genome.fa.s12.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  129  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42237456--42237599	50	3.0	48	81	9	157	56	6	6	29	1.50
42237447--42237628	47	3.7	47	80	7	168	57	5	7	30	1.49
42238754--42238806	15	3.5	15	78	14	63	16	1	33	47	1.58
42238801--42238866	19	3.4	19	76	19	64	12	0	34	53	1.38
42238802--42238869	20	3.5	20	81	16	72	11	0	35	52	1.38
42240553--42240591	2	19.5	2	100	0	78	51	0	48	0	1.00
42250890--42250922	15	2.2	15	100	0	66	36	18	15	30	1.91
42251151--42251198	25	1.9	25	83	8	62	60	2	0	37	1.09
42253787--42253826	18	2.2	19	86	4	55	27	7	22	42	1.80
42260354--42260462	48	2.3	48	86	0	146	33	27	19	20	1.96
42262016--42262318	80	3.8	79	88	3	385	26	28	20	24	1.99
42262046--42262318	120	2.3	120	87	4	381	27	29	20	23	1.99
42262016--42262265	40	6.3	40	94	0	394	26	29	20	23	1.99
42262250--42262327	40	1.9	41	82	10	97	26	28	21	23	1.99
42270357--42270506	55	2.8	54	80	4	149	26	15	29	28	1.96
42270329--42270506	27	6.6	27	77	6	146	25	15	28	30	1.96
42270330--42270485	82	1.9	81	81	6	190	25	16	28	30	1.96
42273216--42273518	80	3.8	79	88	3	385	26	28	20	24	1.99
42273246--42273518	120	2.3	120	87	4	381	27	29	20	23	1.99
42273216--42273465	40	6.3	40	94	0	394	26	29	20	23	1.99
42273450--42273527	40	1.9	41	82	10	97	26	28	21	23	1.99
42281203--42281409	39	5.3	40	90	4	287	26	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42281203--42281409	79	2.6	79	87	3	303	26	28	20	23	1.99
42281394--42281471	40	1.9	41	82	10	97	26	28	21	23	1.99
42294206--42294627	126	3.3	128	89	7	591	29	26	16	27	1.97
42294199--42295169	175	5.6	175	83	7	847	29	26	16	28	1.97
42294199--42295169	131	7.5	132	86	5	915	29	26	16	28	1.97
42294316--42295169	306	2.8	307	95	3	1525	29	26	16	27	1.97
42295371--42295643	133	2.1	132	97	2	512	28	23	21	27	1.99
42295666--42295799	41	3.2	41	63	22	96	24	22	27	25	2.00
42295593--42295853	86	3.1	86	92	3	413	26	24	23	24	2.00
42299972--42300015	19	2.3	20	84	7	56	40	11	20	27	1.86
42302170--42302212	22	1.9	23	90	4	70	58	4	2	34	1.32
42303599--42303623	12	2.1	12	100	0	50	84	0	16	0	0.63
42321782--42321806	13	1.9	13	100	0	50	0	28	0	72	0.86
42323373--42323488	25	4.7	24	75	10	83	25	20	19	34	1.96
42329221--42329270	20	2.6	19	84	9	57	36	22	0	42	1.54
42330910--42330971	28	2.2	28	88	0	97	32	9	33	24	1.88
42334818--42334886	21	3.4	21	71	15	72	36	1	7	55	1.37
42334796--42334852	27	2.0	29	83	10	73	35	1	8	54	1.42
42334873--42334903	15	2.1	14	94	5	53	35	3	6	54	1.42
42341833--42341947	44	2.6	45	84	2	142	36	13	21	27	1.92
42353131--42353168	20	1.9	20	88	0	58	36	31	13	18	1.89
42354365--42354424	30	2.0	30	90	0	93	26	1	8	63	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42362635--42362663	14	2.1	14	100	0	58	34	6	0	58	1.25
42368283--42368356	31	2.4	31	81	0	85	39	9	6	44	1.63
42369645--42369691	21	2.2	22	88	3	69	21	36	19	23	1.95
42375904--42375955	16	3.3	15	71	23	52	51	1	13	32	1.52
42375892--42375957	33	2.0	33	96	0	123	48	4	13	33	1.63
42378596--42378707	43	2.6	43	83	8	131	26	15	24	33	1.95
42393427--42393500	29	2.6	29	86	4	96	27	16	31	25	1.96
42413865--42413900	17	2.1	17	100	0	72	30	0	11	58	1.33
42416549--42416576	6	4.7	6	100	0	56	85	0	14	0	0.59
42419774--42419983	40	5.3	40	91	0	305	23	21	29	25	1.99
42426068--42426154	43	2.0	43	100	0	174	42	16	4	36	1.68
42428141--42428256	40	2.8	41	83	12	148	36	16	18	29	1.92
42430056--42430080	13	1.9	13	100	0	50	44	0	16	40	1.47
42430149--42430203	28	2.0	28	96	0	101	32	12	12	41	1.81
42440099--42440309	108	2.0	108	99	0	413	36	13	23	26	1.92
42444066--42444176	40	2.8	40	94	1	195	21	32	27	18	1.97
