genome.fa.s12.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  102  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32831233--32831269	19	2.0	20	89	10	60	45	0	5	48	1.25
32831234--32831274	18	2.2	19	83	12	50	46	0	4	48	1.23
32832378--32832409	16	2.0	16	100	0	64	18	18	6	56	1.62
32840933--32841012	38	2.1	38	90	0	124	20	22	28	28	1.98
32840984--32841202	43	5.1	43	94	1	361	11	23	34	30	1.91
32842557--32842766	40	5.2	41	90	2	277	26	26	22	24	2.00
32844693--32844772	38	2.1	38	90	0	124	20	22	28	28	1.98
32844744--32844962	43	5.1	43	91	1	334	12	22	33	31	1.91
32845867--32846085	79	2.8	80	79	12	234	27	21	25	26	1.99
32845861--32846085	40	5.7	40	84	7	239	26	21	26	25	1.99
32846023--32846118	40	2.4	40	79	5	97	27	18	28	26	1.98
32845954--32846118	79	2.1	79	80	8	176	26	20	27	26	1.99
32853801--32853970	79	2.2	78	84	9	213	27	21	26	25	1.99
32853750--32853970	39	5.6	39	83	10	197	26	22	26	24	2.00
32853840--32854003	79	2.1	78	81	10	183	26	20	27	25	1.99
32860552--32860576	13	1.9	13	100	0	50	88	4	8	0	0.64
32861656--32861880	79	2.8	80	81	11	264	26	22	26	24	2.00
32861656--32861880	40	5.7	40	87	5	271	26	22	26	24	2.00
32861656--32861880	119	1.9	120	82	9	291	26	22	26	24	2.00
32861663--32861913	79	3.2	78	79	12	244	27	21	26	24	1.99
32863232--32863325	43	2.2	43	92	0	152	12	23	34	29	1.92
32863244--32863338	43	2.2	43	90	0	154	13	23	33	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32867173--32867211	14	2.7	14	85	14	53	82	0	15	2	0.79
32867823--32867865	22	2.0	22	95	0	77	27	13	27	30	1.95
32874465--32874792	48	6.9	48	94	0	550	30	27	7	35	1.83
32878876--32879304	131	3.3	131	90	1	653	37	12	18	31	1.88
32881906--32882036	54	2.4	54	88	0	181	28	25	19	26	1.99
32885373--32885570	43	4.6	43	94	0	360	29	33	26	10	1.90
32885563--32885666	38	2.7	38	83	0	127	30	25	20	23	1.98
32892812--32892881	35	2.0	35	97	0	131	40	4	20	35	1.72
32898091--32898250	79	2.0	79	98	0	311	36	8	23	30	1.85
32898635--32898675	13	3.2	13	80	13	57	53	4	2	39	1.35
32902670--32902781	25	4.5	25	82	2	136	28	19	24	27	1.99
32905693--32905762	6	11.3	6	71	17	54	48	15	17	18	1.81
32905693--32905762	31	2.3	31	87	0	104	48	15	17	18	1.81
32905880--32905939	27	2.3	26	82	2	66	36	18	23	21	1.95
32905980--32906031	27	2.0	26	84	3	68	34	21	26	17	1.95
32906268--32906866	27	22.2	27	84	1	644	41	8	20	29	1.81
32906817--32906933	27	4.3	27	77	10	89	30	9	19	40	1.83
32906844--32907019	54	3.3	53	76	10	160	29	10	21	39	1.86
32906888--32907012	27	4.7	27	77	8	112	28	9	22	40	1.85
32906860--32907012	27	5.7	26	74	9	103	28	10	21	39	1.86
32908577--32908643	24	2.8	23	84	4	80	49	17	22	10	1.77
32908577--32908643	16	4.2	16	68	21	50	49	17	22	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32908864--32908961	29	3.4	29	85	4	128	25	12	32	29	1.92
32913762--32913855	24	3.9	24	83	5	118	36	28	12	22	1.91
32913722--32913855	72	1.9	72	83	0	178	35	26	11	26	1.91
32915107--32915142	15	2.5	14	86	8	54	22	11	0	66	1.22
32916570--32916676	29	3.7	28	85	8	128	27	13	32	27	1.93
32916933--32916987	27	2.1	26	82	3	65	41	21	20	16	1.90
32923131--32923243	25	4.6	25	78	10	117	29	23	21	26	1.99
32923126--32923243	48	2.4	50	78	8	134	30	23	20	25	1.98
32937878--32937944	28	2.4	29	85	9	86	31	14	28	25	1.95
32945574--32945751	27	6.6	27	79	3	178	28	15	26	29	1.96
32945571--32945751	82	2.2	81	80	4	204	28	16	26	29	1.96
32947101--32947222	48	2.5	48	88	2	165	28	19	27	24	1.99
32948837--32948907	24	3.0	24	93	0	115	35	1	36	26	1.66
32950325--32950436	27	4.2	26	78	12	109	16	21	23	38	1.93
32950325--32950436	54	2.1	54	86	3	154	16	21	23	38	1.93
