	21	2.6	21	90	3	81	13	41	18	26	1.87
34897845--34897895	20	2.7	19	82	14	54	41	0	21	37	1.54
34898721--34898852	49	2.7	49	81	5	160	31	21	25	21	1.98
34899947--34900077	65	2.0	65	96	0	244	42	16	15	25	1.87
34899960--34900060	30	3.2	30	65	26	73	43	15	16	23	1.87
34902200--34902252	25	2.1	25	100	0	106	28	18	16	35	1.93
34903658--34903699	14	3.0	14	100	0	84	21	14	28	35	1.92
34914327--34914420	45	2.1	45	97	0	179	39	19	14	26	1.90
34915876--34916253	190	2.0	190	98	0	729	31	20	15	32	1.94
34936811--34936865	26	2.1	27	93	3	94	36	14	21	27	1.93
34938407--34938446	20	2.0	20	100	0	80	20	20	40	20	1.92
34941090--34941128	19	2.1	19	85	4	53	17	2	25	53	1.56
34944036--34944082	24	1.9	25	82	4	60	44	6	2	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34944326--34944437	31	3.6	30	68	14	84	40	5	13	41	1.67
34944313--34944475	62	2.7	60	81	6	193	40	4	14	41	1.65
34948800--34948906	52	2.1	52	94	0	187	46	18	8	26	1.77
34950778--34950813	18	2.0	18	94	0	63	22	19	5	52	1.66
34953452--34953519	33	2.1	33	97	0	127	35	5	27	30	1.81
34953485--34953859	47	7.9	47	92	1	588	33	8	29	28	1.87
34953978--34954056	37	2.1	37	88	4	115	25	18	30	25	1.98
34958037--34958167	42	3.0	42	74	14	117	22	16	25	35	1.95
34958087--34958180	42	2.2	42	81	5	109	27	18	24	29	1.98
34958109--34958190	43	1.9	42	82	7	103	25	19	25	29	1.99
34962691--34962817	46	2.8	46	95	0	218	29	29	21	19	1.98
34962699--34962838	46	3.0	45	83	12	126	29	29	20	20	1.98
34970224--34970395	93	1.8	93	94	0	308	28	29	20	20	1.98
34970217--34970392	46	3.8	46	78	12	207	29	29	20	20	1.98
34972396--34972446	25	2.1	24	85	10	68	54	13	9	21	1.67
34977293--34977367	26	2.9	26	80	2	80	33	17	8	41	1.78
34977330--34977380	26	1.9	26	88	4	75	29	19	9	41	1.84
34977539--34977579	6	6.8	6	88	0	64	17	26	0	56	1.41
34977539--34977579	18	2.3	18	100	0	82	17	26	0	56	1.41
34979633--34979684	26	2.1	26	89	7	81	32	7	5	53	1.53
34982540--34982640	44	2.3	43	83	8	116	25	18	21	33	1.97
34983941--34984061	34	3.5	34	80	2	125	29	21	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34983971--34984065	35	2.7	35	83	1	120	30	20	16	32	1.95
34984051--34984109	18	3.3	18	79	9	75	38	16	20	23	1.92
34984453--34984514	27	2.3	27	85	0	79	22	19	16	41	1.89
34984507--34984823	27	11.7	27	88	0	382	38	17	13	31	1.88
34984506--34984814	54	5.7	54	89	0	456	38	17	12	31	1.87
34984506--34984814	81	3.8	81	90	0	483	38	17	12	31	1.87
34987904--34988081	27	6.6	27	83	3	205	26	15	28	29	1.96
34987905--34988060	82	1.9	81	88	3	233	26	15	28	29	1.96
34987901--34988081	82	2.2	81	83	2	229	27	15	27	29	1.96
35003232--35003453	48	4.6	48	81	3	225	28	20	27	23	1.99
35003229--35003501	96	2.8	96	80	3	282	27	21	27	23	1.99
35003222--35003504	144	2.0	144	85	4	392	27	21	27	24	1.99
35011218--35011254	16	2.4	15	90	4	56	45	0	0	54	1.00
35011937--35011971	17	2.0	18	88	5	54	28	5	2	62	1.32
35014151--35014183	5	6.8	5	93	6	59	84	0	15	0	0.61
35017727--35017892	27	6.1	27	82	0	179	31	19	21	27	1.97
35018027--35018104	27	2.9	26	85	10	97	21	23	23	32	1.98
35019333--35019372	18	2.1	18	86	9	53	35	2	10	52	1.48
35026736--35026767	14	2.4	13	90	10	55	18	6	12	62	1.50
35028614--35028791	27	6.6	27	82	3	178	29	28	14	27	1.95
35029273--35029302	14	2.1	14	100	0	60	43	0	6	50	1.28
35030723--35031021	47	6.4	47	73	9	206	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35030765--35030979	91	2.4	91	92	0	358	26	27	18	26	1.98
35030765--35031071	47	6.7	45	71	10	178	26	28	17	27	1.98
35036779--35037118	47	7.2	47	75	10	286	24	30	18	26	1.98
35036768--35037165	142	2.8	141	81	4	412	25	29	18	26	1.98
35036768--35037125	96	3.8	92	77	9	312	24	30	18	25	1.98
35042373--35042728	47	7.6	47	75	10	277	24	30	18	26	1.98
35042373--35042770	142	2.8	140	79	5	412	24	29	19	26	1.98
35042407--35042732	95	3.4	95	80	7	360	23	30	19	26	1.98
35042407--35042772	47	7.7	49	72	10	248	23	29	19	26	1.98
35046165--35046203	5	8.0	5	94	5	71	20	0	0	79	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320