genome.fa.s12.2.7.7.80.10.50.1000.306.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  306  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97627357--97627723	151	2.4	151	93	0	626	30	24	17	27	1.97
97627357--97627729	50	7.4	50	74	3	318	30	24	17	27	1.97
97630476--97630524	22	2.2	22	78	7	55	59	8	12	20	1.58
97653060--97653093	18	1.9	18	88	5	52	11	5	8	73	1.24
97657997--97658090	23	4.1	23	85	0	134	22	25	4	47	1.69
97660853--97660946	23	4.1	23	87	0	143	22	24	4	48	1.68
97662388--97662428	19	2.1	20	86	4	57	70	4	2	21	1.18
97662912--97662978	21	3.1	21	76	16	64	64	2	4	28	1.28
97662945--97662982	19	1.9	21	89	10	62	63	0	5	31	1.17
97663266--97663317	19	2.7	20	82	11	63	36	1	0	61	1.07
97663543--97663581	15	2.6	16	80	12	55	46	0	0	53	1.00
97675271--97675363	40	2.5	35	84	8	105	33	9	25	31	1.88
97681197--97681244	21	2.3	20	85	3	60	37	27	6	29	1.81
97681316--97681381	22	3.0	23	71	13	57	25	1	30	42	1.64
97684401--97684441	21	1.9	21	85	5	55	58	2	24	14	1.49
97686362--97686419	3	19.7	3	85	3	64	60	1	5	32	1.29
97686509--97686567	29	2.0	29	83	6	75	62	0	8	28	1.24
97686519--97686589	14	4.9	14	75	11	54	63	0	9	26	1.26
97686626--97686658	15	2.2	15	100	0	66	48	0	6	45	1.27
97699570--97699635	30	2.2	31	86	8	91	51	3	3	42	1.32
97708399--97708436	19	2.0	19	89	0	58	68	0	0	31	0.90
97708406--97708444	19	2.1	19	95	0	69	61	0	2	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97708554--97708624	28	2.7	26	78	10	72	59	2	4	33	1.31
97708727--97708776	20	2.3	21	80	13	57	60	4	4	32	1.34
97709223--97709280	25	2.3	26	79	5	66	68	3	0	27	1.05
97709254--97709312	21	2.8	21	82	12	68	69	6	0	23	1.12
97709359--97709391	15	2.1	16	88	11	50	69	0	0	30	0.88
97722184--97722212	15	1.9	15	100	0	58	24	27	6	41	1.80
97722219--97722269	25	2.0	25	100	0	102	23	0	27	49	1.51
97722437--97722581	78	1.9	77	86	4	211	16	18	15	48	1.81
97725260--97725309	11	4.5	11	79	0	55	28	8	4	60	1.43
97725270--97725343	36	2.1	36	85	10	98	29	6	5	58	1.47
97726194--97726266	36	2.0	36	100	0	146	24	28	13	32	1.94
97728841--97728904	32	2.0	32	96	0	119	31	9	14	45	1.76
97734415--97734542	63	2.0	63	100	0	256	21	21	17	39	1.93
97740785--97740814	13	2.3	13	94	0	51	60	0	3	36	1.14
97741627--97741697	28	2.5	28	86	0	97	49	16	12	21	1.79
97744892--97744960	31	2.3	29	85	5	84	50	11	13	24	1.74
97745789--97745815	14	1.9	14	100	0	54	55	7	7	29	1.55
97751915--97751957	19	2.2	20	83	8	52	48	0	11	39	1.40
97753914--97753947	13	2.5	14	90	4	52	64	0	2	32	1.08
97757723--97757757	3	12.3	3	93	6	56	71	0	28	0	0.86
97761565--97761595	15	2.1	15	93	0	53	0	25	0	74	0.82
97767488--97767522	4	9.2	4	87	12	56	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97768979--97769105	42	3.0	42	82	6	143	29	25	14	30	1.95
97769212--97769329	31	3.8	31	90	0	182	23	25	21	29	1.99
97769313--97769481	50	3.4	50	90	4	268	26	21	14	37	1.92
97775705--97775734	15	2.0	15	93	0	51	3	40	0	56	1.16
97778599--97778656	27	2.2	27	81	9	66	62	1	1	34	1.16
97778679--97778740	18	3.8	17	70	25	62	66	0	8	25	1.19
97778683--97778750	30	2.3	30	87	5	93	66	1	5	26	1.23
97778735--97778814	10	8.2	10	72	10	58	57	2	6	33	1.37
97779088--97779124	20	1.9	19	89	10	58	59	0	5	35	1.20
97779986--97780069	41	2.0	41	90	0	132	27	28	17	26	1.98
97780727--97780760	6	5.7	6	92	0	50	61	0	2	35	1.11
97793763--97794188	47	9.1	47	87	2	563	34	11	29	25	1.91
97793857--97794127	24	11.5	24	63	25	89	34	11	28	25	1.91
97793763--97794188	141	3.0	141	92	2	660	34	11	29	25	1.91
97794162--97794252	46	2.0	46	86	0	128	34	9	30	25	1.88
