genome.fa.s12.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  199  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66497952--66498052	28	3.6	28	67	25	70	31	0	3	63	1.19
66497990--66498060	19	3.8	19	79	1	72	30	0	2	66	1.06
66497942--66498067	9	13.4	9	72	17	64	30	1	3	65	1.18
66498412--66498475	29	2.1	32	85	8	89	29	1	9	59	1.38
66503296--66503329	3	11.3	3	93	0	59	67	2	0	29	1.05
66503296--66503332	12	3.1	12	96	0	65	67	5	0	27	1.12
66520323--66520409	44	2.0	44	84	4	113	32	25	20	21	1.98
66521334--66521368	8	4.4	8	92	0	61	40	0	0	60	0.97
66521328--66521370	13	3.1	13	81	18	59	39	0	0	60	0.97
66523696--66523871	46	3.8	46	77	14	200	21	20	28	29	1.98
66523693--66523864	93	1.8	93	93	2	301	21	20	29	28	1.98
66526695--66526729	17	1.9	19	88	11	56	37	0	0	62	0.95
66527786--66527814	10	2.7	11	89	10	51	62	0	0	37	0.96
66529463--66529506	21	2.1	22	83	8	56	52	4	6	36	1.49
66530475--66530532	30	1.9	30	100	0	116	50	3	34	12	1.57
66530670--66530774	46	2.3	46	95	3	187	20	3	9	65	1.37
66532913--66533041	46	3.0	43	85	10	156	23	30	24	22	1.99
66533034--66533183	38	3.9	38	92	0	219	29	25	22	22	1.99
66544261--66544301	21	1.9	22	85	5	57	48	0	2	48	1.14
66549214--66549246	16	2.0	17	88	5	50	45	3	15	36	1.61
66549655--66549830	46	3.8	46	79	10	196	19	22	30	27	1.98
66549651--66549823	93	1.9	93	92	0	292	20	22	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66551802--66551837	18	2.0	19	89	10	58	36	27	8	27	1.86
66554728--66554773	20	2.3	20	85	3	58	63	13	0	23	1.30
66565672--66565720	25	2.0	25	84	8	64	59	2	4	34	1.28
66566387--66566430	22	2.0	21	83	12	54	54	0	6	38	1.27
66589790--66589915	46	2.7	46	96	0	225	20	22	27	29	1.98
66590744--66590852	37	2.9	37	95	0	191	26	31	19	22	1.98
66590999--66591336	48	7.1	48	89	3	479	30	26	7	35	1.84
66590999--66591336	143	2.4	142	87	5	468	30	26	7	35	1.84
66601416--66601485	22	2.9	23	80	15	79	15	0	7	77	0.98
66601415--66601486	16	4.5	16	69	17	51	16	0	6	76	0.99
66604921--66604973	24	2.2	24	86	6	72	11	22	13	52	1.71
66604938--66604983	24	1.9	24	86	0	65	13	30	8	47	1.72
66607226--66607320	21	4.3	21	72	17	61	58	1	3	36	1.21
66607237--66607323	46	1.9	44	86	9	122	57	1	3	37	1.23
66607448--66607511	20	3.1	19	78	14	56	70	7	0	21	1.12
66610916--66610975	30	2.0	30	83	6	77	23	38	25	13	1.91
66649820--66650036	45	5.0	45	81	7	243	23	21	28	26	1.99
66649820--66649986	91	1.9	89	88	5	255	22	20	28	28	1.99
66649961--66650036	40	1.9	40	89	5	118	25	23	30	21	1.99
66650508--66650540	16	1.9	18	88	11	52	18	12	18	51	1.76
66652856--66652944	35	2.5	35	87	1	115	12	10	31	46	1.75
66657186--66657249	24	2.6	25	87	4	87	32	31	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66657273--66657322	24	2.1	24	88	0	73	32	30	12	26	1.92
66657278--66657652	94	4.0	94	96	0	680	39	19	10	30	1.85
66657278--66657652	187	2.0	188	95	0	680	39	19	10	30	1.85
66660942--66660980	20	2.0	20	89	0	60	20	30	25	23	1.98
66661575--66661612	19	2.1	19	85	5	51	57	18	2	21	1.52
66663969--66664146	27	6.6	27	85	3	214	26	14	28	30	1.95
66663970--66664125	82	1.9	81	89	3	242	26	14	28	30	1.95
66663966--66664146	82	2.2	81	84	2	238	27	14	27	30	1.95
66679519--66679596	36	2.1	37	88	2	113	26	30	17	24	1.97
66679715--66680196	47	10.1	47	93	2	793	29	30	8	31	1.88
66689900--66689936	20	1.9	18	89	10	56	48	8	5	37	1.56
66690081--66690146	20	3.3	20	82	0	87	22	24	19	33	1.97
66693662--66694071	47	8.6	47	90	5	615	29	29	8	32	1.86
66693662--66694072	96	4.3	96	91	4	638	29	29	8	32	1.86
66697550--66697860	39	8.0	39	93	0	505	24	28	24	22	1.99
66705326--66705406	27	3.0	27	85	0	99	33	19	18	28	1.96
