genome.fa.s12.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  154  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50800962--50801212	94	2.7	91	81	11	267	24	28	17	29	1.97
50803637--50803765	47	2.8	46	77	9	145	24	20	24	29	1.99
50810398--50810568	46	3.7	45	77	15	188	32	26	18	23	1.97
50810403--50810573	93	1.8	93	92	2	290	31	26	18	22	1.97
50810991--50811050	30	2.0	30	90	0	93	30	25	8	36	1.85
50814003--50814229	50	4.8	46	74	14	178	21	29	19	29	1.98
50814300--50814339	19	2.1	19	100	0	80	27	25	5	42	1.75
50816486--50816548	30	2.1	30	93	0	108	23	17	9	49	1.76
50821725--50821914	96	2.0	96	92	0	317	37	16	33	12	1.85
50823574--50823643	35	2.0	35	97	0	131	35	22	8	32	1.85
50824542--50824602	24	2.5	24	77	12	63	55	3	1	39	1.26
50825438--50825471	16	2.3	14	90	10	50	26	0	2	70	1.01
50828706--50828800	43	2.2	43	96	0	172	18	33	25	22	1.97
50830521--50830692	47	3.6	47	80	9	192	25	30	19	25	1.98
50833430--50833607	27	6.6	27	82	3	196	26	14	28	30	1.95
50833433--50833586	82	1.9	81	87	4	229	27	14	27	30	1.95
50833427--50833607	82	2.2	81	81	2	220	27	14	27	30	1.95
50841484--50841661	27	6.6	27	83	3	205	26	15	28	29	1.96
50841485--50841640	82	1.9	81	88	3	233	26	15	28	29	1.96
50841481--50841661	82	2.2	81	83	2	229	27	15	27	29	1.96
50843714--50843742	2	14.5	2	100	0	58	0	48	0	51	1.00
50848349--50848741	40	9.8	40	92	2	574	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50850558--50850618	19	3.1	20	72	13	54	36	18	8	37	1.80
50850571--50850678	20	5.5	19	84	6	69	37	17	9	36	1.82
50850608--50850678	20	3.5	20	90	3	108	38	16	9	35	1.82
50850562--50850678	40	3.0	40	78	13	109	37	17	9	35	1.82
50853483--50853550	25	2.7	25	81	0	82	30	17	17	33	1.94
50854318--50854461	48	3.0	47	85	4	180	35	25	17	21	1.95
50864835--50864982	43	3.4	43	74	7	113	32	24	18	25	1.97
50864881--50864982	42	2.4	43	78	3	107	32	24	18	24	1.97
50865427--50865568	73	1.9	73	98	0	275	38	26	4	31	1.75
50871555--50871712	43	3.7	43	80	9	162	31	26	17	25	1.97
50875808--50875992	40	4.6	40	78	2	192	25	27	22	24	2.00
50884242--50884386	44	3.4	45	78	12	144	26	22	17	32	1.97
50889090--50889123	17	1.9	17	88	5	50	44	5	11	38	1.65
50901578--50901629	10	5.1	10	90	2	77	21	5	0	73	1.04
50904901--50905001	29	3.5	29	89	1	150	26	14	28	29	1.95
50919918--50920019	42	2.4	43	80	6	109	31	25	15	27	1.96
50921517--50921684	46	3.6	45	78	10	169	22	27	20	29	1.98
50921517--50921687	94	1.8	92	85	7	238	22	28	20	29	1.98
50927921--50927960	21	2.0	21	90	5	64	20	27	40	12	1.88
50939334--50939503	92	1.8	93	86	5	245	23	28	20	27	1.99
50950412--50950506	40	2.4	39	84	3	120	14	11	36	36	1.83
50956476--50956502	13	2.1	13	100	0	54	14	37	40	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50967296--50967355	8	7.4	8	80	14	61	38	0	0	61	0.96
50967305--50967355	5	10.0	5	87	12	77	41	0	0	58	0.98
50990965--50991013	22	2.2	22	88	3	71	28	34	16	20	1.94
50993747--50993790	19	2.3	19	100	0	88	50	9	4	36	1.55
50995013--50995194	38	4.8	38	80	2	159	13	21	26	37	1.91
50995013--50995270	114	2.3	114	80	1	266	15	20	25	37	1.92
51001347--51001534	38	4.9	38	79	5	146	13	19	28	37	1.90
51001506--51001544	16	2.4	16	91	0	60	23	23	20	33	1.97
51001525--51001609	38	2.2	38	87	4	118	10	18	29	41	1.84
51020639--51020821	39	4.7	39	89	0	276	29	29	20	20	1.98
51026336--51026405	27	2.6	27	95	2	113	31	28	12	27	1.93
51026336--51026433	28	3.5	28	90	2	135	31	28	13	26	1.94
51030731--51030801	35	2.0	35	91	0	115	26	25	11	36	1.90
51033524--51034217	47	14.6	47	93	2	1136	32	8	30	29	1.87
51033524--51034217	96	7.3	96	94	2	1179	32	8	30	29	1.87
51033524--51034217	143	4.9	143	93	2	1171	32	8	30	29	1.87
