genome.fa.s12.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  101  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32398019--32398169	55	2.8	55	82	3	180	27	15	28	28	1.96
32398017--32398172	27	5.7	27	81	6	163	26	16	28	28	1.97
32398016--32398193	27	6.6	27	79	5	162	26	15	29	28	1.96
32400521--32400804	48	5.9	47	79	5	214	28	17	29	24	1.98
32400534--32400807	96	2.9	96	79	9	267	28	18	29	23	1.97
32404012--32404137	42	3.0	43	79	6	148	20	17	26	34	1.95
32404027--32404130	43	2.5	42	82	4	129	23	17	26	32	1.96
32411636--32411797	43	3.8	43	80	11	179	24	18	24	32	1.97
32415533--32415592	30	2.0	30	96	0	111	35	30	15	20	1.93
32421567--32421844	48	5.8	47	74	7	184	28	16	28	26	1.97
32427215--32427250	17	2.1	17	89	0	54	33	5	8	52	1.55
32434515--32434692	27	6.6	27	79	3	160	28	29	16	25	1.97
32434536--32434691	82	1.9	81	82	3	197	27	29	17	25	1.97
32453450--32453627	27	6.6	27	79	3	160	28	29	16	25	1.97
32453471--32453626	82	1.9	81	82	3	197	27	29	17	25	1.97
32458631--32458702	20	3.3	20	66	26	56	20	22	29	27	1.99
32458550--32458713	46	3.5	46	75	17	167	21	20	29	28	1.98
32471062--32471107	21	2.3	20	78	14	51	45	17	6	30	1.73
32471931--32471983	10	5.1	10	80	8	52	60	3	0	35	1.15
32471941--32471983	22	2.0	22	90	0	68	58	2	0	39	1.11
32477626--32478042	47	8.6	47	87	7	582	29	29	8	32	1.87
32477794--32478010	59	4.1	59	77	17	235	29	30	9	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32477747--32478042	106	2.9	105	90	7	461	29	29	9	32	1.88
32477700--32478010	155	2.0	153	94	1	550	29	29	9	31	1.88
32477670--32478042	202	1.9	200	94	1	665	29	29	8	32	1.87
32481132--32481403	40	6.8	40	91	0	409	26	28	21	24	1.99
32482813--32483229	47	8.6	47	86	7	573	28	29	8	33	1.87
32482981--32483197	59	4.1	59	77	17	226	28	30	9	31	1.88
32482934--32483229	106	2.9	105	90	7	452	28	29	9	33	1.88
32482887--32483197	155	2.0	153	94	2	543	28	29	9	32	1.88
32482857--32483229	202	1.9	200	94	1	656	29	29	8	32	1.87
32486187--32486357	46	3.7	46	88	0	252	30	27	19	22	1.98
32491147--32491365	46	4.7	46	78	6	219	29	26	19	24	1.98
32496791--32496839	24	2.0	24	100	0	98	30	20	20	28	1.98
32498826--32498868	22	2.0	22	81	9	52	23	27	13	34	1.93
32502992--32503186	42	4.6	42	84	5	216	30	14	25	29	1.95
32511106--32511277	93	1.8	93	91	0	281	28	29	20	21	1.98
32511098--32511273	46	3.8	46	78	10	187	29	28	19	21	1.98
32514341--32514587	34	7.2	34	86	1	325	36	21	14	28	1.92
32514807--32516907	793	2.7	793	99	0	4186	35	20	9	35	1.85
32518430--32518467	20	1.9	20	94	0	67	34	31	15	18	1.92
32520313--32520551	42	5.7	42	81	4	259	29	15	26	28	1.96
32527660--32527707	15	3.2	15	80	11	62	58	14	14	12	1.64
32531909--32531956	15	3.2	15	80	11	62	58	14	14	12	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32538866--32538987	42	2.9	41	78	4	127	29	16	24	29	1.96
32548073--32548123	23	2.2	23	100	0	102	29	25	7	37	1.84
32548313--32548383	32	2.2	32	92	2	115	42	14	21	22	1.88
32553775--32553834	30	2.0	30	100	0	120	40	0	6	53	1.27
32554916--32555074	27	5.9	27	82	11	184	34	22	24	18	1.96
32554934--32555074	54	2.6	54	93	2	239	34	23	24	17	1.96
32555466--32555495	8	3.8	8	90	0	51	3	26	26	43	1.70
32556674--32556782	26	4.2	26	93	0	191	35	23	7	33	1.83
32558052--32558223	46	3.7	46	80	13	174	29	19	27	23	1.98
32558056--32558259	46	4.4	46	74	15	136	29	18	27	24	1.98
32558055--32558313	140	1.9	140	81	4	326	29	18	27	24	1.98
32559392--32559431	21	1.9	21	94	0	71	15	35	22	27	1.94
32565926--32565969	19	2.3	19	84	7	54	22	20	11	45	1.83
32568453--32568480	10	2.8	10	100	0	56	92	7	0	0	0.37
32568453--32568492	11	3.6	11	90	6	55	90	5	0	5	0.57