66705389--66705447	26	2.2	27	96	3	111	37	16	11	33	1.86
66705469--66705601	27	4.9	27	78	1	142	40	17	9	32	1.82
66705453--66705648	54	3.6	54	83	6	204	42	18	8	30	1.80
66705416--66705606	81	2.4	81	80	2	215	41	18	9	30	1.82
66705479--66705665	27	6.9	28	77	9	131	40	16	9	33	1.81
66705389--66705678	54	5.4	54	74	8	164	40	18	9	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66705944--66706066	41	3.0	41	92	0	201	21	23	30	25	1.99
66706213--66706403	25	7.6	25	84	0	238	17	14	27	40	1.88
66713427--66713486	27	2.3	26	85	2	75	35	20	23	21	1.96
66713531--66713582	27	2.0	26	84	3	68	34	21	26	17	1.95
66720655--66720718	33	2.0	32	84	3	83	35	18	23	21	1.95
66725042--66725087	20	2.3	20	81	3	58	23	19	28	28	1.98
66733325--66733377	26	2.0	27	85	7	74	24	15	22	37	1.92
66734863--66734944	26	3.2	26	92	0	137	36	23	7	32	1.82
66741486--66741510	12	2.1	12	100	0	50	20	40	24	16	1.91
66742158--66742307	43	3.5	42	79	3	158	33	23	14	28	1.94
66747596--66747630	13	2.7	13	90	0	61	5	28	40	25	1.78
66748607--66748824	40	5.5	40	90	2	316	24	22	27	24	2.00
66751006--66751749	44	16.8	44	72	7	398	33	15	19	31	1.93
66751006--66751749	89	8.4	88	72	8	328	33	15	19	31	1.93
66751065--66751476	215	1.9	215	81	3	499	33	15	19	31	1.93
66760339--66760398	30	2.0	30	90	0	93	38	8	25	28	1.84
66766503--66766935	38	9.9	38	67	24	146	30	22	15	30	1.95
66766552--66766909	95	3.9	95	84	7	466	30	22	15	31	1.95
66766647--66766935	133	2.2	133	91	1	454	30	22	15	31	1.95
66768344--66768400	22	2.5	23	77	11	64	36	22	21	19	1.95
66769855--66769966	41	2.7	42	82	12	149	26	27	19	25	1.99
66782481--66782552	29	2.5	28	86	11	101	27	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66782511--66783012	174	2.9	174	96	0	932	30	14	24	30	1.94
66795488--66795521	13	2.6	13	100	0	68	23	0	5	70	1.09
66798533--66798714	64	2.8	64	80	8	190	23	29	17	29	1.97
66799944--66799977	13	2.6	13	100	0	68	23	0	5	70	1.09
66801393--66801611	47	4.7	47	80	9	211	22	30	19	27	1.98
66801393--66801653	139	1.9	140	83	7	343	22	30	18	27	1.98
66803690--66803929	49	4.8	49	76	10	234	26	19	25	28	1.99
66803804--66803882	26	3.0	26	98	0	149	26	21	26	25	1.99
66803690--66803929	100	2.4	103	80	7	244	26	19	25	28	1.99
66808412--66808698	49	5.8	50	77	3	292	25	17	25	31	1.97
66808406--66808698	100	2.9	100	87	3	428	25	18	24	31	1.98
66815390--66815430	22	1.9	21	85	5	55	21	24	41	12	1.87
66816505--66816767	46	5.6	47	73	14	165	24	28	17	29	1.98
66820656--66820742	42	2.1	42	100	0	174	26	9	22	41	1.84
66842790--66843230	232	1.9	232	94	0	783	22	29	24	23	1.99
66847641--66847786	29	5.0	29	90	0	202	26	12	32	28	1.92
66860078--66860102	13	1.9	13	100	0	50	32	0	16	52	1.44
66860621--66860677	28	2.0	29	82	3	71	47	3	21	28	1.67
66861218--66861348	47	2.8	47	88	0	190	23	16	26	33	1.95
66873806--66873938	45	3.0	45	77	5	112	33	25	17	24	1.96
66874066--66874107	14	2.9	14	85	3	57	42	14	2	40	1.58
66875371--66875484	23	4.8	24	76	12	94	27	20	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66875371--66875542	22	7.3	23	71	15	113	25	20	18	36	1.94
66875406--66875532	45	2.8	45	81	8	132	22	18	19	38	1.93
66877085--66877330	92	2.7	93	88	2	363	31	20	22	25	1.98
66878662--66878708	22	2.1	22	100	0	94	42	17	4	36	1.68
66881883--66881978	41	2.3	43	82	8	117	33	23	16	26	1.96
66883267--66883440	92	1.9	92	90	0	276	35	17	22	24	1.95
66893019--66893287	46	5.7	48	76	10	218	23	30	19	26	1.98
66893019--66893239	47	4.7	46	77	8	171	23	30	19	26	1.98
66893113--66893284	94	1.8	92	85	7	240	23	31	19	25	1.98
66896139--66896167	14	2.1	14	100	0	58	20	31	20	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320