genome.fa.s12.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  139  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45545725--45546130	73	5.2	79	84	9	498	48	13	17	20	1.81
45545939--45546129	49	3.9	45	82	11	150	47	14	19	19	1.83
45546248--45546321	27	2.8	27	84	10	98	36	20	24	18	1.95
45546272--45546329	27	2.1	27	84	6	73	37	25	20	15	1.92
45546486--45546544	22	2.7	22	81	0	64	32	22	25	20	1.98
45546632--45546713	27	3.1	26	85	5	101	37	19	24	18	1.94
45546913--45547046	27	5.0	27	86	0	169	24	20	19	35	1.95
45547063--45547548	27	18.0	27	82	6	538	40	8	22	28	1.82
45569402--45569649	124	2.0	124	100	0	496	41	20	12	25	1.86
45570133--45570315	40	4.6	40	91	1	278	26	27	23	22	1.99
45574913--45575062	55	2.8	54	80	4	149	26	15	29	28	1.96
45574885--45575062	27	6.6	27	77	6	146	25	15	28	30	1.96
45574886--45575041	82	1.9	81	81	6	190	25	16	28	30	1.96
45582920--45583069	55	2.8	54	80	4	149	26	15	29	28	1.96
45582892--45583069	27	6.6	27	77	6	146	25	15	28	30	1.96
45582893--45583048	82	1.9	81	81	6	190	25	16	28	30	1.96
45586709--45586762	19	2.8	20	80	5	65	44	24	22	9	1.81
45594047--45594090	22	2.0	22	86	4	63	56	0	9	34	1.31
45603873--45603926	25	2.2	25	100	0	108	27	37	11	24	1.89
45608826--45608869	22	2.0	22	100	0	88	50	27	4	18	1.66
45614307--45614332	12	2.2	12	100	0	52	46	15	0	38	1.46
45615715--45615808	18	4.7	21	79	11	65	40	17	6	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45615715--45615772	22	2.6	22	81	7	64	41	17	5	36	1.72
45615751--45615859	19	5.9	19	91	6	181	36	15	10	37	1.81
45615754--45615867	18	6.3	19	89	8	132	37	14	11	36	1.82
45615744--45615859	36	3.2	38	86	11	181	36	16	9	37	1.81
45616201--45616354	45	3.5	44	82	7	195	24	27	14	33	1.95
45616368--45616662	78	3.8	78	89	0	421	25	24	19	31	1.98
45616490--45616861	199	1.9	199	89	1	584	26	24	18	31	1.97
45616412--45616924	277	1.9	277	90	1	823	24	24	18	32	1.97
45616689--45617651	78	12.3	78	87	1	1349	26	23	17	33	1.96
45617651--45618093	84	5.3	84	87	5	630	24	21	23	30	1.99
45617651--45618051	166	2.4	164	87	6	574	23	22	24	29	1.99
45617944--45618083	43	3.3	43	69	18	130	26	20	21	31	1.98
45619041--45619107	19	3.4	19	86	10	91	5	13	0	80	0.88
45634421--45634564	1	144.0	1	100	0	288	100	0	0	0	0.00
45645077--45645130	18	3.3	18	66	28	57	22	7	48	22	1.75
45645077--45645140	30	2.1	30	94	0	110	18	6	50	25	1.70
45645977--45646011	18	1.9	18	94	0	61	71	0	8	20	1.11
45645939--45646142	83	2.4	85	86	8	281	39	17	15	27	1.90
45646084--45646514	72	6.1	71	90	6	625	32	22	16	28	1.96
45646083--45646514	211	2.1	210	89	5	667	32	21	16	28	1.96
45658498--45658593	25	3.9	24	76	15	81	58	5	6	30	1.45
45658581--45658714	23	5.6	25	75	11	93	55	2	5	35	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45658510--45658621	28	4.2	27	74	15	85	58	4	6	31	1.43
45658577--45658671	25	3.8	25	77	8	86	52	4	6	36	1.46
45658972--45659010	16	2.4	16	86	0	51	43	28	5	23	1.75
45659171--45659269	30	3.3	30	88	0	153	19	5	48	27	1.69
45659634--45659739	43	2.4	43	82	3	140	23	21	25	29	1.99
45662075--45662126	16	3.2	16	89	7	79	28	0	34	36	1.58
45662456--45662502	16	3.0	16	78	12	53	51	2	0	46	1.13
45662340--45662876	120	4.5	121	95	0	877	50	5	2	41	1.40
45662601--45662635	18	2.0	17	88	5	52	54	0	0	45	0.99
45662627--45662656	16	1.9	15	93	6	51	50	10	0	40	1.36
45662557--45662865	59	5.2	58	65	16	164	50	4	3	41	1.40
45662858--45663025	47	3.7	46	70	18	143	47	3	3	45	1.37
45662873--45663049	91	1.9	92	88	4	254	49	3	2	44	1.33
45663014--45663052	17	2.5	15	84	12	51	58	0	0	41	0.98
45668004--45668152	53	2.8	54	81	4	176	34	20	22	22	1.97
