genome.fa.s12.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  163  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53695267--53695356	27	3.2	27	81	7	101	32	24	24	18	1.97
53695461--53695524	27	2.3	28	86	2	85	29	9	28	32	1.88
53695477--53695532	28	2.0	27	82	3	67	30	10	23	35	1.89
53696586--53696618	12	2.6	13	85	9	50	45	0	45	9	1.35
53700878--53700921	22	2.0	22	82	8	54	40	22	0	36	1.54
53704821--53704964	48	3.0	48	86	0	207	23	17	30	28	1.97
53704827--53704997	48	3.6	48	77	12	145	25	17	29	27	1.98
53711754--53711972	38	5.8	38	93	1	350	20	21	26	30	1.98
53711754--53711972	75	2.9	76	90	1	350	20	21	26	30	1.98
53711754--53711972	113	1.9	114	90	0	350	20	21	26	30	1.98
53711965--53712116	43	3.6	43	86	5	220	14	24	30	30	1.95
53713392--53713495	48	2.2	48	81	6	113	29	22	29	18	1.97
53716981--53717201	38	5.8	38	90	1	327	19	22	27	30	1.98
53716981--53717201	113	1.9	114	88	0	336	19	22	27	30	1.98
53716981--53717201	75	2.9	76	89	1	327	19	22	27	30	1.98
53718843--53718987	38	3.8	38	89	1	220	20	22	26	29	1.99
53718980--53719134	43	3.6	43	93	0	265	11	25	32	30	1.91
53723433--53723768	48	7.0	48	87	1	476	25	16	29	28	1.97
53729906--53729987	24	3.4	24	83	5	103	29	18	21	30	1.97
53733342--53733420	37	2.1	37	88	4	115	25	30	18	25	1.98
53733539--53733889	47	7.5	47	94	0	549	28	30	9	31	1.88
53736344--53736521	27	6.6	27	81	5	171	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53736365--53736520	82	1.9	81	86	3	224	28	28	16	26	1.97
53748013--53748059	20	2.3	20	92	7	78	38	10	17	34	1.84
53748109--53748211	26	4.1	25	87	7	140	28	20	21	30	1.98
53758201--53758338	42	3.2	43	77	6	138	23	16	26	32	1.96
53764963--53765051	42	2.1	42	95	0	160	51	14	5	28	1.65
53764964--53765073	42	2.6	42	85	7	107	51	13	5	29	1.63
53769676--53769761	42	2.0	42	93	4	147	50	13	4	31	1.63
53769786--53769825	19	2.2	18	95	4	71	42	15	2	40	1.60
53771285--53771548	42	6.4	42	89	3	383	17	17	25	40	1.90
53771282--53771531	125	2.0	125	92	3	423	17	16	25	40	1.90
53775912--53776089	27	6.6	27	85	3	214	30	28	14	26	1.95
53775933--53776088	82	1.9	81	89	3	242	30	28	14	26	1.95
53782035--53782194	24	6.7	24	92	0	257	39	28	13	18	1.88
53789720--53789784	28	2.3	28	91	0	103	32	27	7	32	1.85
53789890--53789952	28	2.2	29	88	8	94	22	22	23	31	1.98
53789900--53789963	28	2.2	28	86	2	83	25	25	18	31	1.98
53792604--53792763	24	6.7	24	91	0	239	40	28	12	18	1.87
53809908--53809939	16	2.0	16	93	0	55	56	34	0	9	1.32
53812305--53812547	38	5.9	38	74	17	200	27	13	26	32	1.94
53812339--53812502	47	3.7	46	75	17	184	27	13	25	33	1.93
53812305--53812540	85	2.8	85	93	0	409	27	13	26	32	1.94
53814725--53814842	29	4.1	29	83	4	125	29	12	29	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53817491--53817574	28	3.0	28	82	6	98	27	11	32	28	1.92
53819259--53819370	27	4.2	26	86	5	143	35	23	25	15	1.94
53819259--53819370	54	2.1	53	88	1	161	35	23	25	15	1.94
53820773--53820849	24	3.2	24	90	0	118	22	40	2	35	1.68
53823259--53823439	40	4.6	40	88	2	258	25	25	23	25	2.00
53835962--53836015	20	2.7	20	76	0	63	46	24	22	7	1.77
