genome.fa.s12.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  132  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43270436--43270618	66	2.9	63	77	6	188	29	17	30	22	1.97
43275013--43275046	16	2.0	18	88	11	54	11	29	38	20	1.88
43277111--43277195	40	2.2	40	84	2	109	28	31	22	17	1.97
43277266--43277374	47	2.3	47	86	7	143	26	29	10	33	1.89
43277826--43277865	16	2.5	16	91	0	62	30	0	37	32	1.58
43281666--43281756	45	2.0	45	85	2	121	37	28	6	27	1.82
43281737--43281805	16	4.2	16	96	3	129	37	37	0	24	1.56
43281737--43281805	33	2.1	32	97	2	129	37	37	0	24	1.56
43281955--43281989	18	2.0	17	88	5	52	54	0	0	45	0.99
43282089--43282130	15	2.7	16	82	14	52	52	2	0	45	1.13
43281842--43282155	154	2.0	156	95	1	569	44	3	5	46	1.41
43282098--43282139	15	2.9	15	82	10	52	52	0	0	47	1.00
43282092--43282314	120	1.9	120	96	1	412	49	6	2	41	1.40
43282208--43282259	15	3.6	15	80	12	56	53	1	0	44	1.11
43282185--43282275	44	2.1	43	81	6	103	53	3	2	40	1.29
43282127--43282310	59	3.1	59	65	21	148	49	7	2	41	1.42
43282304--43282350	17	2.9	16	78	18	53	46	2	6	44	1.40
43282323--43282356	17	2.0	17	94	0	59	50	0	5	44	1.26
43282389--43282583	93	2.1	92	88	4	286	47	4	4	44	1.41
43284991--43285018	12	2.3	12	100	0	56	35	25	25	14	1.93
43290002--43290042	20	2.0	20	85	9	55	46	17	7	29	1.74
43291269--43291533	40	6.9	40	84	9	372	27	29	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43291306--43291365	29	2.1	29	90	0	93	30	30	16	23	1.96
43294233--43294342	47	2.4	47	81	6	127	27	27	9	36	1.87
43308273--43308310	19	2.0	19	100	0	76	26	36	21	15	1.93
43309602--43309639	20	1.9	20	100	0	76	47	2	21	28	1.64
43313694--43313745	27	2.0	26	84	3	68	34	21	26	17	1.95
43314378--43314438	27	2.3	27	85	0	77	21	24	22	31	1.98
43314404--43314542	27	5.1	27	87	3	199	25	20	17	35	1.94
43321171--43321257	27	3.1	27	74	12	86	34	20	22	21	1.97
43321198--43321337	67	2.1	67	83	2	172	30	22	26	20	1.98
43321574--43321602	8	3.6	8	100	0	58	10	41	27	20	1.85
43321960--43322028	27	2.6	27	78	0	66	26	23	21	28	1.99
43321986--43322124	27	5.1	27	89	0	197	26	20	16	36	1.93
43324618--43324642	6	4.2	6	100	0	50	20	16	16	48	1.82
43326921--43326960	20	2.0	20	100	0	80	45	0	20	35	1.51
43327208--43327363	85	1.8	85	83	5	208	25	19	26	28	1.99
43327256--43327366	43	2.6	42	76	9	109	25	19	26	28	1.99
43329027--43329221	49	3.9	49	85	5	275	27	19	25	27	1.99
43329029--43329216	100	1.9	100	96	0	349	27	20	24	28	1.99
43336365--43336425	30	2.0	30	83	0	77	31	22	8	37	1.84
43341384--43341504	55	2.2	54	80	4	134	29	28	23	18	1.98
43347551--43347592	20	2.1	20	86	0	57	26	9	9	54	1.63
43353610--43353834	40	5.6	40	81	7	242	25	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43353610--43353870	80	3.3	80	82	4	278	26	23	26	24	2.00
43353610--43353834	120	1.9	121	83	4	294	25	23	27	24	2.00
43358712--43358883	93	1.8	93	91	0	281	28	29	20	21	1.98
43358705--43358880	46	3.8	46	76	12	180	29	28	20	21	1.98
43362662--43362837	49	3.5	49	78	9	185	25	15	26	32	1.96
43365968--43366019	27	2.0	26	85	11	70	38	19	11	30	1.87
43369321--43369501	49	3.7	50	77	7	183	26	18	25	29	1.98
43369328--43369514	100	1.9	100	87	2	277	26	18	25	29	1.98
43376455--43376483	13	2.2	13	100	0	58	55	13	0	31	1.39
43389753--43389807	25	2.2	25	83	6	67	21	29	34	14	1.93
43392020--43392168	42	3.5	42	79	7	131	33	26	17	22	1.96
43394019--43394173	23	6.8	23	70	5	100	19	18	18	44	1.87
43394019--43394174	68	2.3	68	80	2	161	19	17	17	44	1.87
43394000--43394179	45	4.0	45	74	11	127	18	18	18	43	1.88
43398799--43398851	27	2.0	27	88	0	79	30	18	16	33	1.94
43402191--43402222	6	5.3	6	92	0	55	15	12	34	37	1.85
