genome.fa.s12.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  126  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41072341--41072375	17	2.0	18	88	5	54	71	8	8	11	1.31
41085609--41085668	25	2.3	26	81	13	70	60	1	3	35	1.23
41089513--41089740	113	2.0	113	94	0	402	34	16	17	31	1.92
41091992--41092034	21	2.0	21	95	0	77	44	6	13	34	1.72
41091994--41092041	21	2.3	21	88	0	69	43	6	10	39	1.64
41093814--41094002	48	4.0	47	86	8	237	26	13	28	31	1.94
41093910--41094034	42	3.0	42	90	2	180	30	12	26	30	1.93
41094809--41094843	13	2.7	13	100	0	70	31	22	40	5	1.78
41103576--41103757	27	6.7	27	88	5	253	34	14	15	35	1.88
41103736--41103810	27	2.8	27	89	4	107	38	17	18	25	1.92
41107364--41107548	27	6.9	27	95	0	334	34	14	17	34	1.89
41107551--41107628	27	2.9	27	79	7	88	42	21	15	20	1.89
41110488--41110689	27	7.5	27	80	5	167	30	26	13	29	1.94
41110527--41110675	81	1.8	81	82	5	194	28	26	13	30	1.94
41110484--41110689	81	2.6	81	78	3	193	30	27	13	29	1.94
41114613--41114742	40	3.3	40	89	1	190	27	28	20	23	1.99
41114616--41114793	40	4.5	40	81	6	130	26	28	20	24	1.99
41122472--41122653	40	4.6	40	84	5	183	26	27	20	25	1.99
41124881--41124923	21	2.0	21	86	0	59	32	0	25	41	1.56
41125433--41125499	23	2.8	24	76	13	66	20	28	19	31	1.97
41125562--41125633	25	2.9	25	78	0	81	26	26	18	29	1.98
41136467--41136633	49	3.4	49	78	8	164	24	28	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41146983--41147046	32	2.0	32	100	0	128	50	15	15	18	1.79
41152009--41152043	18	1.9	18	88	11	54	28	22	17	31	1.96
41154595--41154627	13	2.6	13	90	4	50	39	0	12	48	1.40
41161144--41161226	24	3.4	24	86	6	105	15	30	18	36	1.92
41161280--41161333	26	2.1	25	86	10	74	16	24	18	40	1.90
41161352--41161417	24	2.7	24	83	2	69	18	25	19	36	1.94
41173888--41173926	18	2.2	17	95	4	69	33	0	0	66	0.92
41173896--41173927	12	2.8	12	95	4	57	31	0	0	68	0.90
41175081--41175348	40	6.7	40	85	1	322	20	25	18	35	1.95
41175183--41175282	20	5.0	20	66	9	78	16	27	20	37	1.93
41178263--41178411	72	2.1	72	89	1	228	24	8	17	50	1.73
41180107--41180175	36	1.9	36	90	0	111	44	4	18	31	1.69
41184815--41184950	40	3.4	40	79	3	148	22	27	15	34	1.94
41190215--41190453	50	4.8	49	79	6	230	25	17	26	30	1.98
41197390--41197615	50	4.5	50	78	8	217	24	17	27	30	1.97
41203202--41203404	40	5.1	40	82	2	221	22	24	28	25	1.99
41203197--41203404	80	2.6	80	89	3	294	23	23	27	25	2.00
41211248--41211436	40	4.8	40	80	8	208	22	23	28	24	1.99
41211242--41211448	79	2.6	80	87	4	294	23	23	27	25	2.00
41213863--41214038	46	3.8	46	77	14	182	21	19	28	30	1.98
41213860--41214031	93	1.8	93	91	2	283	22	20	28	29	1.98
41221806--41221865	30	2.1	28	90	6	93	26	18	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41227779--41228236	228	2.0	228	98	0	891	25	22	22	30	1.99
41228984--41229029	16	2.9	15	81	9	56	15	4	2	78	1.01
41229001--41229068	5	12.8	5	74	20	50	17	4	1	76	1.03
41228997--41229068	12	6.2	11	76	12	65	18	4	1	76	1.02
41228997--41229048	6	9.0	6	85	4	63	15	3	1	78	0.98
41231866--41231890	13	1.9	13	100	0	50	44	0	8	48	1.32
41235855--41235919	6	10.5	6	79	12	51	73	0	6	20	1.03
41235873--41235910	10	3.5	11	86	13	53	76	0	0	23	0.79
41241349--41241519	93	1.8	93	94	0	306	28	28	21	21	1.99
41241344--41241516	46	3.7	46	80	10	217	28	27	21	21	1.99
41241939--41241998	30	2.0	30	90	0	93	30	25	8	36	1.85
41248928--41249098	93	1.8	93	91	2	281	28	28	21	22	1.99
41248923--41249091	46	3.7	46	78	12	184	29	27	20	23	1.98
41248925--41249114	46	4.1	45	73	16	147	28	27	20	22	1.99
41249517--41249576	30	2.0	30	90	0	93	30	25	8	36	1.85
41256418--41256589	46	3.7	46	78	11	199	29	26	21	22	1.99
