genome.fa.s12.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  146  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47952952--47953127	46	3.8	46	78	10	196	21	20	28	30	1.98
47952949--47953118	93	1.8	93	93	0	295	21	21	28	28	1.99
47958031--47958333	52	5.9	52	87	7	469	26	9	31	32	1.88
47958159--47958472	46	6.5	47	80	9	212	28	14	29	28	1.95
47958031--47958333	98	3.0	99	84	9	369	26	9	31	32	1.88
47958055--47958379	150	2.2	150	100	0	650	26	11	31	30	1.91
47958159--47958430	52	5.6	46	82	10	194	27	13	29	29	1.95
47958055--47958427	150	2.5	149	93	1	563	27	12	30	30	1.92
47958309--47958520	94	2.3	94	81	3	239	29	17	27	25	1.98
47962209--47962287	37	2.1	37	86	4	106	26	30	17	25	1.97
47962406--47962710	47	6.5	47	93	0	484	28	30	8	32	1.87
47962684--47962736	26	2.0	26	96	0	97	32	28	7	32	1.85
47962590--47962832	120	2.0	121	95	1	434	30	28	8	32	1.86
47962637--47962783	73	2.0	73	95	0	267	31	29	8	31	1.86
47962543--47962875	167	2.0	169	95	1	607	30	28	8	32	1.87
47962710--47962875	47	3.5	47	96	3	314	30	28	8	31	1.87
47966413--47966682	80	3.4	80	84	4	323	24	26	22	26	2.00
47966413--47966603	40	4.8	40	93	0	312	24	26	23	26	2.00
47966413--47966682	120	2.3	121	82	5	309	24	26	22	26	2.00
47966990--47967068	29	2.7	29	86	5	106	27	32	15	24	1.95
47967050--47967152	43	2.4	43	100	0	206	26	35	15	22	1.94
47969019--47969097	37	2.1	37	86	4	106	26	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47969218--47969426	47	4.4	47	88	2	285	28	31	9	31	1.88
47969400--47969452	26	2.0	26	96	0	97	32	28	7	32	1.85
47969353--47969501	73	2.0	74	93	2	255	30	30	8	30	1.86
47969306--47969541	120	2.0	121	94	1	420	30	29	8	31	1.87
47969426--47969540	49	2.4	49	97	2	216	31	27	8	32	1.87
47976611--47976816	46	4.4	46	75	9	141	29	19	27	24	1.98
47979616--47979797	79	2.3	81	82	7	212	24	21	28	24	1.99
47979616--47979797	40	4.6	40	81	6	210	24	21	28	24	1.99
47979666--47979830	79	2.1	79	82	6	192	26	21	27	24	1.99
47987665--47987845	79	2.3	81	82	7	219	25	22	27	24	2.00
47987665--47987845	40	4.6	40	81	9	201	25	22	27	24	2.00
47987714--47987878	79	2.1	79	83	6	201	26	21	27	24	1.99
48008020--48008060	21	1.9	22	85	5	57	31	24	4	39	1.76
48008467--48008548	28	2.9	28	90	0	128	28	26	12	32	1.92
48010835--48010905	29	2.4	29	88	4	99	26	30	15	26	1.96
48018815--48018897	39	2.1	39	100	0	166	21	28	21	27	1.99
48018966--48019044	29	2.7	29	86	5	106	27	32	15	24	1.95
48020452--48020629	27	6.6	26	83	6	178	26	15	28	29	1.96
48020453--48020608	82	1.9	81	88	3	233	26	15	28	29	1.96
48020449--48020629	82	2.2	81	83	2	229	26	15	28	29	1.96
48027659--48027836	27	6.6	26	83	6	178	26	15	28	29	1.96
48027660--48027815	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48027656--48027836	82	2.2	81	83	2	229	26	15	28	29	1.96
48039282--48039321	21	2.0	19	90	9	62	30	0	20	50	1.49
48041030--48041097	29	2.5	27	79	11	68	29	23	11	35	1.90
48041173--48041209	19	1.9	19	88	0	56	16	37	18	27	1.92
48062128--48062460	39	8.4	40	86	2	379	21	22	27	28	1.99
48062159--48062472	79	4.0	79	89	1	443	20	22	28	28	1.98
48062128--48062472	118	2.9	117	84	4	370	20	22	27	28	1.99
48083832--48084269	44	9.9	44	72	11	241	29	26	15	28	1.96
48084042--48084361	87	3.7	85	73	12	308	29	25	15	29	1.96
48083997--48084328	176	1.9	176	93	0	574	29	26	15	27	1.96
48083987--48084356	176	2.1	175	89	3	571	30	26	15	27	1.96
48108658--48108902	49	4.9	49	81	3	283	27	27	19	25	1.99
48108671--48108902	100	2.3	98	83	2	293	28	27	18	25	1.98
48118650--48118674	8	3.1	8	100	0	50	24	40	12	24	1.88
48126427--48126611	40	4.7	40	80	7	200	24	22	27	25	2.00
48126431--48126609	79	2.2	81	83	7	224	25	22	26	25	2.00
