genome.fa.s12.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  160  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52775083--52775941	250	3.4	248	76	17	774	35	20	16	27	1.94
52775578--52775612	14	2.5	14	95	0	61	57	2	20	20	1.54
52775294--52775612	177	1.8	177	90	2	525	36	19	16	27	1.93
52775503--52776165	85	8.0	83	75	14	526	33	20	16	29	1.94
52775753--52776179	75	5.4	76	71	18	277	35	19	15	29	1.93
52775685--52776179	162	3.1	159	80	7	513	34	19	15	29	1.94
52776073--52776107	14	2.6	14	90	4	54	51	5	14	28	1.65
52783644--52783697	18	3.3	18	66	28	57	22	7	48	22	1.75
52783639--52783737	30	3.3	30	91	0	162	18	6	48	27	1.71
52786085--52786124	20	2.0	20	85	9	55	72	5	7	15	1.24
52787618--52787657	11	3.5	11	86	3	53	47	7	5	40	1.54
52794620--52794663	19	2.2	20	88	4	63	65	2	2	29	1.16
52799385--52799586	43	4.9	41	79	6	176	23	29	20	26	1.99
52799384--52799530	40	3.6	40	77	4	116	24	27	19	28	1.98
52799465--52799635	43	4.0	43	81	7	170	24	29	20	25	1.99
52799466--52799629	86	1.9	85	82	8	208	23	30	21	24	1.99
52801423--52801452	15	2.1	15	93	6	53	36	26	6	30	1.82
52803801--52803862	6	10.2	6	75	3	61	74	0	17	8	1.06
52803789--52803842	12	4.8	12	72	21	53	70	0	18	11	1.16
52804181--52804255	36	2.1	36	89	0	114	36	12	17	34	1.87
52807529--52807720	104	1.8	105	93	1	332	22	29	22	25	1.99
52810238--52810428	69	2.8	68	83	3	238	43	16	11	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52810625--52810774	68	2.2	68	84	3	196	42	18	13	26	1.86
52825112--52825229	43	2.8	42	85	1	146	31	33	17	16	1.93
52832843--52832886	21	2.1	21	82	0	52	31	9	9	50	1.65
52838181--52838304	47	2.6	47	94	0	221	25	28	17	28	1.98
52841318--52841495	27	6.6	26	80	6	169	26	16	28	28	1.97
52841319--52841474	82	1.9	81	86	3	224	26	16	28	28	1.97
52841315--52841495	82	2.2	81	82	2	220	26	16	28	28	1.97
52847803--52847882	37	2.2	37	86	4	108	27	31	17	23	1.97
52848013--52848437	47	9.1	47	91	0	647	26	31	10	31	1.90
52848145--52848222	25	3.2	25	65	17	74	29	28	7	34	1.85
52848311--52848384	22	3.2	22	64	17	60	25	33	10	29	1.90
52854151--52854328	27	6.6	26	80	6	169	26	16	28	28	1.97
52854152--52854307	82	1.9	81	86	3	224	26	16	28	28	1.97
52854148--52854328	82	2.2	81	82	2	220	26	16	28	28	1.97
52857437--52857466	15	2.0	15	93	0	51	20	10	26	43	1.83
52865248--52865283	17	2.2	17	95	5	65	66	5	11	16	1.40
52865255--52865311	16	3.5	16	79	15	64	61	1	12	24	1.40
52865387--52865767	3	125.7	3	70	12	172	58	3	6	30	1.42
52896832--52896950	53	2.2	55	93	4	206	21	3	31	42	1.69
52897796--52897847	15	3.5	15	81	7	61	28	9	0	61	1.27
52899895--52900079	62	3.0	62	91	0	298	41	18	4	35	1.72
52901308--52901366	24	2.5	24	81	8	68	79	13	3	3	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52901309--52901364	12	5.0	11	81	12	53	80	12	3	3	0.97
52901309--52901365	11	5.0	11	80	6	60	80	12	3	3	0.96
52902807--52903211	44	9.2	44	78	4	361	27	16	26	29	1.97
52902804--52903173	131	2.8	132	95	2	672	27	16	25	30	1.97
52903259--52904854	46	35.2	46	62	16	317	27	20	22	29	1.98
52903634--52903830	45	4.4	45	64	13	118	27	18	23	29	1.98
52903600--52903988	88	4.4	91	65	10	219	27	20	22	30	1.98
52904002--52904385	95	4.0	95	98	0	732	29	20	21	28	1.98
52904081--52904338	50	5.4	50	66	19	188	30	19	22	26	1.98
52904131--52904383	45	5.4	44	66	19	145	29	19	22	28	1.98
52903152--52904922	687	2.6	678	85	6	2519	27	20	22	29	1.98
52904725--52904910	46	4.2	46	65	13	109	27	20	23	28	1.99
52903152--52904923	134	13.0	134	88	4	2574	27	20	22	29	1.98
52904825--52905018	95	2.0	95	94	0	343	29	18	22	28	1.97
52904999--52905191	44	4.4	44	68	2	120	30	19	25	25	1.98