43404803--43404973	92	1.8	93	94	1	308	28	29	21	21	1.98
43404796--43404970	46	3.8	46	78	14	207	29	29	21	20	1.98
43412037--43412208	93	1.8	93	94	0	308	27	29	21	21	1.99
43412030--43412205	46	3.8	46	79	12	207	28	29	21	21	1.98
43418355--43418397	20	2.2	20	95	0	77	41	25	4	27	1.75
43419397--43419561	56	2.9	56	85	1	215	32	23	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43419889--43419918	15	2.0	15	93	0	51	56	6	0	36	1.26
43429228--43429337	56	2.0	56	92	0	184	33	24	13	28	1.93
43435645--43435701	23	2.5	22	78	18	71	50	12	7	29	1.66
43444170--43444384	48	4.5	47	77	9	204	26	26	19	27	1.99
43454727--43454972	49	4.9	50	81	2	271	26	17	26	30	1.97
43454730--43454971	100	2.4	98	82	2	286	25	17	26	30	1.97
43454727--43455005	150	1.9	150	86	3	400	26	17	26	30	1.97
43458580--43458729	55	2.8	54	80	4	149	26	15	29	28	1.96
43458552--43458729	27	6.6	27	77	6	146	25	15	28	30	1.96
43458553--43458708	82	1.9	81	81	6	190	25	16	28	30	1.96
43463214--43463390	47	3.6	48	77	8	180	24	32	17	25	1.97
43463212--43463484	46	5.8	46	73	12	157	26	32	16	24	1.96
43465869--43466043	40	4.4	40	88	0	260	23	20	28	28	1.99
43465869--43466067	80	2.5	80	85	1	202	24	21	26	27	1.99
43481675--43481715	13	3.2	13	82	0	55	17	31	29	21	1.96
43496330--43496457	46	2.8	46	90	0	193	20	21	28	28	1.98
43499033--43499337	40	7.6	39	75	6	236	30	14	31	23	1.94
43499053--43499323	80	3.4	80	87	1	391	30	12	31	24	1.93
43499059--43499324	120	2.2	120	77	9	272	30	13	31	23	1.93
43504096--43504273	27	6.6	27	83	3	205	26	15	28	29	1.96
43504097--43504252	82	1.9	81	88	3	233	26	15	28	29	1.96
43504093--43504273	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43509939--43510106	40	4.2	40	83	4	106	25	27	23	23	2.00
43509962--43510106	40	3.6	40	85	4	193	23	26	24	25	2.00
43517920--43518086	40	4.2	40	80	5	106	25	27	23	23	2.00
43517943--43518086	40	3.6	39	85	5	182	23	26	24	25	2.00
43525109--43525276	40	4.2	40	83	4	106	25	27	23	23	2.00
43525132--43525276	40	3.6	40	85	4	193	23	26	24	25	2.00
43539631--43539683	28	1.9	28	84	3	72	30	18	26	24	1.98
43542057--43542101	18	2.4	18	85	3	54	46	4	2	46	1.35
43542071--43542110	18	2.2	18	95	0	71	40	7	0	52	1.30
43544840--43544867	6	4.7	6	100	0	56	17	50	0	32	1.47
43545110--43545180	16	4.4	16	83	3	81	42	7	22	28	1.79
43545328--43545377	26	2.0	26	88	4	75	42	0	4	54	1.19
43545353--43545478	57	2.1	58	81	10	139	50	3	0	44	1.26
43545441--43545503	12	5.4	12	73	21	55	49	3	0	47	1.17
43556726--43556970	49	4.9	49	80	2	265	25	18	27	28	1.98
43556729--43556954	101	2.3	99	85	3	285	25	18	27	28	1.98
43572684--43572733	19	2.8	18	77	19	59	40	48	2	10	1.48
43574784--43574848	24	2.7	25	73	20	66	33	7	4	53	1.50
43582724--43582749	12	2.2	12	100	0	52	50	7	0	42	1.31
43583231--43583407	27	6.5	27	83	3	203	27	15	27	29	1.96
43583232--43583387	82	1.9	81	88	3	233	26	15	28	29	1.96
43583228--43583407	82	2.2	81	83	3	227	27	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43591329--43591506	27	6.6	27	81	3	187	26	15	27	30	1.96
43591330--43591485	82	1.9	81	85	3	215	26	16	27	30	1.96
43591326--43591506	82	2.2	81	81	2	211	26	16	27	30	1.96
43595970--43596183	107	2.0	107	98	0	410	33	22	18	25	1.97
43598350--43598824	74	6.2	74	74	13	399	30	15	19	34	1.93
43598594--43598810	72	2.9	76	84	8	232	34	16	19	29	1.94
43598435--43598810	153	2.4	153	78	5	391	31	15	19	32	1.94
43598666--43599081	86	4.8	87	80	11	430	29	18	18	34	1.95
43598977--43599006	13	2.3	13	94	0	51	16	10	6	66	1.41
43598666--43599081	172	2.4	172	86	3	581	29	18	18	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320