genome.fa.s12.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  144  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47141627--47141814	40	4.7	40	93	0	304	30	20	26	21	1.98
47155749--47155894	37	3.9	37	92	1	213	26	32	18	22	1.97
47155752--47155894	74	1.9	74	92	0	241	24	33	18	23	1.97
47156099--47156386	47	6.1	47	88	0	414	26	29	12	32	1.92
47156192--47156268	22	3.4	22	68	16	66	25	27	14	32	1.94
47156099--47156365	141	1.9	141	96	0	489	25	28	13	32	1.93
47162525--47162572	25	1.9	25	86	0	69	33	25	16	25	1.96
47162611--47162667	9	5.9	9	73	15	51	35	8	21	35	1.84
47162609--47162671	20	3.2	20	95	0	117	36	12	19	31	1.89
47162725--47162868	24	6.0	24	88	8	213	28	20	22	28	1.99
47163061--47163124	31	2.1	31	90	0	101	35	15	23	25	1.94
47166429--47166692	40	6.7	40	88	5	351	25	21	27	26	1.99
47169369--47169539	43	4.0	43	74	8	150	34	25	15	24	1.95
47171433--47171662	95	2.4	94	90	2	343	26	27	18	27	1.98
47171438--47171611	48	3.6	48	84	1	251	24	27	19	28	1.99
47171433--47171659	48	4.8	48	79	4	226	26	27	17	28	1.98
47172595--47172741	39	3.7	39	90	0	222	19	29	27	23	1.98
47180348--47180441	39	2.4	40	85	1	111	21	29	27	21	1.98
47180378--47180455	39	2.0	39	94	0	138	20	30	25	23	1.98
47183834--47183898	28	2.3	28	94	0	112	35	26	7	30	1.84
47184004--47184093	28	3.2	27	81	7	92	20	25	23	31	1.98
47184015--47184093	27	2.8	28	79	9	90	21	26	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47184537--47184577	18	2.3	18	86	0	55	24	2	4	68	1.22
47191136--47191184	23	2.0	25	88	7	75	24	14	18	42	1.87
47193244--47193557	46	6.6	49	73	11	176	27	20	28	23	1.99
47197646--47197832	48	3.9	48	88	0	239	26	27	18	27	1.98
47197643--47197832	96	2.0	96	86	2	265	27	27	17	27	1.98
47198205--47198250	24	1.9	24	100	0	92	43	23	13	19	1.86
47201184--47201369	55	3.4	54	80	11	195	24	23	17	34	1.95
47214093--47214162	27	2.6	26	95	2	95	31	28	12	27	1.93
47214093--47214190	28	3.5	28	90	2	135	31	28	13	26	1.94
47222200--47222298	27	3.5	28	90	2	137	31	28	13	27	1.94
47222201--47222298	28	3.5	28	90	2	117	31	28	13	26	1.94
47225426--47225496	24	3.0	24	95	0	124	35	1	38	25	1.65
47225426--47225519	48	1.9	48	81	10	111	35	4	37	23	1.75
47226914--47227025	27	4.2	26	80	7	116	18	24	21	35	1.95
47229316--47229364	25	2.0	25	100	0	98	26	24	12	36	1.91
47229318--47229378	25	2.4	25	88	0	86	24	26	11	37	1.89
47233729--47233767	20	2.0	20	85	10	53	23	2	20	53	1.57
47238883--47238909	2	13.5	2	100	0	54	0	0	48	51	1.00
47239648--47239761	40	2.8	40	87	7	169	25	23	28	22	2.00
47242792--47242857	33	2.0	33	96	0	123	40	15	22	21	1.90
47247680--47248120	47	9.4	47	91	0	668	32	9	31	26	1.89
47247736--47247810	22	3.3	22	65	17	62	29	10	33	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47247898--47247972	23	3.2	23	63	29	59	36	8	28	28	1.85
47248239--47248318	37	2.2	37	86	4	108	23	17	31	27	1.97
47250117--47250454	40	8.4	40	96	0	613	23	21	28	25	1.99
47250117--47250647	80	6.3	80	83	11	675	23	21	28	25	1.99
47250427--47250482	28	2.0	28	96	0	103	26	21	26	25	1.99
47250455--47250647	40	4.8	40	94	0	332	24	21	27	25	1.99
47250347--47250647	108	2.7	111	90	6	446	24	21	28	25	1.99
47250307--47250602	148	2.0	148	96	0	547	23	20	29	26	1.99
47250267--47250642	188	2.0	188	97	0	716	23	21	28	26	1.99
47253361--47253801	47	9.4	47	91	0	668	32	9	31	26	1.89
47253417--47253491	22	3.3	22	65	17	62	29	10	33	26	1.90
47253579--47253653	23	3.2	23	63	29	59	36	8	28	28	1.85
47253920--47253999	37	2.2	37	86	4	108	23	17	31	27	1.97
47267949--47268091	37	3.9	37	94	0	232	26	31	17	24	1.97
47268240--47268425	100	1.9	96	89	6	284	30	26	6	36	1.82