52905085--52905276	43	4.4	43	67	7	120	28	19	26	25	1.99
52904923--52905277	130	2.7	130	92	0	566	28	20	24	27	1.99
52905031--52905210	44	4.1	44	68	5	114	26	22	25	25	2.00
52905959--52906080	55	2.2	56	97	1	228	21	3	32	42	1.69
52906930--52906981	15	3.5	15	81	7	61	28	9	0	61	1.27
52908425--52908542	42	2.8	43	77	2	132	30	25	16	27	1.96
52908514--52909497	501	2.0	501	99	0	1950	34	17	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52913319--52913466	67	2.2	69	78	10	162	32	16	28	22	1.96
52915831--52915871	20	2.0	20	90	0	64	43	9	24	21	1.83
52916363--52916440	40	2.0	39	92	2	129	43	11	14	30	1.80
52916426--52916582	47	3.3	47	88	0	224	51	12	8	27	1.68
52919540--52919670	49	2.7	49	86	0	172	27	19	26	26	1.99
52929590--52929675	43	2.0	43	84	8	113	26	26	19	26	1.99
52937942--52937987	10	4.5	10	81	5	56	15	23	21	39	1.92
52937939--52937987	21	2.4	20	89	3	71	14	22	22	40	1.90
52938212--52938240	13	2.2	13	100	0	58	27	0	10	62	1.28
52942610--52942655	10	4.5	10	81	5	56	15	23	21	39	1.92
52942607--52942655	21	2.4	20	89	3	71	14	22	22	40	1.90
52942880--52942908	13	2.2	13	100	0	58	27	0	10	62	1.28
52945167--52945338	93	1.8	93	93	0	299	20	20	29	28	1.98
52945171--52945345	46	3.8	46	78	13	187	20	20	29	29	1.98
52954065--52954162	40	2.5	39	81	5	115	27	30	17	24	1.97
52956013--52956141	46	2.8	46	83	5	163	25	20	30	24	1.98
52956886--52956926	22	1.9	21	85	5	55	36	7	12	43	1.70
52957527--52957566	21	2.0	20	90	5	62	10	37	27	25	1.88
52959092--52959149	23	2.6	22	79	12	66	31	24	12	32	1.91
52964751--52964803	27	2.0	27	88	0	79	26	15	20	37	1.92
52968350--52968375	5	5.2	5	100	0	52	80	0	0	19	0.71
52973498--52973558	27	2.3	27	82	5	70	27	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52979916--52979973	24	2.4	24	88	2	89	15	20	22	41	1.90
52982137--52982235	44	2.3	42	80	10	110	27	17	23	32	1.96
52982144--52982291	42	3.4	44	75	10	117	25	16	26	31	1.97
52989754--52989908	43	3.6	44	78	11	169	25	18	26	29	1.98
52989747--52989891	42	3.4	41	81	11	150	26	18	23	31	1.98
52991642--52991815	46	3.7	46	77	10	158	28	19	28	23	1.98
52991645--52991860	46	4.7	45	71	15	120	28	18	28	24	1.98
52994804--52994980	27	6.6	27	83	5	187	29	27	14	27	1.95
53009115--53009156	19	2.2	20	87	8	61	28	9	19	42	1.82
53010549--53010595	19	2.5	19	89	0	76	36	0	2	61	1.08
53010549--53010697	19	7.6	19	71	12	72	32	2	6	59	1.33
53010676--53010713	16	2.4	17	78	13	53	23	0	2	73	0.95
53010914--53010955	17	2.4	18	80	15	52	35	0	2	61	1.09
53013921--53014064	74	2.0	74	87	4	211	45	9	13	31	1.76
53014238--53014298	22	2.7	23	77	7	63	40	18	9	31	1.83
53014327--53014364	4	9.5	4	83	11	51	73	2	0	23	0.95
53014326--53014365	20	2.0	20	95	0	71	72	2	0	25	0.97
53014497--53014543	12	4.0	12	83	2	51	44	12	17	25	1.84
53014508--53014553	24	1.9	24	86	0	65	41	13	17	28	1.86
53016339--53016387	12	3.9	13	73	26	52	34	6	2	57	1.35
53020606--53020646	21	1.9	22	95	5	75	73	0	12	14	1.11
53022020--53022284	44	5.8	44	74	14	223	31	20	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53022049--53022334	142	2.0	141	93	0	482	33	18	19	27	1.96
53022411--53022584	49	3.6	49	71	5	145	34	22	18	23	1.96
53022390--53022663	98	2.8	99	85	2	356	32	21	20	24	1.98
53041126--53041161	14	2.6	14	100	0	72	27	5	16	50	1.68
53044068--53044100	15	2.2	15	94	0	57	0	21	0	78	0.75
53053778--53053813	14	2.6	14	100	0	72	50	16	5	27	1.68
53060855--53061027	46	3.7	46	74	11	174	22	20	27	30	1.98
53060852--53061022	93	1.8	93	91	2	281	22	20	28	29	1.98
53061542--53061596	27	2.0	27	100	0	110	23	7	21	47	1.76
53066550--53066812	40	6.6	40	87	3	316	27	27	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320