32569344--32569446	53	1.9	53	96	0	188	25	21	4	48	1.70
32569361--32569446	27	3.2	27	65	15	79	25	18	4	51	1.66
32569892--32569999	46	2.3	46	87	0	162	31	13	30	24	1.94
32570351--32570831	45	10.8	44	64	12	122	32	18	21	27	1.96
32570350--32570924	89	6.5	89	72	8	402	32	18	21	27	1.96
32570353--32570785	44	9.8	44	67	10	209	32	18	21	27	1.97
32570350--32570924	178	3.2	177	85	2	767	32	18	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32572560--32572587	4	7.0	4	100	0	56	50	0	0	50	1.00
32572787--32572848	24	2.7	23	78	16	58	27	4	1	66	1.21
32572890--32572943	16	3.4	16	73	16	51	27	7	3	61	1.40
32577731--32577868	68	2.0	68	98	0	267	22	18	19	39	1.92
32582908--32583053	40	3.7	40	89	0	204	25	23	26	24	2.00
32584436--32584477	20	2.0	22	86	9	61	45	0	0	54	0.99
32584533--32584603	15	4.5	15	73	16	54	49	1	1	47	1.18
32585611--32585661	26	2.0	26	96	3	95	60	3	3	31	1.33
32586494--32586537	13	3.4	13	78	9	54	65	11	9	13	1.46
32586494--32586545	27	2.0	26	88	3	77	61	9	7	21	1.51
32592583--32592619	17	2.1	18	90	5	58	62	0	0	37	0.96
32599027--32599068	21	1.9	23	85	9	61	35	2	30	30	1.71
32600083--32600187	27	3.9	27	73	19	103	20	16	14	49	1.79
32600083--32600187	57	2.0	53	83	12	135	20	16	14	49	1.79
32611314--32611338	11	2.3	11	100	0	50	84	0	0	16	0.63
32624068--32624197	48	2.7	47	86	4	179	20	18	24	36	1.95
32629835--32629993	43	3.7	43	80	9	146	23	18	25	32	1.97
32643150--32643242	26	3.6	26	89	0	141	20	13	34	31	1.92
32643340--32643398	27	2.2	27	84	0	73	50	10	22	16	1.75
32644653--32644809	70	2.3	69	87	5	228	38	16	5	39	1.71
32646072--32646125	20	2.7	20	85	0	72	29	25	5	38	1.79
32652556--32652733	27	6.6	27	79	3	160	28	29	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32652577--32652732	82	1.9	81	82	3	197	27	29	17	25	1.97
32660496--32660673	27	6.6	27	79	3	151	28	29	16	25	1.97
32660517--32660672	82	1.9	81	82	3	197	27	29	17	25	1.97
32663643--32663692	24	2.1	24	96	0	91	24	38	24	14	1.92
32682424--32682501	26	3.0	26	88	1	104	24	14	20	41	1.89
32699827--32699917	42	2.2	42	84	4	112	35	19	21	23	1.96
32703066--32703183	42	2.8	42	89	3	184	29	22	13	33	1.93
32704958--32704986	13	2.2	13	100	0	58	13	6	6	72	1.26
32716213--32716280	34	2.0	34	100	0	136	47	2	20	29	1.65
32719225--32719332	24	4.7	24	74	13	93	18	30	0	50	1.47
32719231--32719287	19	3.1	19	78	11	66	15	33	0	50	1.44
32719226--32719308	43	1.9	43	82	0	103	18	31	0	50	1.47
32724751--32724993	45	5.4	45	83	0	198	20	26	14	37	1.92
32726570--32726599	8	3.9	8	91	8	53	90	0	10	0	0.47
32726571--32726599	15	1.9	15	100	0	58	89	0	10	0	0.48
32728918--32729009	42	2.2	42	96	1	168	23	32	28	15	1.95
32738901--32738990	36	2.5	36	87	0	135	42	30	10	17	1.82
32760322--32760349	14	2.0	14	100	0	56	35	14	14	35	1.86
32764561--32764604	21	2.1	21	91	0	70	27	11	43	18	1.84
32766609--32766639	14	2.1	15	94	5	55	6	3	35	54	1.42
32769941--32770052	36	3.1	36	77	2	118	39	28	12	19	1.88
32779907--32780129	79	2.8	78	82	9	265	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779907--32780129	39	5.7	40	86	8	266	24	27	22	25	2.00
32787885--32788068	40	4.7	40	81	11	195	25	26	22	26	2.00
32787885--32788068	79	2.3	82	81	11	215	25	26	22	26	2.00
32789925--32790054	47	2.8	46	87	4	188	34	30	15	20	1.93
32792383--32792597	40	5.4	40	90	4	321	26	27	22	24	2.00
32805265--32805332	33	2.1	33	100	0	136	23	8	30	36	1.85
32820114--32820182	36	1.9	36	96	0	129	28	18	18	33	1.95
32823683--32823741	30	2.0	30	100	0	118	23	18	20	37	1.94
32828000--32828157	43	3.7	42	81	4	104	32	24	15	27	1.96
32828016--32828166	43	3.5	43	82	3	162	32	23	15	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320