genome.fa.s12.2.7.7.80.10.50.1000.302.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  302  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96097292--96097352	30	2.0	30	81	6	70	67	3	3	26	1.22
96097310--96097356	15	3.1	15	78	9	51	65	2	2	29	1.15
96097507--96097666	3	53.0	3	72	8	119	60	1	6	31	1.32
96097506--96097651	38	3.5	41	72	20	74	61	2	6	29	1.33
96099265--96099704	44	9.8	44	69	16	199	30	20	17	32	1.95
96099260--96099715	85	5.1	85	69	15	287	29	19	17	33	1.95
96099267--96099715	180	2.5	180	88	2	670	29	20	17	32	1.95
96099408--96099704	45	6.6	45	72	12	209	29	20	17	31	1.96
96100545--96100573	14	2.0	15	93	6	51	0	17	0	82	0.66
96101889--96101917	13	2.1	14	93	6	51	51	0	3	44	1.18
96102265--96102317	25	2.1	26	82	3	63	49	1	1	47	1.23
96102431--96102492	31	2.0	32	84	9	83	45	0	6	48	1.28
96103422--96103469	15	3.3	15	82	2	62	37	2	12	47	1.53
96104104--96104144	19	2.2	19	87	12	59	46	0	24	29	1.53
96107655--96107700	19	2.4	19	89	7	67	47	10	19	21	1.80
96109606--96109672	23	2.8	23	80	13	82	74	2	1	20	1.03
96109666--96109731	3	22.0	3	80	6	62	65	6	1	27	1.25
96109895--96109933	3	13.0	3	88	0	60	61	0	2	35	1.10
96111528--96112067	267	2.0	267	100	0	1080	32	12	26	28	1.93
96113752--96113790	18	2.1	19	85	4	53	43	15	15	25	1.86
96115274--96115306	16	2.1	16	88	11	50	48	0	0	51	1.00
96117791--96117818	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96123272--96123325	18	3.3	16	75	12	56	44	0	0	55	0.99
96130633--96130696	18	3.4	18	67	12	56	32	21	26	18	1.97
96130635--96130762	39	3.3	39	92	2	204	35	21	28	14	1.92
96134160--96134198	19	2.0	20	90	5	62	46	17	0	35	1.49
96135193--96135231	14	2.5	15	84	16	53	41	25	0	33	1.56
96136552--96136589	5	7.6	5	93	0	67	60	21	0	18	1.36
96136587--96136653	5	13.4	5	96	0	125	59	1	0	38	1.06
96140287--96140324	13	2.7	15	84	12	53	0	23	0	76	0.79
96141698--96141790	18	5.2	18	80	0	114	29	20	16	34	1.94
96141698--96141792	36	2.6	36	88	0	145	29	20	16	33	1.95
96147399--96147439	16	2.6	16	78	21	50	63	0	4	31	1.15
96154936--96154973	18	2.1	18	90	0	58	42	5	0	52	1.24
96179687--96179728	17	2.5	17	84	7	50	45	2	0	52	1.13
96183309--96183344	5	7.2	5	93	0	54	38	58	0	2	1.13
96186319--96186401	41	2.0	41	92	0	139	19	15	16	48	1.82
96195033--96195078	23	2.0	23	83	8	58	52	2	0	45	1.13
96196896--96196928	3	11.0	3	93	0	57	66	3	0	30	1.06
96205617--96205647	15	2.1	15	100	0	62	6	22	25	45	1.76
96213469--96213516	18	2.7	18	86	0	60	39	18	8	33	1.81
96213700--96213827	53	2.3	56	78	12	154	41	19	21	17	1.91
96213867--96213891	12	2.1	12	100	0	50	40	20	24	16	1.91
96215021--96215066	8	5.6	8	79	5	56	60	4	0	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96215023--96215071	25	2.0	25	95	0	89	61	4	0	34	1.15
96216332--96216397	31	2.2	29	84	12	82	39	1	6	53	1.35
96217237--96217279	19	2.2	20	84	12	54	44	0	2	53	1.13
96217442--96217509	34	2.0	35	82	8	86	38	11	10	39	1.76
96230578--96230636	21	2.8	21	78	12	59	69	8	0	22	1.15
96230668--96230734	21	3.2	21	68	12	57	61	0	1	37	1.05
96238903--96238943	3	13.7	3	94	0	73	0	34	0	65	0.93
96249334--96249367	9	3.8	9	88	0	50	0	23	35	41	1.55
96255066--96255102	20	2.0	20	89	10	60	54	2	0	43	1.14
96255281--96255335	16	3.4	16	87	5	76	36	7	25	30	1.83
96255317--96255410	44	2.1	44	86	4	125	32	5	25	36	1.79
96256033--96256110	40	2.0	40	92	0	129	32	16	7	43	1.76
96260320--96260357	18	2.1	18	85	9	51	21	10	15	52	1.72
96261042--96261070	6	4.8	6	100	0	58	34	0	65	0	0.93
96280190--96280218	11	2.6	11	100	0	58	0	10	0	89	0.48
96290603--96290639	17	2.1	18	85	14	51	59	0	2	37	1.12
