genome.fa.s12.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  114  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37007926--37008186	80	3.3	80	84	2	303	25	21	27	26	1.99
37011152--37011206	22	2.5	22	87	0	74	34	29	23	12	1.92
37011456--37011511	28	2.0	28	85	0	76	30	12	19	37	1.89
37011735--37011772	19	2.0	19	85	10	51	21	44	23	10	1.83
37014680--37014733	28	1.9	28	88	0	81	25	12	24	37	1.91
37019299--37019370	33	2.2	33	100	0	144	41	5	19	33	1.75
37028345--37028540	27	7.3	26	72	10	103	37	21	10	31	1.87
37028345--37028510	54	3.1	54	77	0	161	37	22	10	30	1.87
37028347--37028538	81	2.4	81	77	14	191	36	21	10	31	1.87
37028490--37028551	27	2.3	27	86	5	81	41	16	11	30	1.83
37032813--37032866	27	2.0	27	96	0	99	27	9	22	40	1.84
37033186--37033236	18	2.8	18	72	16	52	25	37	17	19	1.94
37037004--37037078	34	2.2	35	86	9	111	28	25	20	26	1.99
37039863--37039941	38	2.1	38	100	0	158	45	16	7	30	1.75
37039934--37039997	20	3.2	20	63	20	53	45	12	1	40	1.51
37039924--37040002	39	2.0	40	97	2	151	48	12	2	36	1.55
37043299--37043476	27	6.6	27	81	5	180	28	28	16	26	1.97
37043320--37043475	82	1.9	81	86	3	224	28	28	16	26	1.97
37070110--37070221	43	2.6	43	97	0	206	29	32	26	11	1.92
37070225--37070299	38	1.9	40	86	5	109	24	28	25	22	2.00
37073769--37073952	67	2.8	64	79	7	210	29	16	30	23	1.96
37082406--37082558	42	3.6	42	74	6	139	30	17	23	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37083633--37083754	50	2.4	51	77	2	129	42	14	5	36	1.70
37088760--37088885	51	2.5	51	82	0	171	42	13	5	38	1.68
37093171--37093223	26	2.0	26	100	0	106	37	15	11	35	1.83
37094051--37094121	23	3.1	23	79	4	72	23	21	16	38	1.93
37094011--37094121	46	2.4	46	79	10	109	22	20	18	37	1.94
37095507--37095540	16	2.1	17	88	5	52	32	0	23	44	1.54
37102299--37102355	30	1.9	29	89	3	87	10	15	17	56	1.67
37108782--37108846	23	2.8	23	90	4	96	16	27	20	35	1.94
37108783--37108861	23	3.4	24	82	6	92	18	24	17	39	1.92
37109125--37109202	38	2.1	38	100	0	156	38	5	17	38	1.72
37112330--37112723	47	8.4	47	91	1	628	32	8	31	27	1.87
37114678--37114783	55	1.9	55	84	3	142	27	22	22	27	1.99
37118871--37118904	17	2.0	17	94	0	59	32	23	14	29	1.94
37125037--37125167	59	2.2	60	91	2	219	26	12	11	49	1.74
37148388--37148507	28	4.3	28	88	0	168	21	15	35	28	1.93
37148824--37149245	27	15.7	27	80	6	430	38	21	9	30	1.85
37148824--37149271	81	5.6	80	82	4	483	38	21	9	30	1.86
37149197--37149287	27	3.4	27	90	0	128	37	16	17	28	1.92
37164389--37164758	46	7.8	48	74	13	259	28	17	29	25	1.97
37164352--37164560	46	4.5	46	80	7	210	28	19	28	23	1.98
37166089--37166303	46	4.6	45	75	13	161	29	20	29	20	1.98
37166095--37166356	140	1.9	141	82	7	336	29	18	30	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171641--37171673	13	2.5	13	95	0	57	15	18	39	27	1.90
37182080--37182171	42	2.2	42	90	0	139	34	21	13	30	1.91
37182304--37182465	26	6.3	26	85	2	215	28	22	20	27	1.99
37182515--37182601	20	4.3	20	89	2	131	32	18	9	40	1.82
37183309--37183372	27	2.4	27	81	5	76	21	25	17	35	1.95
37183406--37183536	54	2.4	54	83	2	147	32	9	19	39	1.83
37183411--37183556	27	5.4	26	69	11	89	31	8	18	41	1.81
37183588--37183679	27	3.4	27	87	0	139	44	8	19	27	1.80
37183604--37183879	27	10.1	27	76	7	128	35	7	22	35	1.82
37183657--37183787	28	4.8	28	76	11	110	30	7	22	38	1.82
37183768--37183870	54	1.9	54	85	0	143	36	5	25	32	1.80
37191951--37192050	48	2.0	49	88	3	148	28	23	21	28	1.99
37196637--37196821	40	4.6	40	84	9	243	24	28	22	23	1.99
37196637--37196821	83	2.3	80	89	3	282	24	28	22	23	1.99
37198386--37198563	27	6.6	27	81	3	169	29	28	15	26	1.96
