genome.fa.s12.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  145  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47503378--47503536	43	3.7	43	78	4	178	23	18	27	30	1.97
47514476--47514531	24	2.3	25	81	6	71	66	7	0	26	1.18
47514488--47514552	25	2.9	23	80	15	66	64	6	0	29	1.17
47514514--47514552	19	2.0	20	90	5	62	69	5	0	25	1.09
47514498--47514556	23	2.7	23	77	20	72	67	6	0	25	1.15
47515730--47515898	58	2.9	58	93	1	295	37	11	27	22	1.89
47515726--47515892	29	5.8	29	86	1	237	38	11	28	22	1.88
47518387--47518427	20	2.0	20	90	0	64	39	12	2	46	1.54
47522564--47522754	43	4.5	42	77	12	176	32	25	15	26	1.96
47522564--47522761	86	2.3	86	81	6	224	32	25	15	26	1.96
47544683--47544758	6	12.8	6	78	10	61	18	2	1	77	0.95
47544683--47544758	10	7.0	11	79	14	70	18	2	1	77	0.95
47544685--47544758	15	5.3	15	80	16	63	17	2	1	78	0.94
47544685--47544759	27	2.9	26	82	13	84	17	4	1	77	0.99
47546174--47546203	15	2.0	15	93	0	51	50	0	10	40	1.36
47546170--47546232	27	2.3	26	76	10	63	38	0	11	50	1.38
47556640--47556692	18	2.8	18	75	18	54	60	1	7	30	1.35
47567921--47568070	55	2.8	54	80	4	149	26	15	29	28	1.96
47567893--47568070	27	6.6	27	77	6	146	25	15	28	30	1.96
47567894--47568049	82	1.9	81	81	6	190	25	16	28	30	1.96
47585590--47585635	10	4.7	10	76	15	51	86	2	10	0	0.64
47585596--47585637	14	3.1	14	86	13	61	88	0	11	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47585590--47585635	20	2.4	19	88	3	65	86	2	10	0	0.64
47596919--47597044	39	3.2	39	91	0	198	21	19	30	28	1.98
47596919--47597078	78	2.1	78	83	4	198	21	20	29	28	1.98
47602652--47602829	27	6.6	27	84	3	205	29	28	15	26	1.96
47602673--47602828	82	1.9	81	88	3	233	29	28	15	26	1.96
47622970--47623056	34	2.6	34	83	3	95	26	26	24	22	2.00
47626020--47626191	43	4.0	43	76	11	156	23	17	27	31	1.97
47629776--47629832	29	2.0	29	93	3	98	31	26	22	19	1.98
47631745--47632267	47	11.1	47	93	0	749	31	9	30	27	1.89
47632386--47632464	37	2.1	37	90	0	122	24	18	31	25	1.98
47635259--47635318	27	2.3	26	85	2	75	35	20	23	21	1.96
47645364--47645449	27	3.2	26	87	8	118	39	23	23	13	1.90
47650624--47650708	27	3.2	26	86	6	107	35	24	24	15	1.94
47656979--47657088	44	2.5	45	89	2	170	30	15	28	25	1.96
47659931--47660155	40	5.7	40	83	7	271	24	21	28	25	1.99
47659984--47660191	80	2.6	79	84	7	237	25	20	27	26	1.99
47666392--47666429	19	2.0	19	90	10	60	21	7	0	71	1.11
47671146--47671370	40	5.7	40	82	6	228	24	22	28	24	1.99
47679275--47679498	40	5.6	40	84	7	242	24	22	28	25	2.00
47679274--47679517	80	3.1	80	80	8	275	24	22	27	25	2.00
47679281--47679505	119	1.9	119	82	6	276	25	21	27	25	1.99
47679285--47679531	119	2.1	119	79	7	261	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47701758--47701802	15	3.0	15	86	0	72	24	4	22	48	1.68
47706923--47707048	46	2.7	46	91	4	193	21	19	27	30	1.98
47714460--47714624	46	3.6	47	76	16	191	22	18	28	30	1.97
47714506--47714671	47	3.6	47	76	16	200	22	18	28	30	1.97
47714454--47714717	93	2.8	92	91	2	420	23	20	28	28	1.98
47716730--47716929	48	4.2	48	80	6	183	31	26	15	27	1.95
47716730--47716981	96	2.6	96	78	6	251	30	26	16	26	1.97
47728758--47728925	77	2.2	78	86	7	227	23	22	29	25	1.99
47728706--47728925	39	5.6	39	81	11	211	24	22	28	24	1.99
47728705--47728958	117	2.2	117	80	9	268	25	22	27	24	1.99
47736820--47737043	40	5.6	40	84	7	242	24	22	28	25	2.00
47736819--47737062	80	3.1	80	80	8	275	24	22	27	25	2.00
47736826--47737050	119	1.9	119	82	6	276	25	21	27	25	1.99
47736830--47737076	119	2.1	119	79	7	261	25	21	27	25	2.00
47744005--47744113	42	2.6	42	82	8	132	28	15	23	32	1.95
47744458--47744507	17	2.7	19	78	12	59	54	6	0	40	1.25
