genome.fa.s12.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  98  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31477321--31477514	47	4.1	47	90	0	289	33	11	28	26	1.91
31477721--31477829	37	2.9	37	95	0	191	22	19	31	26	1.98
31479103--31479483	40	9.6	40	88	0	530	24	20	27	27	1.99
31479096--31479468	159	2.3	160	89	0	577	24	20	27	27	1.99
31483528--31483721	47	4.1	47	90	0	289	33	11	28	26	1.91
31483928--31484036	37	2.9	37	95	0	191	22	19	31	26	1.98
31485309--31485690	40	9.6	40	88	0	539	24	21	27	26	1.99
31489449--31489642	47	4.1	47	88	0	271	34	11	28	25	1.91
31489849--31489957	37	2.9	37	91	0	164	22	19	31	27	1.97
31494910--31495016	29	3.7	29	96	0	187	28	13	28	30	1.94
31496670--31496846	40	4.6	40	89	6	242	24	21	25	27	1.99
31496664--31496878	80	2.8	77	80	11	233	26	20	24	27	1.99
31502411--31502559	55	2.8	53	79	5	138	26	16	29	28	1.97
31502384--31502559	27	6.6	27	76	7	135	25	16	28	29	1.97
31502385--31502533	82	1.8	79	81	9	185	25	17	28	28	1.97
31510354--31510529	27	6.5	26	84	5	174	26	15	28	30	1.96
31510354--31510529	54	3.3	53	81	7	194	26	15	28	30	1.96
31510354--31510508	81	1.9	81	88	5	233	26	15	28	29	1.96
31510350--31510529	81	2.2	81	83	3	229	26	15	27	30	1.96
31513819--31513968	55	2.8	54	80	4	149	26	15	29	28	1.96
31513791--31513968	27	6.6	27	77	6	146	25	15	28	30	1.96
31513792--31513947	82	1.9	81	81	6	190	25	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31521276--31521479	40	5.1	40	83	2	241	23	25	27	24	2.00
31521272--31521479	80	2.6	80	90	3	312	24	24	27	24	2.00
31524739--31524907	47	3.6	47	91	0	275	36	13	24	26	1.92
31524886--31525015	55	2.4	53	84	6	172	35	17	26	20	1.95
31524886--31525052	53	3.1	54	81	6	185	37	15	26	20	1.92
31527560--31527589	13	2.3	13	94	0	51	3	33	36	26	1.73
31530823--31530856	18	1.9	18	88	5	52	29	14	14	41	1.86
31532978--31533101	26	4.8	26	87	3	171	29	23	19	27	1.98
31533159--31533184	9	2.9	9	100	0	52	42	23	0	34	1.54
31533159--31533204	5	9.6	5	77	17	53	39	21	4	34	1.73
31533168--31533206	20	2.0	20	90	10	62	35	20	7	35	1.81
31537975--31538089	37	3.1	36	92	2	176	26	32	18	22	1.97
31538208--31538481	47	5.7	47	90	2	388	28	30	9	32	1.88
31538208--31538481	96	2.9	94	89	4	388	28	30	9	32	1.88
31543249--31543426	27	6.6	27	84	3	205	29	28	15	26	1.96
31543270--31543425	82	1.9	81	88	3	233	29	28	15	26	1.96
31545004--31545175	40	4.3	40	87	2	195	26	28	22	22	1.99
31545487--31545565	29	2.7	29	86	5	106	27	32	15	24	1.95
31545547--31545649	43	2.4	43	100	0	206	26	35	15	22	1.94
31547513--31547628	37	3.1	37	93	0	187	26	32	18	22	1.97
31547747--31548020	47	5.7	47	90	2	379	28	29	9	32	1.88
31547747--31548020	96	2.9	94	87	4	379	28	29	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31555887--31555958	26	2.8	26	95	2	128	30	23	19	26	1.98
31556008--31556055	20	2.4	20	86	6	71	37	18	8	35	1.81
31556008--31556055	9	4.7	11	75	17	50	37	18	8	35	1.81
31556090--31556137	25	1.9	25	86	0	69	27	18	22	31	1.97
31557445--31557469	11	2.3	11	100	0	50	92	0	8	0	0.40
31563270--31563374	44	2.4	43	80	10	117	30	25	19	24	1.98
31567385--31567435	27	1.9	26	84	4	66	19	27	17	35	1.94
31574941--31574999	27	2.3	25	82	5	64	22	22	20	35	1.96
31586538--31586786	27	9.2	27	89	0	336	30	22	7	40	1.80
31586774--31586986	27	7.9	27	84	4	189	39	20	8	30	1.83
31586546--31586788	81	3.0	81	90	1	371	30	22	6	40	1.80
31586711--31586931	54	4.1	54	80	4	169	36	23	9	31	1.86
31586549--31586828	81	3.5	81	86	1	213	31	22	7	38	1.81
31586779--31586986	54	3.9	54	84	3	233	40	20	9	29	1.83
31586779--31586986	81	2.6	82	84	5	246	40	20	9	29	1.83
31586943--31587164	54	4.1	54	82	8	170	38	17	17	27	1.92
