genome.fa.s12.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  147  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48283791--48283891	27	3.8	27	88	3	125	41	19	15	22	1.90
48283817--48283895	27	2.9	27	92	0	131	39	18	16	25	1.91
48287132--48287247	27	4.3	27	84	4	121	38	18	19	22	1.93
48287132--48287247	54	2.1	54	82	6	146	38	18	19	22	1.93
48292576--48292758	39	4.7	39	84	1	233	25	24	18	31	1.97
48292579--48292758	78	2.3	78	88	0	261	26	24	17	31	1.97
48299271--48299493	119	1.9	120	84	6	301	25	27	22	24	2.00
48299269--48299493	40	5.7	40	85	6	287	25	28	22	24	2.00
48310032--48310099	29	2.3	29	85	5	93	27	30	13	27	1.94
48309921--48310250	174	1.9	174	92	0	561	31	25	14	29	1.95
48326051--48326294	44	5.6	44	77	8	223	24	18	25	31	1.98
48326176--48326280	43	2.4	43	81	10	117	24	18	22	34	1.96
48332284--48332415	55	2.4	55	76	0	147	33	31	21	12	1.92
48343468--48343621	43	3.6	42	76	12	145	24	18	25	31	1.98
48353910--48354057	67	2.2	69	78	10	162	32	16	28	22	1.96
48353934--48354117	67	2.8	64	75	8	167	29	17	29	22	1.97
48356498--48356557	29	2.1	29	96	0	111	16	25	15	43	1.86
48362501--48362532	15	2.0	17	88	11	50	25	0	31	43	1.55
48363098--48363137	20	2.0	21	90	5	64	35	7	12	45	1.70
48376722--48376939	40	5.5	40	91	2	325	24	27	23	24	2.00
48381593--48381764	93	1.8	93	93	2	301	29	29	19	21	1.98
48381587--48381761	46	3.8	46	79	14	207	30	29	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48387805--48388022	40	5.5	40	90	2	307	25	27	23	23	2.00
48390913--48391011	50	1.9	52	91	4	166	40	11	15	33	1.82
48399726--48399788	31	2.0	31	87	0	90	22	25	15	36	1.94
48399973--48400102	25	5.2	25	87	10	160	26	23	19	31	1.98
48399974--48400104	26	5.2	26	87	11	168	26	22	19	32	1.97
48400007--48400102	51	1.9	48	93	6	165	28	22	20	28	1.99
48400153--48400219	20	3.3	20	93	0	116	32	20	11	34	1.90
48400153--48400208	11	5.5	11	71	16	57	32	19	12	35	1.89
48401850--48402025	46	3.8	44	80	8	192	21	19	30	28	1.98
48401846--48402017	93	1.8	93	92	0	290	20	20	30	27	1.98
48404947--48405002	15	3.7	15	88	7	87	12	16	10	60	1.58
48407392--48407567	46	3.8	45	76	11	169	22	19	27	30	1.98
48407388--48407559	93	1.8	93	88	2	265	22	20	28	29	1.98
48412003--48412311	40	7.7	40	94	0	519	31	20	26	22	1.98
48415209--48415380	48	3.6	48	79	6	181	23	28	16	30	1.97
48419740--48419852	27	4.2	27	86	5	149	15	25	21	37	1.93
48427631--48427738	54	2.0	53	87	1	153	17	25	21	36	1.95
48427631--48427738	27	4.0	26	85	5	135	17	25	21	36	1.95
48432499--48432784	48	6.0	47	78	9	267	26	29	17	26	1.97
48432496--48432774	96	2.9	93	81	10	305	25	29	17	27	1.97
48432503--48432784	144	2.0	144	85	5	392	26	29	16	26	1.97
48435585--48435996	130	3.1	130	86	2	495	25	18	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48438804--48438853	11	4.5	11	78	14	50	18	16	8	58	1.62
48442366--48442443	29	2.7	28	84	11	104	25	15	30	28	1.96
48442396--48442722	173	1.9	174	92	0	548	30	14	23	31	1.94
48444542--48444596	25	2.3	23	78	12	58	43	3	16	36	1.65
48444657--48444726	22	2.9	24	81	10	72	60	4	5	30	1.39
48444742--48444875	25	5.6	25	71	13	93	55	3	5	35	1.40
48444917--48444984	29	2.3	29	92	0	109	11	50	29	8	1.69
48445183--48445221	16	2.4	16	86	0	51	43	28	5	23	1.75
48445388--48445473	30	2.9	30	96	0	154	17	5	50	26	1.69
48445408--48445463	18	3.4	18	68	27	61	19	7	48	25	1.74
48450290--48450331	13	3.3	13	80	6	50	33	2	0	64	1.07
48450283--48450334	25	2.1	25	85	0	68	38	1	0	59	1.08
48450290--48450342	25	2.1	25	85	0	70	39	1	0	58	1.09
48451664--48451705	21	2.0	21	81	9	50	38	14	2	45	1.58
48451820--48451900	40	2.0	40	95	0	144	48	9	4	37	1.58
48458144--48458370	46	4.9	46	84	3	269	21	25	14	39	1.91
