genome.fa.s12.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  97  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31161258--31161426	24	7.0	24	89	4	234	29	23	21	26	1.99
31167571--31167684	39	2.9	39	90	0	174	27	28	21	23	1.99
31169740--31169801	27	2.3	27	94	0	106	64	12	17	4	1.44
31172219--31172254	18	2.0	18	94	0	63	27	16	30	25	1.97
31174719--31174876	23	7.0	22	72	16	108	23	19	21	35	1.96
31174719--31174878	45	3.5	45	78	5	171	23	20	21	35	1.96
31174808--31174878	22	3.2	22	77	15	74	21	22	19	36	1.95
31174728--31174876	68	2.2	68	80	11	171	22	19	21	36	1.95
31175986--31176131	67	2.2	67	89	0	229	23	21	25	30	1.99
31183869--31184026	23	7.0	23	72	11	121	25	18	18	36	1.95
31183878--31184036	68	2.3	66	80	10	167	25	18	18	37	1.94
31183869--31184026	45	3.5	45	79	6	142	25	18	18	36	1.95
31189944--31189979	19	1.9	19	94	5	65	41	16	0	41	1.48
31190387--31190418	13	2.5	13	100	0	64	0	21	0	78	0.76
31194019--31194118	51	2.0	51	80	4	112	33	29	16	22	1.95
31202081--31202109	14	2.1	14	100	0	58	27	24	13	34	1.93
31211517--31211575	30	2.0	30	82	0	73	30	11	22	35	1.90
31214864--31215053	95	2.0	95	96	0	353	32	21	18	27	1.97
31216479--31216592	55	2.1	55	93	3	194	33	7	20	38	1.81
31222196--31222237	21	2.0	22	85	4	59	42	0	0	57	0.99
31222646--31222677	15	2.1	15	94	0	55	37	0	0	62	0.95
31228187--31228226	20	2.0	20	95	0	71	42	10	5	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31228518--31228548	14	2.3	13	94	5	53	25	9	0	64	1.24
31234425--31234552	47	2.7	48	85	9	167	28	20	28	23	1.99
31234429--31234552	46	2.7	44	86	8	151	29	20	28	22	1.98
31234521--31234633	38	2.7	44	81	12	116	28	22	27	22	1.99
31240738--31240826	45	2.0	45	97	0	169	17	15	32	33	1.92
31241469--31241522	21	2.5	22	75	3	56	20	35	31	12	1.90
31243873--31244043	93	1.8	93	91	0	279	28	28	21	22	1.99
31243868--31244046	46	3.9	46	76	12	195	29	27	20	22	1.99
31249374--31249544	93	1.8	93	93	0	297	28	27	21	22	1.99
31249369--31249541	46	3.7	46	76	13	192	28	26	21	23	1.99
31255608--31255671	11	5.4	13	71	21	59	51	14	0	34	1.42
31255608--31255680	23	3.2	23	92	0	119	52	13	0	34	1.41
31262246--31262352	42	2.5	41	86	3	142	29	17	22	29	1.97
31269804--31269953	42	3.5	42	83	3	176	31	17	24	27	1.97
31270375--31270410	17	2.1	17	100	0	72	25	11	16	47	1.79
31270909--31270996	42	2.1	42	93	0	149	23	25	30	20	1.98
31273156--31273239	42	2.0	42	81	11	100	30	2	2	64	1.19
31274195--31274226	14	2.3	14	94	0	55	59	9	0	31	1.29
31275910--31275956	22	2.1	22	81	14	53	40	0	0	59	0.97
31276457--31276483	13	2.1	13	100	0	54	29	7	22	40	1.81
31285247--31285351	35	3.0	34	84	8	138	39	12	11	37	1.79
31285250--31285351	18	5.7	18	89	4	145	39	12	10	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31285242--31285351	53	2.0	55	91	3	179	39	11	11	37	1.79
31285426--31285479	17	3.5	17	71	28	50	35	1	0	62	1.06
31290886--31290934	21	2.3	22	89	3	82	83	0	12	4	0.77
31290889--31290932	13	3.3	13	87	3	52	81	0	13	4	0.83
31290909--31290938	13	2.2	14	94	5	53	80	0	13	6	0.91
31290887--31290940	21	2.6	20	88	8	81	83	0	11	5	0.80
31291820--31291999	44	4.1	44	76	8	177	31	14	24	30	1.95
31291991--31292349	121	3.0	121	92	0	592	32	16	18	31	1.94
31292964--31293088	35	3.5	37	90	7	195	37	11	14	36	1.82
31292964--31293088	18	6.9	18	89	5	191	37	11	14	36	1.82
31292964--31293088	53	2.3	54	95	2	234	37	11	14	36	1.82
31293569--31293619	16	3.2	16	75	22	54	39	1	0	58	1.09
31293546--31293622	32	2.3	35	78	10	90	37	5	0	57	1.21
31293605--31293653	26	1.9	25	83	4	62	38	2	0	59	1.09
31312731--31312794	12	5.5	12	70	12	53	46	1	1	50	1.20
31312726--31312794	23	3.1	22	73	15	63	47	1	1	49	1.19