47268240--47268426	48	3.8	48	88	5	277	31	26	6	36	1.82
47268396--47268589	47	4.1	47	90	0	280	26	29	10	33	1.90
47272709--47272841	69	1.9	70	90	1	214	32	14	16	36	1.89
47274610--47274849	48	5.0	48	92	2	390	34	6	28	30	1.82
47274610--47274849	98	2.5	96	90	2	390	34	6	28	30	1.82
47274985--47275099	37	3.1	37	92	2	178	26	18	28	26	1.98
47280526--47280575	23	2.2	23	81	0	55	68	16	6	10	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47280538--47280579	12	3.6	12	77	6	50	69	16	2	11	1.29
47280715--47280749	3	11.7	3	93	0	61	31	31	2	34	1.73
47286857--47286912	29	2.0	28	92	3	94	48	12	7	32	1.68
47288923--47289001	37	2.1	37	90	0	122	25	31	18	24	1.98
47289120--47289545	47	9.1	47	93	0	665	28	29	8	32	1.88
47292284--47292324	13	3.2	13	82	0	55	17	29	31	21	1.96
47308154--47308324	93	1.8	93	93	0	297	27	28	22	22	1.99
47308145--47308321	46	3.8	46	76	12	200	28	27	21	22	1.99
47336450--47336511	26	2.4	26	88	0	97	25	3	24	46	1.67
47364585--47364662	29	2.7	28	84	11	104	25	15	30	28	1.96
47364615--47364944	174	1.9	175	91	2	547	30	14	23	31	1.94
47372664--47372741	29	2.7	28	84	11	104	25	15	30	28	1.96
47372694--47373023	174	1.9	175	91	2	538	30	14	23	31	1.94
47378328--47378405	29	2.7	28	84	11	104	25	15	30	28	1.96
47378358--47378687	174	1.9	175	91	2	547	30	14	23	31	1.94
47381140--47381179	6	6.8	6	91	2	55	75	12	12	0	1.06
47388723--47388899	27	6.5	27	79	6	160	24	16	29	29	1.97
47388723--47388878	82	1.9	81	83	6	199	25	16	29	28	1.97
47388719--47388899	82	2.2	81	79	4	195	25	16	28	29	1.97
47390853--47390928	30	2.5	30	95	0	134	31	30	7	30	1.86
47392970--47393045	30	2.5	30	95	0	134	31	30	7	30	1.86
47401200--47401350	27	5.6	27	79	7	153	25	17	29	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47401200--47401350	82	1.9	81	83	6	198	25	17	29	28	1.97
47401199--47401376	27	6.6	27	75	6	126	25	16	29	28	1.97
47401281--47401387	27	3.9	27	81	1	79	25	16	28	28	1.97
47402803--47402972	92	1.8	93	84	5	236	22	28	20	29	1.98
47403331--47403406	30	2.5	30	95	0	134	31	30	7	30	1.86
47410536--47410574	18	2.2	18	90	0	60	61	10	2	25	1.41
47410562--47410599	17	2.2	18	85	4	51	55	10	0	34	1.34
47417666--47417743	38	2.1	38	97	0	147	42	8	15	33	1.78
47437306--47437465	68	2.4	66	81	10	173	23	28	15	32	1.95
47440508--47440533	12	2.2	12	100	0	52	26	15	7	50	1.71
47442153--47442260	37	2.8	39	74	8	112	30	25	19	24	1.98
47443298--47443328	12	2.6	12	94	0	53	0	25	0	74	0.82
47443850--47443880	3	10.3	3	92	0	53	61	3	0	35	1.12
47444134--47444172	19	2.1	19	100	0	78	35	10	5	48	1.59
47445933--47445998	31	2.1	31	94	0	114	45	12	3	39	1.57
47446418--47446467	21	2.4	21	89	0	73	24	2	34	40	1.66
47448999--47449246	53	4.8	53	76	9	194	36	17	24	20	1.94
47449009--47449199	108	1.8	103	86	5	274	35	17	24	22	1.96
47449438--47449468	16	1.9	16	93	0	53	41	0	22	35	1.54
47456657--47456944	46	6.0	46	83	8	281	22	24	15	37	1.93
47456818--47456910	30	3.2	30	64	27	83	22	24	17	35	1.95
47456819--47456932	56	2.0	56	98	0	219	23	24	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47458873--47458913	20	2.0	21	90	4	66	0	24	0	75	0.80
47459098--47459161	31	2.0	33	82	14	82	48	4	0	46	1.23
47468442--47468479	20	1.9	20	88	0	58	47	5	10	36	1.61
47470725--47470753	14	2.0	15	93	6	51	41	13	0	44	1.44
47475058--47475353	50	5.9	50	78	7	278	26	17	25	30	1.98
47475109--47475353	101	2.4	101	85	2	316	26	19	24	28	1.99
47484047--47484226	27	6.6	27	82	5	182	30	28	14	26	1.95
47484047--47484226	55	3.3	55	81	5	202	30	28	14	26	1.95
47484069--47484225	82	1.9	81	88	3	235	30	28	14	26	1.95
47491961--47492135	27	6.6	27	79	6	151	30	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320