31586977--31587191	81	2.7	81	87	0	286	36	18	19	26	1.94
31586972--31587173	27	7.5	27	86	4	255	37	18	18	25	1.94
31587394--31587487	25	3.8	25	81	1	109	24	25	22	27	2.00
31587394--31587500	25	4.4	24	80	3	90	27	23	22	27	1.99
31591164--31591335	40	4.3	40	86	5	215	26	27	21	25	1.99
31591164--31591388	80	2.8	79	79	7	231	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31591320--31591397	40	1.9	41	82	10	97	26	28	20	24	1.99
31598410--31598581	40	4.3	40	85	5	197	26	26	20	25	1.99
31598377--31598581	40	5.2	41	82	4	174	25	26	20	26	1.99
31598566--31598643	40	1.9	41	82	10	97	26	28	20	24	1.99
31602627--31602695	25	2.8	25	70	16	70	21	23	20	34	1.96
31602676--31602754	24	3.2	24	75	8	88	18	24	21	35	1.96
31602758--31602817	25	2.4	25	91	5	86	28	26	16	28	1.97
31602677--31602781	49	2.1	49	80	3	113	21	23	19	35	1.96
31602758--31602836	25	3.2	24	85	7	77	26	26	16	30	1.97
31607457--31607536	17	4.4	19	76	13	78	68	3	3	23	1.22
31608307--31608331	5	5.0	5	100	0	50	80	20	0	0	0.72
31608087--31611006	890	3.3	885	88	2	4175	35	9	16	37	1.82
31621020--31621235	55	4.0	54	78	8	242	33	17	25	23	1.96
31621027--31621229	108	1.9	110	87	6	306	32	18	25	24	1.97
31623541--31623583	22	2.0	22	90	9	70	37	0	25	37	1.56
31629932--31630526	47	12.6	47	93	1	1010	31	8	30	28	1.87
31630645--31630723	37	2.1	37	88	4	115	25	18	30	25	1.98
31638041--31638069	14	2.1	14	100	0	58	51	6	0	41	1.28
31647912--31648027	58	2.0	59	94	1	207	34	11	21	32	1.89
31651789--31651845	20	2.8	20	81	2	69	24	12	35	28	1.91
31653506--31653611	48	2.2	48	85	9	137	14	24	1	59	1.45
31656231--31656277	20	2.3	20	85	0	67	21	12	36	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31658775--31658800	7	3.7	7	100	0	52	57	0	0	42	0.98
31660346--31660400	8	6.5	8	80	12	65	25	5	0	69	1.10
31660325--31660390	27	2.4	27	94	2	114	28	7	1	62	1.32
31660755--31660797	20	2.2	20	91	0	68	27	6	11	53	1.63
31661487--31661555	29	2.3	31	82	7	88	30	15	10	43	1.80
31661454--31661555	29	3.4	29	79	5	87	29	15	10	44	1.81
31661500--31661565	31	2.1	31	83	5	80	37	15	6	40	1.72
31661762--31661813	22	2.3	23	81	15	63	46	3	0	50	1.20
31662841--31662910	20	3.5	20	84	0	104	25	35	7	31	1.83
31668856--31668925	25	3.0	24	78	15	67	34	5	1	58	1.31
31670174--31670227	25	2.2	25	83	3	65	38	16	7	37	1.77
31673556--31673833	43	6.5	42	71	13	203	29	24	20	24	1.99
31673504--31673833	85	3.9	85	86	1	421	29	25	20	25	1.99
31679099--31679276	27	6.6	27	83	3	196	30	27	15	26	1.96
31679120--31679275	82	1.9	81	86	3	224	30	27	15	26	1.96
31679756--31679782	12	2.2	12	100	0	54	40	0	7	51	1.30
31687208--31687385	27	6.6	27	84	3	205	29	28	15	26	1.96
31687229--31687384	82	1.9	81	88	3	233	29	28	15	26	1.96
31689420--31689597	27	6.6	27	83	3	205	26	15	28	29	1.96
31689421--31689576	82	1.9	81	88	3	233	26	15	28	29	1.96
31689417--31689597	82	2.2	81	83	2	229	27	15	27	29	1.96
31697315--31697490	27	6.6	27	81	7	189	27	15	27	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31697312--31697490	81	2.2	79	81	5	209	27	15	27	29	1.96
31714370--31714546	27	6.5	26	77	5	120	25	16	28	29	1.97
31714397--31714546	55	2.8	54	79	4	140	26	16	29	28	1.96
31714370--31714520	82	1.9	81	81	6	189	25	17	27	29	1.97
31719294--31719437	40	3.6	40	94	0	252	24	22	27	26	2.00
31719294--31719469	80	2.2	80	87	3	248	26	21	26	26	2.00
31720824--31720891	28	2.4	28	82	2	73	26	14	30	27	1.95
31741723--31741925	44	4.6	44	82	3	232	26	18	25	30	1.98
31742753--31742801	21	2.2	23	85	7	66	30	0	26	42	1.55
31749408--31749562	43	3.6	43	82	9	190	23	18	28	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320