genome.fa.s12.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  142  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46544703--46544953	96	2.6	96	93	1	416	28	30	8	32	1.87
46544703--46544974	143	1.9	141	90	3	429	28	30	8	31	1.87
46548629--46548878	40	6.2	40	91	1	360	26	28	22	23	1.99
46549186--46549262	29	2.6	29	85	6	102	27	32	15	24	1.95
46551126--46551204	37	2.1	37	88	4	115	25	30	18	25	1.98
46551323--46551594	47	5.7	47	90	2	384	28	29	9	33	1.88
46551323--46551573	96	2.6	96	91	1	380	28	29	9	33	1.88
46551323--46551594	143	1.9	141	87	3	393	28	29	9	33	1.88
46555588--46555612	8	3.1	8	100	0	50	24	0	40	36	1.55
46556583--46556640	25	2.4	26	83	13	79	81	1	6	10	0.95
46556583--46556626	18	2.4	18	85	7	54	79	2	6	11	1.01
46561519--46561551	13	2.6	13	90	4	50	48	12	0	39	1.40
46565953--46566008	20	2.8	21	89	8	89	23	32	35	8	1.86
46567283--46567496	94	2.3	94	79	0	212	26	26	19	28	1.99
46570979--46571151	46	3.7	46	77	11	183	21	20	27	30	1.98
46570976--46571146	93	1.8	93	89	2	272	21	20	28	29	1.98
46584030--46584111	25	3.3	25	78	10	87	23	21	21	32	1.98
46593833--46593992	44	3.7	43	72	14	132	24	14	26	35	1.94
46593833--46594002	42	4.0	43	72	15	145	24	14	26	35	1.93
46595287--46595364	39	2.0	39	100	0	156	25	25	15	33	1.95
46600395--46600419	13	1.9	13	100	0	50	32	0	20	48	1.50
46602707--46602745	19	2.0	20	90	5	62	41	15	7	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46603317--46603356	19	2.0	20	85	4	55	57	17	2	22	1.52
46620005--46620041	18	2.1	18	94	0	65	35	27	18	18	1.95
46620053--46620170	47	2.5	47	95	0	209	35	14	23	26	1.93
46620149--46620345	54	3.6	54	82	4	236	37	17	23	21	1.94
46620149--46620345	55	3.6	54	84	4	245	37	17	23	21	1.94
46622141--46622307	40	4.2	40	80	9	189	24	24	28	22	2.00
46630169--46630266	39	2.5	40	83	3	126	22	25	30	21	1.99
46630169--46630306	40	3.5	39	79	5	127	23	25	28	22	1.99
46634293--46634390	39	2.5	40	83	3	126	22	25	30	21	1.99
46634293--46634430	40	3.5	39	79	5	127	23	25	28	22	1.99
46638650--46638833	40	4.6	40	84	2	244	25	23	26	25	2.00
46639096--46639139	22	2.0	22	82	8	54	31	11	13	43	1.80
46641428--46641489	26	2.4	26	97	0	115	53	24	0	22	1.46
46642313--46642553	45	5.4	45	85	5	303	20	16	14	49	1.79
46644975--46645011	18	2.0	19	89	5	58	29	13	8	48	1.71
46666761--46666799	20	2.0	20	94	0	69	28	20	30	20	1.98
46671247--46671298	20	2.6	20	84	0	77	11	32	36	19	1.87
46676896--46676929	15	2.3	15	89	0	50	73	2	2	20	1.09
46678171--46678627	133	3.4	133	77	6	361	34	17	20	27	1.95
46678437--46678682	132	1.9	132	86	1	350	33	16	19	30	1.94
46681566--46682240	44	15.3	44	88	0	848	24	30	15	28	1.96
46686487--46686617	27	4.9	27	80	11	153	18	25	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46686484--46686617	54	2.5	54	91	1	216	17	26	21	34	1.96
46687931--46687987	22	2.6	22	91	0	87	14	29	28	28	1.95
46689546--46689584	20	1.9	21	89	5	62	43	0	12	43	1.42
46691051--46691450	75	5.3	75	87	1	536	28	18	20	32	1.96
46691092--46691370	35	7.5	35	68	17	161	28	16	20	34	1.95
46693064--46693239	27	6.5	27	83	3	183	30	27	14	27	1.95
46701197--46701372	27	6.5	27	85	3	210	30	27	14	27	1.95
46701216--46701371	82	1.9	81	89	3	242	30	28	14	26	1.95
46708748--46708866	27	4.4	27	90	3	159	34	20	19	26	1.96
46709498--46709637	67	2.1	68	87	2	201	18	28	23	29	1.98
46716244--46716362	27	4.4	27	90	0	148	36	19	19	25	1.95
46717009--46717092	27	3.1	27	84	6	107	20	26	20	33	1.97
46719163--46719563	75	5.3	75	88	0	577	28	16	21	33	1.95
46724871--46725085	48	4.6	48	74	11	194	27	19	23	29	1.98
46729249--46729329	26	3.2	26	64	30	66	24	17	29	28	1.97
46729143--46729384	50	4.9	49	76	5	207	26	19	25	29	1.98