51040447--51040517	35	2.0	35	89	5	108	26	23	11	38	1.89
51042876--51043007	50	2.6	52	85	3	178	38	12	14	34	1.84
51043024--51043100	39	2.0	39	94	0	136	46	16	10	25	1.79
51044165--51044287	44	2.8	42	77	15	117	34	26	19	20	1.96
51045975--51046119	44	3.4	43	75	17	119	29	22	19	28	1.98
51053617--51053774	44	3.7	43	77	12	155	31	27	18	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51056630--51056815	40	4.7	40	84	5	209	25	25	22	26	2.00
51056597--51056815	80	2.8	81	76	11	211	25	25	21	27	1.99
51064591--51064816	40	5.7	40	86	4	253	26	26	20	25	1.99
51075298--51075386	38	2.4	38	86	5	119	40	29	19	11	1.86
51075367--51075405	16	2.4	16	91	0	60	33	20	23	23	1.97
51075377--51075563	38	4.9	38	76	3	153	37	28	19	13	1.91
51075390--51075491	37	2.7	38	83	3	116	37	29	18	14	1.91
51081614--51081877	38	6.9	38	77	1	181	37	26	21	14	1.92
51083054--51083097	19	2.3	19	100	0	88	36	4	9	50	1.55
51095803--51096115	27	11.6	27	81	5	305	38	22	7	30	1.83
51095803--51096079	107	2.6	106	84	5	333	39	21	7	30	1.82
51096100--51096240	27	5.2	27	91	0	192	36	17	19	26	1.93
51096576--51096635	27	2.3	27	85	2	77	25	21	18	35	1.96
51096755--51096842	6	14.3	6	68	17	56	19	15	14	50	1.79
51096755--51096833	31	2.5	31	83	0	113	18	16	13	50	1.78
51099995--51100039	2	22.5	2	81	0	54	44	2	6	46	1.42
51100738--51100883	39	3.7	39	91	3	238	19	21	30	29	1.97
51105121--51105305	38	4.9	38	79	2	147	16	19	25	38	1.92
51105124--51105309	76	2.4	76	80	1	194	15	19	26	38	1.91
51105140--51105309	38	4.5	38	79	2	171	15	20	25	38	1.92
51107077--51107211	66	2.0	66	94	0	234	23	15	12	48	1.79
51109782--51109905	27	4.6	27	93	2	149	30	29	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51109782--51109905	55	2.3	54	91	1	194	30	29	13	26	1.94
51117797--51117948	27	5.6	27	93	3	241	30	28	13	26	1.94
51117797--51117948	55	2.8	55	94	0	259	30	28	13	26	1.94
51120285--51120371	40	2.2	40	85	0	129	39	17	20	22	1.92
51120670--51120779	53	2.1	53	87	0	157	33	16	15	34	1.90
51121185--51121232	25	1.9	25	83	8	62	18	0	43	37	1.51
51121210--51121282	21	3.4	22	78	12	80	20	1	42	35	1.61
51121213--51121270	14	4.1	14	78	12	57	20	0	43	36	1.52
51121210--51121330	7	17.0	7	71	12	50	20	0	38	40	1.59
51121472--51121521	22	2.3	21	79	3	55	24	0	30	46	1.53
51121513--51121559	14	3.3	15	82	8	62	14	2	48	34	1.56
51122079--51122126	8	6.2	8	85	4	55	70	2	0	27	0.98
51122086--51122120	15	2.4	14	90	4	52	74	2	0	22	0.95
51122079--51122112	7	4.7	7	96	3	59	73	0	0	26	0.83
51122121--51122145	7	3.6	7	100	0	50	40	0	0	60	0.97
51122272--51122394	41	3.1	39	74	9	113	41	14	17	26	1.88
51125858--51126011	43	3.6	43	84	3	193	24	19	29	26	1.98
51125791--51126011	86	2.6	86	81	5	238	25	18	28	27	1.98
51127302--51127384	41	2.0	41	100	0	166	55	7	16	20	1.65
51127839--51127867	8	3.8	8	95	4	51	55	0	0	44	0.99
51138386--51138419	15	2.3	15	89	0	50	50	5	26	17	1.69
51138392--51138422	15	2.1	15	100	0	62	45	6	19	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51147780--51147824	20	2.2	20	88	0	63	35	13	2	48	1.54
51157233--51157276	19	2.3	19	100	0	88	50	15	9	25	1.74
51161952--51161991	16	2.6	15	84	7	53	5	10	0	85	0.75
51162652--51162766	3	39.0	3	73	6	83	32	7	0	59	1.32
51162895--51162930	15	2.4	15	90	0	54	38	11	0	50	1.38
51162895--51162938	15	2.9	15	89	0	52	36	13	0	50	1.42
51163002--51163065	29	2.1	29	83	11	76	17	9	4	68	1.34
51174884--51175600	45	15.8	44	69	14	399	33	17	20	28	1.96
51174885--51175186	137	2.2	136	89	0	460	33	19	19	28	1.96
51174885--51175237	136	2.6	137	86	2	471	32	19	20	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320