42449771--42449924	29	5.3	29	92	0	247	29	31	13	25	1.94
42459174--42459218	22	2.0	23	86	4	65	55	35	0	8	1.31
42460857--42460884	14	2.0	14	100	0	56	28	7	21	42	1.79
42465584--42465624	21	2.0	21	90	0	64	39	0	24	36	1.56
42471513--42471690	40	4.5	40	86	6	213	25	28	23	23	1.99
42474413--42474477	34	1.9	34	87	6	96	21	26	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42490243--42490349	29	3.7	29	77	6	119	26	28	14	30	1.95
42490245--42490357	58	2.0	57	84	5	147	26	26	14	32	1.94
42490243--42490361	29	4.2	29	76	6	109	27	26	13	32	1.94
42490439--42490476	19	2.0	19	89	0	58	15	31	18	34	1.92
42491870--42491902	8	4.1	8	96	0	57	12	0	30	57	1.35
42494539--42494624	24	3.6	24	79	4	95	15	22	20	41	1.89
42494539--42494602	23	2.7	23	85	2	74	14	25	20	40	1.89
42496268--42496442	68	2.6	65	78	10	163	33	12	28	25	1.92
42496401--42496530	70	1.9	68	87	3	188	34	19	21	24	1.96
42496410--42496556	68	2.1	68	79	7	154	35	18	21	25	1.95
42497941--42498011	27	2.6	27	88	0	106	26	11	28	33	1.91
42501314--42501424	47	2.4	47	85	0	141	36	9	29	25	1.86
42503020--42503298	40	7.0	40	86	1	290	22	21	29	27	1.99
42507428--42507538	47	2.4	47	87	0	141	35	9	29	25	1.88
42507467--42507538	22	3.1	22	67	18	56	36	9	30	23	1.87
42507447--42507550	47	2.2	47	89	0	154	33	9	29	26	1.88
42507464--42507572	47	2.3	47	83	0	137	33	11	30	23	1.91
42509134--42509388	77	3.4	75	82	8	284	23	20	29	26	1.99
42509134--42509388	38	6.7	38	85	6	277	23	20	29	26	1.99
42513505--42513615	47	2.4	47	87	0	141	35	9	29	25	1.88
42513544--42513615	22	3.1	22	67	18	56	36	9	30	23	1.87
42513524--42513627	47	2.2	47	89	0	154	33	9	29	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42513541--42513649	47	2.3	47	83	0	137	33	11	30	23	1.91
42515185--42515447	40	7.0	39	79	10	230	23	21	28	26	1.99
42515307--42515370	31	2.0	32	96	3	121	21	18	31	28	1.97
42519565--42519675	47	2.4	47	87	0	141	35	9	29	25	1.88
42519604--42519675	22	3.1	22	67	18	56	36	9	30	23	1.87
42519584--42519687	47	2.2	47	89	0	154	33	9	29	26	1.88
42519601--42519709	47	2.3	47	83	0	137	33	11	30	23	1.91
42521263--42521574	40	8.0	40	86	5	343	23	22	28	25	1.99
42521263--42521581	120	2.7	115	83	4	383	22	22	29	25	1.99
42525707--42525817	47	2.4	47	89	0	159	34	9	30	25	1.88
42525734--42525808	22	3.3	22	68	17	62	33	10	30	25	1.90
42525707--42525851	47	3.1	47	83	4	141	33	10	31	25	1.89
42525825--42525913	46	1.9	46	83	0	115	33	11	31	23	1.90
42527612--42527673	26	2.4	27	82	15	85	40	17	27	14	1.89
42528574--42528607	15	2.3	14	85	14	50	38	0	32	29	1.58
42529827--42529962	29	4.8	29	70	14	88	26	16	19	37	1.93
42529890--42529970	29	2.8	29	80	0	90	24	18	17	39	1.92
42530326--42530520	31	6.3	31	98	0	372	53	3	20	23	1.59
42536698--42536770	29	2.5	29	73	10	78	17	23	35	23	1.95
42537266--42537297	16	2.0	16	93	0	55	28	3	50	18	1.62
42553066--42553142	21	3.6	21	77	16	70	23	2	1	72	1.04
42553064--42553155	5	17.4	5	77	13	71	23	2	1	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42556564--42556623	10	6.0	10	84	11	79	21	8	1	68	1.25
42562829--42562886	27	2.1	27	93	0	98	36	17	17	29	1.92
42564823--42565044	46	4.7	46	78	9	191	24	29	19	27	1.98
42565137--42565241	52	2.0	52	100	0	210	44	22	1	30	1.64
42578530--42578580	16	3.1	16	70	25	52	29	31	19	19	1.97
42580343--42580513	46	3.7	46	75	6	157	23	28	19	28	1.98
42581219--42581243	13	1.9	13	100	0	50	64	16	4	16	1.44
42583829--42583884	27	2.1	27	89	0	85	30	14	19	35	1.91
42583874--42584152	81	3.4	80	80	8	307	40	17	9	32	1.82
42583848--42584209	27	13.4	27	71	13	160	40	17	9	32	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320