41257002--41257057	28	2.0	28	92	0	94	30	25	5	39	1.78
41267890--41267939	23	2.1	24	96	3	93	34	8	8	50	1.61
41269416--41269475	9	6.7	9	78	0	57	28	33	11	26	1.91
41269408--41269466	27	2.2	27	87	0	82	33	28	11	25	1.91
41269433--41269477	18	2.5	18	81	0	63	31	33	11	24	1.90
41269416--41269475	27	2.2	27	90	0	93	28	33	11	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41272666--41272843	27	6.6	27	83	3	196	26	15	28	29	1.96
41272667--41272817	82	1.9	81	88	4	232	27	16	27	28	1.97
41280724--41280901	27	6.6	27	83	3	196	26	15	28	29	1.96
41280725--41280875	82	1.9	81	88	4	232	27	16	27	28	1.97
41284342--41284383	21	2.0	21	90	0	66	30	26	16	26	1.97
41286784--41287056	148	1.8	148	83	6	365	35	10	17	36	1.84
41288056--41288133	40	2.0	40	86	0	111	34	12	21	30	1.91
41288054--41288152	40	2.4	41	79	5	110	30	14	23	32	1.94
41292589--41292646	30	1.9	30	89	0	89	34	12	25	27	1.91
41292989--41293345	94	3.9	90	74	12	248	28	19	29	23	1.98
41292989--41293291	47	6.6	46	71	15	193	28	18	28	24	1.98
41301194--41301288	28	3.4	28	77	11	104	26	30	14	28	1.95
41301205--41301291	28	3.1	29	83	3	124	27	27	14	29	1.96
41301374--41301399	9	2.9	9	100	0	52	19	34	11	34	1.88
41304965--41305060	48	2.0	48	95	4	176	45	12	7	34	1.70
41305430--41305489	25	2.4	25	78	13	70	31	20	25	23	1.98
41309750--41309822	37	2.0	37	94	0	128	36	20	21	20	1.95
41313545--41313586	14	3.1	13	89	3	57	19	9	2	69	1.28
41321648--41321726	37	2.1	37	86	4	106	25	29	18	26	1.98
41321845--41322333	47	10.4	47	94	0	825	29	29	8	32	1.87
41325883--41326065	40	4.6	40	80	6	194	24	26	22	26	2.00
41326369--41326447	29	2.7	29	82	5	97	27	31	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41326429--41326531	43	2.4	43	96	0	197	27	35	14	22	1.93
41328392--41328469	36	2.1	37	86	6	106	25	32	17	24	1.97
41328587--41329167	47	12.4	47	95	0	982	29	30	8	31	1.87
41338039--41338067	11	2.6	11	100	0	58	31	10	17	41	1.83
41340924--41341134	46	4.6	44	76	16	169	26	18	30	25	1.98
41349487--41349590	27	3.8	27	82	12	115	35	24	24	16	1.95
41349486--41349590	54	1.9	54	83	7	133	36	23	23	16	1.94
41368549--41368579	13	2.4	13	94	0	53	32	32	25	9	1.88
41370060--41370183	43	2.9	42	81	7	160	29	24	15	31	1.95
41382575--41382695	43	2.8	43	80	9	131	31	24	19	24	1.98
41390598--41390826	49	4.7	49	85	5	284	26	18	26	29	1.98
41393845--41393909	15	4.4	15	74	16	55	9	13	13	63	1.53
41395108--41395249	44	3.3	42	79	8	144	31	23	18	26	1.97
41397797--41397868	26	2.8	26	93	0	117	27	25	20	26	1.99
41403557--41403654	30	3.2	30	76	16	87	58	17	14	10	1.63
41403576--41403653	15	5.2	15	73	14	63	56	16	15	11	1.67
41421929--41422078	40	3.8	39	88	4	203	23	28	24	24	1.99
41428346--41428413	34	2.0	34	100	0	136	38	14	11	35	1.83
41428620--41428843	40	5.6	40	87	1	290	28	25	21	24	1.99
41432858--41433152	47	6.2	47	88	2	410	31	8	30	29	1.87
41432861--41433137	96	2.9	96	92	1	441	31	8	31	28	1.87
41436390--41436495	53	2.0	53	90	0	167	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41437305--41437329	13	1.9	13	100	0	50	16	4	16	64	1.44
41437991--41438321	48	6.9	48	69	13	200	29	20	27	22	1.98
41437947--41438125	94	1.9	94	86	2	252	27	20	28	22	1.99
41437998--41438319	94	3.4	96	76	14	274	29	20	27	22	1.98
41439433--41439473	22	1.9	21	85	5	55	12	36	26	24	1.91
41449226--41449256	16	1.9	16	93	0	53	35	22	0	41	1.54
41449512--41449644	53	2.5	53	83	4	178	22	24	19	33	1.97
41449453--41449707	55	4.8	54	76	11	217	22	25	16	36	1.94
41454170--41454284	29	4.0	29	84	6	137	28	29	14	26	1.95
41454161--41454271	58	1.9	58	87	1	161	27	29	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320