47752763--47752808	17	2.5	19	82	13	60	58	6	0	34	1.24
47755767--47755989	40	5.6	40	85	3	227	24	20	27	26	1.99
47766614--47766769	85	1.8	84	84	4	215	28	28	21	22	1.99
47766642--47766769	28	4.5	28	82	5	150	28	27	21	21	1.99
47766801--47767055	40	6.4	40	93	0	438	29	27	18	24	1.98
47773117--47773994	435	2.0	436	87	2	1244	36	16	12	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47775968--47776049	23	3.6	23	80	15	107	35	19	23	21	1.96
47775966--47776059	46	2.1	46	92	6	156	34	19	24	22	1.97
47775966--47776059	45	2.1	45	92	6	154	34	19	24	22	1.97
47781985--47782048	23	3.0	22	78	15	62	25	7	1	65	1.28
47789520--47789583	31	2.1	31	90	0	101	25	23	15	35	1.94
47789777--47789942	24	7.0	24	88	4	239	27	21	22	29	1.99
47789776--47789942	47	3.5	48	89	4	241	26	20	22	29	1.98
47789777--47789942	71	2.3	71	91	3	262	27	21	22	29	1.99
47789992--47790058	20	3.3	20	89	0	98	32	20	13	32	1.92
47791281--47791360	27	3.0	27	87	3	108	21	26	21	31	1.98
47791426--47791511	27	3.1	27	79	14	86	37	10	13	38	1.80
47791509--47791671	27	6.0	27	77	8	161	31	9	19	39	1.84
47791516--47791693	54	3.3	54	82	5	184	29	8	19	41	1.82
47791514--47791679	81	2.0	81	90	2	262	30	9	21	38	1.85
47791686--47791915	27	8.5	27	90	0	280	37	8	24	29	1.85
47791514--47791733	81	2.7	81	83	4	196	32	9	20	38	1.84
47791929--47792018	27	3.3	27	85	3	119	32	11	16	40	1.84
47791929--47792033	27	3.9	27	78	9	90	34	10	17	38	1.84
47807411--47807470	30	2.0	30	86	0	84	28	26	5	40	1.77
47816921--47816954	15	2.2	16	89	5	52	32	50	0	17	1.47
47826900--47826971	37	1.9	37	100	0	144	33	16	13	36	1.89
47828390--47828430	13	3.4	12	81	18	50	0	26	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47828495--47828552	17	3.3	18	73	9	57	51	6	0	41	1.28
47828977--47829016	21	2.0	20	85	5	53	37	7	10	45	1.66
47831896--47831938	20	2.2	20	91	0	68	25	30	23	20	1.99
47840010--47840055	23	2.0	23	83	12	58	13	19	26	41	1.88
47842271--47842385	43	2.7	43	83	4	135	33	24	16	26	1.96
47843822--47843855	16	2.1	16	89	10	52	41	0	11	47	1.40
47851967--47852023	26	2.2	26	80	3	60	28	19	19	33	1.96
47855504--47855631	63	2.0	63	98	0	247	29	18	30	21	1.97
47859846--47859952	44	2.5	44	86	7	139	22	18	24	34	1.96
47859855--47859995	43	3.3	42	80	11	135	24	19	24	32	1.97
47860200--47860237	17	2.2	17	95	0	67	42	2	23	31	1.68
47871291--47871346	26	2.2	26	100	0	112	26	0	16	57	1.39
47881973--47882196	104	2.2	104	92	1	369	18	18	31	31	1.95
47882115--47882266	71	2.1	72	92	1	252	23	17	29	30	1.97
47883959--47884136	27	6.6	27	78	6	146	29	28	15	26	1.96
47883959--47884136	54	3.3	54	78	7	164	29	28	15	26	1.96
47897016--47897056	19	2.3	19	87	8	59	29	0	17	53	1.44
47901139--47901543	47	8.6	47	93	0	666	32	8	30	28	1.88
47903013--47903086	29	2.6	29	86	4	96	25	17	31	25	1.97
47903393--47903668	40	6.9	40	80	3	245	24	22	28	24	2.00
47907752--47907968	47	4.6	47	92	1	335	32	8	30	28	1.87
47909974--47910132	42	3.6	42	69	9	120	30	28	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47909937--47910100	90	1.8	90	85	2	231	29	28	17	25	1.98
47910109--47910232	48	2.6	49	82	10	148	33	28	14	24	1.94
47910162--47910276	48	2.4	48	83	2	133	31	27	13	27	1.93
47920422--47920574	42	3.5	42	72	15	130	24	26	19	28	1.99
47920678--47920759	41	2.0	41	97	0	155	24	28	19	28	1.99
47923964--47924001	20	1.9	20	88	0	58	34	2	15	47	1.60
47949435--47949699	43	6.2	43	90	0	404	12	22	32	32	1.91
47949807--47949905	29	3.4	29	70	10	94	23	20	26	30	1.98
47949836--47949990	29	5.4	29	70	11	113	21	18	31	28	1.97
47949804--47949972	58	2.9	58	93	0	286	22	18	29	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320