37198407--37198562	82	1.9	81	85	3	215	28	28	15	26	1.96
37202818--37203038	40	5.6	40	86	4	270	23	20	27	27	1.99
37211750--37211807	27	2.1	27	81	6	64	29	13	24	32	1.94
37214872--37214906	16	2.1	16	89	5	52	37	0	34	28	1.58
37225432--37225462	16	1.9	16	93	0	53	35	22	0	41	1.54
37225429--37225468	20	2.0	20	85	0	53	37	22	0	40	1.54
37226340--37226566	41	5.5	41	87	4	314	20	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37226336--37226566	84	2.8	84	88	5	326	21	19	23	36	1.95
37226340--37226566	125	1.8	124	89	4	359	20	19	23	36	1.95
37227720--37227798	6	13.0	6	74	12	72	50	13	17	17	1.78
37227734--37227828	37	2.6	37	89	0	136	46	14	18	20	1.84
37227783--37227840	25	2.3	25	82	5	73	43	17	18	20	1.89
37227969--37228020	27	2.0	26	84	3	68	34	21	26	17	1.95
37228661--37228777	27	4.3	27	92	0	189	24	20	19	35	1.96
37228683--37228803	54	2.2	54	86	5	156	29	16	18	35	1.93
37228781--37228893	27	4.2	27	81	8	115	30	7	18	43	1.77
37235441--37235741	41	7.3	41	88	5	439	19	19	24	36	1.95
37235441--37235742	81	3.7	82	87	5	432	20	19	24	36	1.95
37235441--37235741	122	2.4	125	87	4	443	19	19	24	36	1.95
37248056--37248233	27	6.6	27	83	3	205	26	15	28	29	1.96
37248057--37248212	82	1.9	81	88	3	233	26	15	28	29	1.96
37248053--37248233	82	2.2	81	83	2	229	27	15	27	29	1.96
37256137--37256314	27	6.6	27	83	3	205	26	15	28	29	1.96
37256138--37256293	82	1.9	81	88	3	233	26	15	28	29	1.96
37256134--37256314	82	2.2	81	83	2	229	27	15	27	29	1.96
37259615--37259671	30	1.9	30	88	0	87	40	8	22	28	1.84
37261629--37261741	43	2.6	43	84	2	129	30	15	23	30	1.95
37264667--37264801	23	5.8	22	70	14	76	22	11	32	33	1.90
37279307--37279384	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37287004--37287169	39	4.2	40	89	3	221	25	28	21	24	1.99
37287004--37287222	78	2.8	79	84	3	253	25	28	21	25	1.99
37287154--37287231	40	1.9	41	82	10	97	26	28	21	23	1.99
37299335--37299559	40	5.7	40	84	4	231	24	20	27	26	1.99
37299410--37299592	79	2.3	79	81	1	215	26	20	27	25	1.99
37303854--37303979	47	2.7	45	81	11	148	23	30	18	27	1.98
37307082--37307301	40	5.6	40	83	5	279	25	29	22	22	1.99
37318243--37318419	47	3.8	48	76	9	170	23	30	18	27	1.97
37318335--37318461	48	2.8	43	75	17	114	24	29	17	28	1.97
37318287--37318461	94	1.9	94	86	2	253	24	30	17	27	1.97
37321701--37321878	27	6.6	27	83	3	178	30	28	14	26	1.95
37321722--37321877	82	1.9	81	88	3	233	29	28	15	26	1.96
37330278--37330320	21	2.1	21	83	12	54	32	2	20	44	1.65
37333962--37333992	16	1.9	16	93	0	53	41	0	22	35	1.54
37344443--37344644	107	1.9	107	97	0	386	25	6	25	42	1.80
37355508--37355565	30	1.9	30	100	0	116	32	6	12	48	1.67
37362477--37362622	40	3.7	40	90	3	206	26	28	22	23	1.99
37369366--37369543	27	6.6	27	84	3	205	29	28	15	26	1.96
37369387--37369542	82	1.9	81	88	3	233	29	28	15	26	1.96
37370025--37370051	12	2.2	12	100	0	54	40	0	7	51	1.30
37373608--37373793	40	4.7	40	89	4	261	27	27	20	24	1.99
37378451--37378592	6	22.8	6	67	17	67	49	12	16	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37378451--37378592	31	4.5	31	87	0	176	49	12	16	21	1.79
37378451--37378592	62	2.3	62	87	1	194	49	12	16	21	1.79
37378729--37378823	27	3.5	26	84	5	109	37	20	22	20	1.94
37378989--37379053	22	3.0	22	80	8	78	33	23	23	20	1.97
37379480--37379889	27	15.3	27	87	0	518	23	21	20	34	1.97
37379508--37379943	54	8.1	54	85	1	518	23	19	20	36	1.95
37379872--37380024	53	2.9	53	85	8	204	29	9	20	40	1.84
37379871--37380024	27	5.8	26	81	7	175	29	10	20	40	1.85
37380015--37380146	27	4.9	27	91	0	201	40	6	22	30	1.80
37379990--37380146	54	2.9	54	87	0	197	38	7	22	31	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320