96296865--96296900	4	9.0	4	100	0	72	75	0	25	0	0.81
96302078--96302111	2	17.0	2	93	0	59	52	0	47	0	1.00
96303032--96303744	174	4.1	174	89	2	1047	36	9	10	43	1.72
96303597--96303891	147	2.0	148	95	0	538	32	10	10	46	1.72
96303745--96304063	174	1.8	173	88	2	487	34	9	10	45	1.71
96303072--96304063	349	3.0	323	86	5	1206	35	9	10	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96304202--96304703	199	2.5	202	81	6	601	36	9	11	42	1.75
96305231--96305720	204	2.4	204	83	4	596	38	8	10	42	1.70
96308699--96308739	18	2.3	18	87	4	57	34	0	4	60	1.18
96308824--96308892	34	2.0	34	83	10	88	55	4	0	40	1.20
96320263--96320443	94	1.9	94	90	2	292	29	16	11	43	1.82
96320632--96320716	23	3.9	23	70	27	85	50	1	25	22	1.56
96320961--96321055	43	2.2	43	83	5	113	43	2	16	37	1.60
96321157--96321235	33	2.3	35	91	6	128	32	2	8	55	1.44
96321803--96321871	36	1.9	36	84	0	93	53	11	7	27	1.63
96324124--96324156	17	1.9	17	100	0	66	27	18	24	30	1.98
96324357--96324436	41	2.0	40	92	2	133	46	11	7	35	1.68
96324769--96324802	16	2.2	16	89	5	52	41	2	0	55	1.15
96325649--96325691	22	1.9	22	85	4	59	37	6	2	53	1.41
96335020--96335053	13	2.4	15	90	9	54	64	0	0	35	0.94
96335616--96335660	23	2.0	23	83	16	58	75	6	0	17	1.01
96335633--96335664	17	1.9	16	93	6	55	75	6	0	18	1.01
96351357--96351504	76	1.9	76	90	1	233	47	14	19	18	1.83
96361679--96361707	3	9.7	3	100	0	58	34	0	0	65	0.93
96365150--96365181	16	1.9	17	93	6	57	75	0	25	0	0.81
96378585--96378679	49	1.9	49	89	4	147	41	14	22	22	1.90
96380649--96380794	40	3.7	39	78	11	129	27	21	20	30	1.98
96381004--96381049	22	2.1	22	83	0	56	21	0	32	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96381009--96381043	15	2.4	15	90	4	54	20	0	34	45	1.51
96381068--96381098	14	2.2	14	94	0	53	16	3	41	38	1.64
96381102--96381150	14	3.4	14	82	2	62	20	0	36	42	1.52
96381312--96381359	15	3.3	15	77	16	55	20	0	33	45	1.52
96381307--96381356	22	2.3	21	77	16	57	24	0	30	46	1.53
96381386--96381425	21	1.9	21	89	0	62	22	5	15	57	1.57
96381415--96381469	22	2.5	23	79	8	69	20	1	41	36	1.63
96381819--96381865	21	2.2	21	88	0	67	25	4	21	48	1.68
96384792--96384847	22	2.4	24	76	11	62	25	8	7	58	1.53
96385457--96385501	22	2.0	22	91	0	72	48	15	2	33	1.57
96390055--96390099	22	2.0	22	91	0	72	48	15	2	33	1.57
96397208--96397248	21	2.0	21	100	0	82	29	14	12	43	1.82
96397211--96397256	21	2.2	21	92	0	74	30	13	10	45	1.77
96398374--96398433	30	2.0	30	90	0	93	38	8	25	28	1.84
96405945--96406004	30	2.0	30	90	0	93	38	8	25	28	1.84
96409137--96409162	13	2.0	13	100	0	52	38	7	7	46	1.61
96409612--96409659	21	2.2	22	82	14	64	47	0	16	35	1.47
96410363--96410453	32	2.8	31	79	12	112	30	10	25	32	1.90
96413794--96413845	18	2.9	18	72	11	52	28	19	13	38	1.89
96414361--96414386	13	2.0	13	100	0	52	15	30	46	7	1.74
96436327--96436378	10	5.1	10	83	2	59	23	5	1	69	1.20
96452908--96452979	27	2.6	29	80	10	87	23	1	0	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96452917--96452982	6	9.7	7	80	19	70	24	1	0	74	0.91
96452913--96452982	21	3.3	21	93	2	113	24	1	0	74	0.90
96453872--96454056	93	2.0	93	86	0	262	25	12	27	34	1.93
96454712--96454761	10	5.0	10	81	13	59	22	8	2	68	1.26
96459582--96459627	24	2.0	23	83	12	58	45	0	4	50	1.21
96459750--96459807	3	19.3	3	75	19	50	32	1	1	63	1.14
96460044--96460080	18	2.1	18	89	0	56	43	0	0	56	0.99
96460086--96460137	17	3.1	16	83	8	59	78	0	17	3	0.89
96460099--96460137	16	2.5	15	84	12	51	82	0	17	0	0.68
96460548--96460639	44	2.1	44	85	4	123	21	20	23	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320