31312764--31312818	29	2.0	28	83	13	71	49	0	3	47	1.19
31317883--31317914	15	2.1	15	100	0	64	34	18	12	34	1.89
31319115--31319197	43	1.9	44	97	2	159	34	12	12	40	1.79
31330870--31330925	26	2.2	26	96	0	103	32	7	25	35	1.83
31334363--31334540	27	6.6	27	83	3	196	26	15	28	29	1.96
31334364--31334514	82	1.9	81	88	4	232	27	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31336005--31336064	30	2.0	30	86	0	84	26	25	8	40	1.84
31338967--31339024	30	2.0	30	83	10	75	31	0	22	46	1.52
31341843--31342029	49	3.8	49	84	1	257	25	16	27	31	1.96
31341835--31342013	99	1.8	99	96	0	331	24	16	29	30	1.96
31344265--31344393	45	2.9	45	90	0	195	20	20	22	36	1.95
31347685--31347721	19	1.9	19	100	0	74	43	16	8	32	1.77
31350057--31350425	109	3.4	109	84	1	479	31	25	18	23	1.98
31353417--31353479	20	3.0	20	76	15	65	42	23	23	9	1.83
31356983--31357342	46	7.6	49	78	9	263	27	17	29	25	1.97
31357461--31357520	30	2.0	30	100	0	120	46	10	20	23	1.80
31357461--31357533	30	2.4	30	90	6	103	41	9	23	26	1.85
31358593--31358632	21	2.0	21	85	5	55	12	37	27	22	1.90
31364619--31365082	47	9.7	47	94	2	784	32	8	29	29	1.87
31364619--31365082	96	4.9	96	95	1	810	32	8	29	29	1.87
31364619--31365082	143	3.3	143	94	3	801	32	8	29	29	1.87
31365201--31365316	37	3.1	37	92	0	187	23	18	31	25	1.97
31367206--31367310	39	2.6	39	84	4	120	27	21	27	22	1.99
31367167--31367310	40	3.6	40	80	11	145	25	22	27	23	2.00
31367285--31367601	40	7.9	40	90	0	445	24	20	27	26	1.99
31367247--31367601	120	3.0	120	88	1	489	24	21	28	26	1.99
31371105--31371568	47	9.7	47	94	2	784	32	8	29	29	1.87
31371105--31371568	96	4.9	96	95	1	810	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31371105--31371568	143	3.3	143	94	3	801	32	8	29	29	1.87
31371687--31371800	36	3.1	37	91	3	178	22	19	31	26	1.98
31373651--31373792	39	3.6	40	80	11	143	26	22	27	23	2.00
31373770--31374083	40	7.8	40	90	0	439	24	20	28	26	1.99
31373730--31374083	120	3.0	120	87	1	480	24	20	28	26	1.99
31377592--31378055	47	9.7	47	94	2	784	32	8	29	29	1.87
31377592--31378055	96	4.9	96	95	1	810	32	8	29	29	1.87
31377592--31378055	143	3.3	143	94	3	801	32	8	29	29	1.87
31378174--31378289	37	3.1	37	94	0	196	22	18	32	25	1.97
31384989--31385147	27	5.9	27	84	10	193	18	25	22	33	1.97
31384986--31385147	54	3.0	54	92	2	256	18	25	22	33	1.97
31384989--31385147	81	2.0	80	85	6	214	18	25	22	33	1.97
31403901--31404032	23	5.7	23	70	13	76	40	23	13	21	1.89
31403951--31404046	46	2.1	46	82	3	113	40	22	15	20	1.90
31403951--31404046	23	4.2	23	78	5	86	40	22	15	20	1.90
31406613--31406829	46	4.7	47	78	11	202	28	18	29	24	1.98
31408172--31408329	68	2.3	68	77	11	160	20	27	15	35	1.94
31419246--31419284	19	2.1	19	100	0	78	10	15	10	64	1.50
31425921--31425979	29	2.0	29	100	0	118	54	13	3	28	1.55
31431570--31431778	47	4.5	46	80	8	194	22	30	19	27	1.98
31433048--31433170	45	2.7	45	83	0	129	36	30	13	20	1.90
31434690--31434879	55	3.5	53	76	2	173	21	21	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31444550--31444599	25	2.0	25	100	0	100	36	8	12	44	1.71
31447718--31447747	12	2.5	12	94	0	51	6	26	36	30	1.82
31450821--31450900	29	2.8	28	85	7	108	27	33	15	23	1.94
31450821--31450900	28	2.8	28	85	7	108	27	33	15	23	1.94
31451082--31451129	16	3.0	15	85	11	60	18	25	12	43	1.85
31453358--31453589	49	4.7	49	78	3	239	30	25	17	26	1.97
31453836--31453889	27	2.0	27	85	0	72	38	14	7	38	1.75
31457511--31457547	18	2.1	18	100	0	74	32	0	16	51	1.45
31470573--31470649	19	3.9	19	79	11	84	48	16	2	32	1.61
31474318--31474409	29	3.2	29	96	0	175	25	14	31	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320