32958045--32958141	30	3.2	30	71	8	90	27	15	28	27	1.96
32962751--32962847	30	3.2	30	71	8	90	27	15	28	27	1.96
32963127--32963173	24	2.0	24	86	0	67	38	2	36	23	1.67
32964591--32964702	27	4.2	26	83	7	134	16	23	23	37	1.93
32964591--32964702	54	2.1	54	88	3	163	16	23	23	37	1.93
32969129--32969634	48	10.6	48	87	0	627	26	16	29	26	1.97
32975456--32975500	17	2.6	17	92	0	72	33	8	11	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32976133--32976193	27	2.3	26	77	5	68	31	18	18	32	1.94
32979862--32980040	43	4.0	44	76	12	168	31	15	22	30	1.95
32979862--32980013	43	3.4	43	83	9	173	30	15	24	30	1.95
32981264--32981298	16	2.1	16	89	5	52	22	8	20	48	1.76
32982096--32982213	43	2.7	43	90	1	182	31	18	25	24	1.98
32984152--32984282	48	2.7	48	83	2	156	29	19	29	22	1.98
32985746--32985825	37	2.2	37	88	0	115	23	31	18	26	1.98
32985943--32986398	47	9.7	47	93	1	702	27	31	9	31	1.88
32989151--32989202	25	2.1	25	85	7	70	30	32	7	28	1.85
32989378--32989720	40	8.6	40	83	3	327	25	27	22	24	2.00
32991576--32991654	37	2.1	37	90	0	122	25	31	18	24	1.98
32991773--32992089	47	6.7	47	93	0	492	27	30	9	32	1.89
32997270--32997335	33	2.0	33	100	0	132	42	27	0	30	1.56
33001614--33001659	23	2.0	23	86	4	65	52	0	2	45	1.13
33017349--33017428	27	2.9	27	86	5	106	22	25	21	31	1.98
33017892--33017930	19	2.1	19	85	0	51	15	5	7	71	1.26
33020326--33020408	43	2.0	43	88	7	125	24	14	25	36	1.93
33020330--33020419	43	2.1	42	82	10	103	25	15	26	32	1.96
33021194--33021236	23	1.9	23	85	4	61	25	4	25	44	1.73
33023319--33023343	12	2.1	12	100	0	50	36	0	16	48	1.46
33026313--33026375	31	2.0	31	87	0	90	23	23	15	36	1.94
33026584--33026667	26	3.4	25	86	6	100	28	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33034203--33034286	26	3.4	25	90	6	118	27	22	22	27	1.99
33040459--33040654	40	4.9	40	91	1	297	27	27	22	22	1.99
33043091--33043136	23	2.0	23	84	12	60	45	10	6	36	1.65
33043098--33043142	23	2.0	23	82	8	56	40	13	8	37	1.76
33058623--33058692	25	2.8	25	91	4	106	24	24	25	25	2.00
33058897--33059055	27	5.9	27	85	2	212	25	21	17	35	1.95
33058897--33059057	81	2.0	81	90	2	252	25	21	18	35	1.95
33059047--33059186	27	5.2	27	76	7	133	29	8	21	40	1.83
33059137--33059388	54	4.7	54	81	3	184	36	7	22	32	1.83
33059138--33059375	81	2.9	81	85	3	255	37	7	22	31	1.83
33059165--33059375	27	7.8	27	86	6	275	38	7	23	30	1.83
33059101--33059400	27	11.1	27	82	5	158	34	7	23	34	1.84
33059165--33059400	54	4.4	54	82	6	253	37	7	23	31	1.83
33059123--33059400	81	3.4	81	76	8	242	35	7	23	32	1.84
33061804--33061873	25	2.8	25	84	0	95	25	22	24	27	2.00
33062076--33062236	27	6.0	27	81	2	180	24	19	19	36	1.95
33062075--33062246	54	3.2	53	81	4	202	24	19	19	37	1.94
33062075--33062237	81	2.0	81	84	0	209	23	19	20	36	1.95
33062279--33062423	27	5.4	27	86	3	202	27	8	24	39	1.85
33062279--33062431	81	1.9	81	87	2	227	28	9	23	39	1.85
33062281--33062458	54	3.3	53	85	3	196	29	8	23	38	1.85
33062362--33062499	27	5.1	26	82	7	109	32	7	23	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33062281--33062474	81	2.4	80	82	5	219	29	9	23	37	1.86
33062383--33062636	81	3.1	81	81	4	246	38	8	20	31	1.83
33062426--33062663	81	2.9	80	84	2	296	39	8	20	31	1.82
33062426--33062636	27	7.8	27	90	0	296	40	8	20	30	1.82
33062453--33062663	54	3.9	54	85	0	242	40	8	19	31	1.82
33065043--33065120	25	3.2	25	85	3	97	26	17	21	33	1.96
33065050--33065119	25	2.8	25	89	2	106	25	20	24	30	1.99
33065322--33065455	27	5.0	27	88	0	196	24	21	19	34	1.96
33065447--33065643	27	7.3	26	78	7	162	30	8	21	39	1.83
33065460--33065651	81	2.4	81	80	6	201	31	9	20	39	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320