45668221--45668296	33	2.5	30	85	12	102	30	13	30	26	1.94
45672330--45672407	38	2.1	38	85	0	102	19	19	26	34	1.95
45673896--45673951	19	2.9	18	75	19	51	35	3	0	60	1.14
45673904--45673944	21	2.0	20	86	13	57	36	4	0	58	1.20
45673902--45674016	36	3.1	39	66	19	102	33	7	0	58	1.33
45673782--45674189	71	5.7	71	85	8	506	32	9	0	57	1.37
45680281--45680447	54	3.0	55	80	11	216	24	23	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45680673--45680706	16	2.1	16	100	0	68	41	5	0	52	1.25
45681643--45681680	19	2.0	19	100	0	76	36	15	10	36	1.82
45685088--45685125	16	2.4	16	83	12	51	47	0	2	50	1.15
45687708--45687787	22	3.6	22	81	0	97	23	27	16	32	1.96
45701242--45701583	47	7.3	47	90	0	540	34	8	29	27	1.86
45701314--45701391	25	3.2	25	65	17	74	34	5	29	30	1.79
45709923--45709988	22	3.0	22	88	4	89	24	28	16	30	1.97
45712460--45712520	18	3.3	18	79	4	77	73	1	0	24	0.92
45712997--45713026	14	2.1	14	100	0	60	33	46	13	6	1.69
45719098--45719142	20	2.2	21	84	4	56	20	2	4	73	1.11
45720605--45720651	25	1.9	24	82	4	58	40	6	6	46	1.55
45722007--45722051	22	2.0	23	82	4	56	62	2	2	33	1.20
45724483--45724520	13	2.8	13	92	8	58	39	10	7	42	1.69
45726547--45726731	79	2.3	82	84	7	238	25	27	22	24	2.00
45726528--45726731	40	5.1	40	82	8	238	25	27	22	25	2.00
45729812--45729933	61	2.0	61	95	0	217	31	13	23	31	1.93
45730604--45730634	16	1.9	16	93	0	53	45	6	3	45	1.45
45733625--45733790	79	2.2	78	85	4	221	28	9	7	54	1.60
45734268--45734339	35	2.1	35	100	0	144	47	8	13	30	1.73
45735619--45735654	16	2.3	15	90	4	54	61	0	2	36	1.11
45735793--45735868	30	2.5	30	82	2	89	50	3	6	39	1.47
45735811--45735868	30	1.9	30	89	6	91	53	5	5	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45735863--45735934	30	2.4	30	86	4	101	38	4	12	44	1.62
45736239--45736302	28	2.3	29	81	5	78	37	3	3	56	1.31
45738133--45738190	28	2.0	29	87	9	84	46	0	1	51	1.11
45738164--45738291	58	2.2	58	85	2	168	51	5	0	42	1.25
45740977--45741242	46	5.7	47	75	11	203	22	28	19	29	1.98
45741580--45741637	30	1.9	30	92	0	98	29	25	12	32	1.92
45748615--45748880	46	5.7	47	75	11	194	22	28	19	28	1.98
45749218--45749275	30	1.9	30	92	0	98	27	25	13	32	1.94
45751502--45751532	16	1.9	16	93	0	53	51	19	9	19	1.74
45752772--45752815	10	4.4	10	88	5	63	68	2	6	22	1.25
45753761--45753805	23	1.9	24	86	4	65	73	2	17	6	1.15
45754396--45754483	37	2.4	37	100	0	176	29	14	22	32	1.94
45755086--45755267	40	4.6	40	83	9	212	24	21	28	25	1.99
45755136--45755300	79	2.1	79	84	6	210	25	21	27	25	1.99
45757293--45757321	14	2.0	15	93	6	51	62	13	0	24	1.32
45758050--45758143	25	3.9	25	89	6	142	72	0	2	25	0.96
45758056--45758150	7	12.4	7	80	16	100	71	1	2	25	1.03
45758052--45758142	3	30.7	3	70	25	61	71	0	2	26	0.97
45761870--45761914	10	4.5	10	86	5	56	66	2	8	22	1.30
45764355--45764394	11	3.7	11	86	6	64	60	0	20	20	1.37
45764356--45764396	21	2.0	21	100	0	82	58	0	21	19	1.39
45765492--45765561	18	3.9	18	92	0	113	34	11	12	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45765987--45766225	72	3.3	72	91	1	374	24	5	14	55	1.61
45778025--45778168	40	3.6	40	82	10	152	27	27	20	24	1.99
45781462--45781676	29	7.4	29	78	5	150	22	27	13	36	1.92
45781462--45781676	58	3.7	58	73	9	179	22	27	13	36	1.92
45781450--45781675	87	2.6	86	79	5	240	22	27	14	36	1.92
45793043--45793114	9	8.4	9	72	15	55	37	2	1	58	1.21
45793045--45793117	20	4.1	18	71	13	69	35	2	1	60	1.20
45793047--45793148	18	5.5	18	72	11	82	35	1	3	58	1.28
45793055--45793253	34	5.7	32	72	15	96	33	3	4	59	1.33
45793135--45793189	24	2.2	25	90	6	85	32	5	3	58	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320