97793802--97794244	141	3.2	139	87	3	507	34	11	29	24	1.91
97795741--97795776	13	2.8	13	95	0	63	27	22	0	50	1.50
97795855--97796201	47	7.4	47	71	14	198	23	29	19	27	1.98
97795855--97796157	47	6.4	47	75	12	212	23	29	19	27	1.98
97795892--97796201	94	3.3	92	79	7	322	23	29	19	28	1.98
97795856--97796201	141	2.5	140	76	9	312	23	29	19	27	1.98
97798015--97798057	20	2.2	20	80	19	56	58	9	0	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97798203--97798309	25	4.4	23	74	13	83	57	2	4	35	1.34
97798210--97798285	23	3.2	23	70	23	68	56	1	5	36	1.30
97798200--97798374	29	6.3	27	68	18	94	56	3	4	35	1.37
97798290--97798374	27	3.0	29	77	8	93	57	3	3	35	1.33
97798264--97798336	36	2.0	36	83	5	92	54	4	4	36	1.38
97798411--97798451	21	2.0	20	85	4	55	56	7	2	34	1.40
97798456--97798534	23	3.3	23	74	11	63	63	3	5	27	1.33
97798474--97798550	24	3.3	22	74	18	66	62	2	3	31	1.27
97798606--97798664	23	2.6	23	80	15	68	57	5	1	35	1.31
97798606--97798716	13	9.5	13	65	29	56	54	5	3	36	1.41
97798597--97798722	58	2.2	54	87	9	173	56	4	3	35	1.36
97798679--97798802	22	5.7	22	70	19	100	60	4	3	32	1.31
97798647--97798716	35	2.0	36	88	8	108	54	5	4	35	1.44
97798630--97798752	58	2.1	59	79	10	137	57	4	5	32	1.41
97798701--97798803	41	2.4	41	82	11	118	62	3	2	31	1.28
97798754--97798788	17	2.1	17	88	0	52	65	0	0	34	0.93
97798966--97799092	12	10.7	12	69	19	63	58	3	3	34	1.32
97798933--97798994	21	3.0	21	73	15	56	66	0	4	29	1.12
97799013--97799098	28	3.4	25	72	24	65	56	4	2	36	1.33
97799024--97799063	20	2.0	21	85	14	57	57	5	0	37	1.21
97799184--97799240	9	6.2	9	80	10	62	57	0	3	38	1.16
97799183--97799234	18	2.9	18	86	8	79	57	0	3	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97815350--97815388	20	1.9	21	89	5	62	33	0	5	61	1.18
97817356--97817423	31	2.2	30	82	10	84	48	2	1	47	1.26
97834194--97834243	28	1.9	25	84	15	66	62	4	6	28	1.37
97840547--97840658	31	3.3	31	67	20	89	25	14	15	44	1.84
97840519--97840660	71	2.0	71	98	0	275	26	13	15	44	1.83
97856664--97856696	16	2.1	16	100	0	66	30	12	18	39	1.87
97862871--97862945	31	2.4	32	82	8	93	25	16	10	48	1.78
97863411--97863524	58	2.0	58	84	3	149	51	14	8	25	1.70
97864443--97864470	8	3.5	8	100	0	56	78	0	0	21	0.75
97864392--97864453	27	2.4	25	80	17	74	56	3	0	40	1.15
97864399--97864457	27	2.2	27	84	6	75	54	3	0	42	1.17
97869844--97869908	30	2.2	28	86	8	85	27	3	4	64	1.28
97870986--97871019	7	4.9	7	85	0	50	29	0	23	47	1.52
97870989--97871026	14	2.5	15	87	8	51	26	0	23	50	1.50
97871082--97871123	11	3.3	13	80	16	52	23	0	2	73	0.94
97871092--97871126	18	2.0	18	88	5	54	31	0	0	68	0.90
97871265--97871307	20	2.2	19	84	12	52	30	0	2	67	1.03
97872354--97872389	11	3.3	11	85	14	56	80	0	19	0	0.71
97872354--97872388	10	3.3	10	88	11	52	80	0	20	0	0.72
97872963--97873055	39	2.3	40	83	5	125	39	3	6	50	1.44
97873108--97873142	17	2.1	18	89	10	56	57	0	0	42	0.99
97874095--97874171	36	2.1	38	83	9	97	64	2	1	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97874540--97874598	8	6.7	9	76	16	61	33	0	1	64	1.04
97874551--97874583	17	2.0	16	94	5	57	33	0	0	66	0.92
97874547--97874606	27	2.2	27	85	5	77	35	0	1	63	1.05
97884195--97884236	21	2.0	20	82	13	50	30	7	2	59	1.37
97885905--97885953	20	2.5	20	86	6	64	57	6	0	36	1.24
97885905--97885964	21	2.8	21	80	10	68	56	8	0	35	1.29
97889894--97889991	23	4.3	23	90	2	162	31	26	21	20	1.98
97889901--97889989	45	2.0	45	95	0	160	31	26	22	19	1.97
97900516--97900545	12	2.5	12	94	0	51	0	3	6	90	0.56
97900523--97900547	13	1.9	13	100	0	50	0	0	8	92	0.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320