48458144--48458364	93	2.4	91	86	2	289	21	24	14	38	1.91
48463286--48463506	93	2.4	91	87	2	298	20	25	15	38	1.91
48463286--48463509	46	4.8	46	87	3	290	20	25	15	39	1.91
48465621--48465672	11	4.7	11	76	9	52	63	3	0	32	1.12
48466726--48466808	29	2.8	30	80	14	100	27	25	18	28	1.98
48466832--48466923	42	2.2	42	100	0	184	33	20	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468022--48468205	27	6.7	26	75	13	95	30	9	19	40	1.82
48468049--48468205	54	2.8	56	79	11	162	30	8	18	42	1.79
48468106--48468233	27	4.8	26	78	8	82	27	10	20	42	1.84
48468237--48468328	27	3.4	27	86	5	132	39	7	25	28	1.83
48468227--48468345	54	2.2	53	78	11	134	36	9	21	31	1.85
48470702--48470793	42	2.2	42	98	0	175	33	21	14	30	1.93
48470940--48471007	25	2.7	26	84	4	86	30	23	23	22	1.99
48472943--48472980	20	2.0	19	85	10	51	50	18	28	2	1.61
48475038--48475097	30	2.0	30	83	6	77	26	25	8	40	1.84
48478310--48478386	27	2.9	27	80	3	93	40	16	12	29	1.86
48481374--48481676	40	7.6	40	90	2	396	24	20	28	27	1.99
48489109--48489411	40	7.6	40	90	2	396	24	20	28	27	1.99
48499156--48499229	27	2.8	27	89	2	105	36	18	13	31	1.90
48500555--48500817	40	6.6	40	88	3	325	26	27	20	24	1.99
48507604--48507634	16	1.9	16	93	0	53	48	3	0	48	1.17
48508834--48509028	55	3.6	54	76	2	185	18	24	18	38	1.93
48512942--48513083	27	5.3	27	81	3	99	38	21	9	29	1.86
48513062--48513191	27	4.8	28	87	1	144	31	23	6	37	1.82
48513035--48513191	54	2.9	55	83	1	167	32	24	7	35	1.84
48513151--48513280	27	4.9	27	79	9	106	42	23	4	29	1.74
48513089--48513253	54	3.1	54	82	3	174	36	25	5	32	1.79
48513032--48513246	81	2.7	80	75	2	191	36	23	6	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48513179--48513307	27	4.9	27	82	3	118	41	22	6	30	1.78
48513292--48513495	27	7.6	27	88	2	293	33	19	21	26	1.97
48513213--48513495	54	5.3	53	81	7	199	34	20	17	27	1.95
48514162--48514263	27	3.8	27	83	5	107	19	22	20	37	1.95
48514399--48514530	6	21.3	6	73	17	110	18	15	15	49	1.80
48514399--48514510	31	3.6	31	97	1	206	18	16	16	49	1.80
48529555--48529676	50	2.4	49	91	4	208	27	18	26	27	1.98
48540402--48540449	22	2.2	22	100	0	96	58	8	12	20	1.60
48543067--48543108	21	2.0	21	100	0	84	57	4	14	23	1.56
48545755--48545862	27	4.0	27	83	9	114	38	18	9	33	1.83
48547643--48547690	23	2.1	23	100	0	96	31	12	8	47	1.71
48547872--48547969	46	2.1	46	81	3	108	26	16	26	30	1.97
48547884--48547986	46	2.2	46	82	3	127	28	13	26	32	1.94
48553229--48553319	45	2.0	45	89	4	139	30	23	20	25	1.98
48553229--48553359	45	2.9	45	81	5	138	32	19	21	26	1.97
48555756--48556019	48	5.5	49	83	3	290	27	28	18	25	1.98
48555756--48556019	144	1.8	143	84	8	356	27	28	18	25	1.98
48558402--48558513	40	2.8	40	89	4	154	21	24	29	25	1.99
48558502--48558533	16	2.0	16	100	0	64	18	25	25	31	1.98
48558462--48558573	56	2.0	56	89	0	170	21	24	25	28	1.99
48558518--48558660	40	3.6	39	88	3	189	21	23	27	27	1.99
48558402--48558649	136	1.8	136	85	6	349	21	24	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48566580--48566877	40	7.5	40	87	3	381	22	24	27	24	2.00
48566580--48566877	79	3.7	78	87	5	386	22	24	27	24	2.00
48566580--48566877	119	2.5	118	86	6	395	22	24	27	24	2.00
48571250--48571430	73	2.5	72	78	6	193	18	23	22	35	1.96
48571411--48571493	25	3.3	25	70	0	76	26	25	14	33	1.94
48573716--48573893	27	6.6	27	84	5	180	29	28	15	26	1.96
48573737--48573892	82	1.9	81	88	3	233	29	28	15	26	1.96
48580928--48581105	27	6.6	27	84	5	180	29	28	15	26	1.96
48580949--48581104	82	1.9	81	88	3	233	29	28	15	26	1.96
48587097--48587135	19	2.1	19	85	0	51	12	20	10	56	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320