48126428--48126644	79	2.7	79	76	11	214	26	22	26	25	2.00
48128659--48128695	19	1.9	19	94	0	65	21	27	40	10	1.86
48137420--48137607	27	6.9	28	77	6	217	28	22	9	39	1.85
48137419--48137607	54	3.5	54	85	0	270	28	22	9	39	1.86
48137617--48137812	27	7.3	27	85	0	212	37	19	17	25	1.94
48137617--48137812	54	3.6	54	85	2	241	37	19	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48138011--48138093	27	3.1	26	86	5	103	20	21	20	37	1.95
48138181--48138239	22	2.7	22	81	0	64	20	25	22	32	1.98
48138404--48138477	27	2.8	27	85	6	89	20	24	20	35	1.96
48138595--48138757	6	26.8	6	75	18	142	20	17	13	48	1.80
48138595--48138757	61	2.7	60	93	0	263	20	17	13	48	1.80
48139635--48139666	16	2.0	16	100	0	64	37	6	18	37	1.76
48140985--48141117	27	4.9	27	73	0	95	38	23	9	28	1.86
48141104--48141430	27	12.1	27	88	0	431	35	19	20	24	1.96
48141633--48141702	25	2.8	25	91	0	104	27	22	22	27	1.99
48141658--48141729	25	3.0	24	78	13	67	29	20	22	27	1.99
48144721--48144818	27	3.5	28	90	2	135	26	13	28	31	1.94
48144749--48144831	27	3.0	27	87	5	96	30	12	25	32	1.92
48150184--48150478	47	6.2	47	86	3	401	29	30	8	31	1.86
48150184--48150478	96	3.1	96	90	0	441	29	30	8	31	1.86
48165201--48165301	25	4.1	25	74	11	75	27	21	19	30	1.98
48165285--48165352	25	2.7	25	74	0	73	32	23	16	27	1.96
48166190--48166238	24	2.0	24	100	0	98	46	12	8	32	1.71
48166486--48166515	16	1.9	16	93	6	53	30	0	20	50	1.49
48166921--48167155	116	2.0	116	98	0	452	26	5	26	41	1.76
48169401--48169470	34	2.1	34	100	0	140	27	25	17	30	1.97
48172999--48173129	40	3.3	40	88	2	192	23	21	27	27	1.99
48172999--48173166	40	4.2	38	80	9	158	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48180866--48181049	40	4.6	40	82	6	196	23	21	27	27	1.99
48183532--48183690	43	3.7	43	77	9	162	31	22	15	30	1.95
48187878--48187923	23	2.0	23	83	8	58	50	21	0	28	1.49
48203386--48203588	53	3.8	53	76	3	199	20	23	18	37	1.94
48205914--48205964	20	2.5	20	81	15	61	7	19	23	49	1.74
48213437--48213567	66	1.9	69	80	9	151	32	15	31	20	1.94
48234543--48234720	27	6.6	27	78	6	146	29	28	15	26	1.96
48234543--48234720	54	3.3	54	78	7	164	29	28	15	26	1.96
48243303--48243526	104	2.2	104	92	1	369	18	18	31	31	1.95
48243445--48243596	71	2.1	72	92	1	252	23	17	29	30	1.97
48248288--48248408	27	4.5	27	87	4	154	26	19	9	44	1.80
48248261--48248389	54	2.4	54	81	2	134	30	21	9	38	1.85
48248315--48248445	54	2.4	54	81	0	154	31	19	8	41	1.81
48248396--48248665	27	10.0	27	81	6	219	41	18	8	32	1.80
48248410--48248674	137	2.0	134	80	10	299	41	18	8	31	1.81
48248696--48248747	27	1.9	27	84	7	70	38	23	21	17	1.93
48249928--48249975	25	1.9	25	91	0	78	37	22	12	27	1.90
48250012--48250078	20	3.3	20	91	0	107	32	11	22	32	1.90
48250129--48250269	23	6.1	23	91	3	230	24	20	24	30	1.99
48250129--48250269	45	3.1	46	92	3	230	24	20	24	30	1.99
48250129--48250269	68	2.0	70	91	2	232	24	20	24	30	1.99
48250484--48250547	31	2.1	31	87	0	92	40	15	21	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48254993--48255056	31	2.1	31	96	0	119	34	6	23	35	1.80
48270890--48271060	93	1.8	92	90	3	272	28	28	21	22	1.99
48270883--48271056	46	3.8	46	76	14	178	28	28	20	21	1.98
48274371--48274541	93	1.8	93	93	2	299	29	28	20	21	1.98
48274363--48274538	46	3.8	46	77	14	200	30	28	19	21	1.98
48281948--48282119	46	3.7	46	77	13	181	29	28	20	21	1.98
48281956--48282126	93	1.8	93	89	0	270	28	28	21	21	1.99
48281999--48282142	46	3.1	44	73	15	114	29	27	20	22	1.99
48282546--48282605	30	2.0	30	86	0	84	31	25	5	38	1.77
48283728--48283837	27	4.1	27	85	2	125	47	20	12	19	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320