46736597--46736822	50	4.5	50	76	9	192	24	17	26	30	1.97
46741449--46741492	22	2.0	22	82	8	54	38	13	18	29	1.89
46741735--46741900	40	4.1	41	89	4	250	29	24	23	22	1.99
46744516--46744627	27	4.2	26	80	7	125	35	23	25	15	1.94
46744516--46744627	54	2.1	54	84	3	145	35	23	25	15	1.94
46746513--46746815	40	7.6	40	88	2	378	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46766449--46766506	28	2.1	28	96	0	107	27	25	15	31	1.96
46775386--46775467	43	1.9	43	89	0	128	13	24	34	28	1.93
46777854--46777889	18	2.1	17	94	5	63	55	8	19	16	1.66
46781269--46781498	40	5.8	40	86	4	270	24	28	22	24	2.00
46789348--46789513	39	4.2	40	80	10	189	22	28	24	24	1.99
46796368--46796550	40	4.6	40	82	4	235	25	26	22	25	2.00
46796368--46796550	79	2.3	80	85	4	237	25	26	22	25	2.00
46798973--46799036	33	2.0	32	96	3	119	34	14	18	32	1.91
46816532--46816599	29	2.3	29	82	5	84	27	29	13	29	1.94
46816705--46816772	29	2.3	29	85	5	93	27	30	13	27	1.94
46816877--46816944	29	2.3	29	85	5	93	27	30	13	27	1.94
46817051--46817118	29	2.3	29	85	5	93	27	30	13	27	1.94
46817220--46817298	29	2.7	30	82	13	110	29	30	15	25	1.96
46816421--46817267	174	4.9	174	97	0	1565	31	25	14	29	1.94
46824010--46824077	29	2.3	29	82	5	84	27	29	13	29	1.94
46823899--46824921	174	5.9	174	97	0	1904	31	24	14	29	1.95
46824184--46824251	29	2.3	29	85	5	93	27	30	13	27	1.94
46824359--46824425	29	2.3	29	82	5	82	26	29	14	28	1.96
46824532--46824599	29	2.3	29	85	5	93	27	29	14	27	1.95
46824706--46824773	29	2.3	29	85	5	93	27	30	13	27	1.94
46824874--46824952	29	2.7	30	82	13	110	29	30	15	25	1.96
46829920--46829974	6	9.2	6	86	7	76	80	0	3	16	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46829900--46829974	18	4.2	17	78	13	71	77	0	4	18	0.92
46831334--46831368	13	2.8	13	95	4	63	48	20	0	31	1.50
46837224--46837248	11	2.3	11	100	0	50	60	8	0	32	1.26
46837281--46837321	6	6.7	6	83	5	55	75	0	4	19	0.98
46839710--46839834	48	2.6	48	94	0	223	25	24	24	24	2.00
46839884--46839975	48	1.9	48	86	4	132	32	26	17	23	1.97
46842109--46842151	21	2.0	21	86	0	59	37	11	0	51	1.39
46850350--46850390	20	2.0	20	95	0	73	41	31	14	12	1.83
46850328--46850533	98	2.1	98	93	0	358	33	29	19	17	1.95
46850539--46850605	27	2.5	27	81	11	84	38	16	19	25	1.92
46851761--46851801	20	2.0	20	95	0	73	41	31	14	12	1.83
46851747--46851940	98	2.0	98	93	0	334	34	29	18	17	1.94
46851950--46852028	27	3.0	26	83	5	86	37	18	21	21	1.94
46852202--46852531	27	12.2	27	86	0	426	25	18	17	38	1.93
46852515--46852774	27	9.7	27	79	8	246	30	9	20	40	1.84
46852202--46852641	81	5.4	80	82	5	336	27	16	17	38	1.91
46852517--46852774	80	3.2	79	86	5	322	29	9	19	40	1.84
46855243--46855460	79	2.7	79	80	12	248	25	25	21	27	1.99
46855243--46855467	119	1.9	120	82	11	284	24	26	22	26	2.00
46855243--46855467	40	5.7	39	83	8	235	24	26	22	26	2.00
46858092--46858172	27	3.0	27	82	8	94	37	22	22	18	1.95
46858202--46858432	98	2.4	98	88	1	338	34	25	19	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46858483--46858565	27	3.1	26	83	8	96	36	20	22	20	1.95
46858736--46859063	27	12.2	27	83	0	334	27	19	16	37	1.92
46858736--46859063	54	6.1	55	84	4	375	27	19	16	37	1.92
46858734--46859090	81	4.4	81	86	1	475	27	18	16	37	1.92
46858763--46859144	54	7.1	52	82	4	248	28	17	17	37	1.91
46858734--46859173	81	5.5	79	80	8	318	27	17	17	37	1.91
46859047--46859226	27	6.7	27	81	9	208	30	9	20	40	1.84
46859047--46859226	53	3.4	54	84	5	224	30	9	20	40	1.84
46860923--46860964	22	2.0	22	85	4	59	19	26	38	16	1.92
46862841--46862885	20	2.2	20	84	0	54	37	13	2	46	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320