53838629--53838676	24	2.0	25	83	4	62	16	18	20	43	1.88
53843523--53843561	12	3.3	12	82	3	53	17	0	0	82	0.68
53843553--53843754	96	2.1	97	89	4	309	30	24	15	30	1.95
53845761--53845795	16	2.2	16	94	0	61	42	17	25	14	1.86
53846012--53846114	28	3.7	28	88	0	161	23	14	32	30	1.94
53853693--53853727	16	2.2	16	89	0	52	51	20	20	8	1.73
53854867--53854897	16	1.9	16	93	0	53	48	9	25	16	1.76
53855117--53855219	28	3.7	27	83	5	134	23	16	32	28	1.96
53856475--53856508	18	1.9	18	88	5	52	41	11	17	29	1.85
53856928--53857005	25	3.0	28	82	12	89	73	0	6	20	1.05
53856935--53857004	16	4.4	15	74	15	52	74	0	5	20	1.02
53860651--53860710	20	3.0	20	80	9	70	65	1	6	26	1.27
53860651--53860700	10	5.0	10	80	9	57	66	2	6	26	1.26
53864037--53864106	20	3.6	19	81	14	72	61	7	0	31	1.23
53864037--53864106	19	3.5	20	83	14	76	61	7	0	31	1.23
53864057--53864120	19	3.3	19	80	4	65	60	6	0	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53864038--53864119	38	2.1	39	80	13	89	59	7	0	32	1.25
53868991--53869051	29	2.1	30	81	9	72	19	9	4	65	1.40
53870796--53870831	16	2.2	16	100	0	72	19	11	27	41	1.85
53875965--53876059	39	2.4	39	91	0	145	31	15	34	17	1.92
53875965--53876037	20	3.8	20	71	12	62	32	17	34	15	1.91
53875974--53876037	19	3.3	19	68	12	58	32	18	35	12	1.89
53879652--53879753	23	4.4	23	79	8	109	22	23	18	35	1.96
53887537--53887680	43	3.3	43	88	0	207	33	18	14	33	1.91
53891342--53891603	40	6.8	40	87	7	364	23	22	27	25	2.00
53891450--53891513	32	2.0	32	96	0	119	25	23	25	26	2.00
53891410--53891615	72	2.8	72	87	8	272	24	22	26	26	2.00
53891373--53891593	112	2.0	112	92	3	374	24	23	25	26	2.00
53899785--53899881	27	3.6	27	91	0	131	39	23	17	19	1.92
53899804--53899899	27	3.6	26	83	5	102	40	17	19	21	1.91
53899890--53900076	27	6.9	27	80	9	193	29	13	16	40	1.86
53899890--53900106	54	4.0	53	81	5	229	29	13	17	40	1.88
53899863--53900032	81	2.1	81	81	2	189	34	13	15	36	1.87
53899891--53900076	81	2.3	81	84	2	232	30	13	16	40	1.86
53899889--53900103	27	8.0	27	79	9	163	28	13	17	40	1.88
53899891--53900106	81	2.7	81	81	3	222	29	13	17	39	1.88
53900437--53900475	18	2.2	18	90	0	60	23	25	12	38	1.90
53902578--53902614	19	2.0	18	89	5	56	13	13	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53903485--53903649	27	6.1	27	84	0	186	44	23	13	18	1.85
53903493--53903661	81	2.1	81	84	2	214	44	23	13	18	1.85
53903664--53903698	16	2.2	16	94	0	61	37	5	28	28	1.80
53903685--53903900	27	8.0	27	76	5	204	26	14	18	40	1.89
53904663--53904971	154	2.0	154	92	0	519	37	13	15	34	1.86
53907987--53908025	18	2.1	19	85	4	53	7	23	2	66	1.30
53908042--53908091	18	2.8	18	87	0	73	14	28	0	58	1.37
53908095--53908191	42	2.3	42	89	1	142	15	23	4	56	1.56
53910622--53910675	20	2.7	19	75	11	54	27	20	31	20	1.97
53913143--53913283	27	5.2	27	90	1	203	40	17	19	23	1.91
53913295--53913471	27	6.6	27	78	7	180	27	14	16	40	1.88
53913292--53913511	81	2.7	80	81	5	262	27	14	17	40	1.88
53913831--53913867	18	2.1	18	89	0	56	21	24	13	40	1.89
53916575--53916690	23	4.9	23	80	13	121	21	22	20	35	1.96
53916575--53916689	47	2.4	49	81	13	141	21	22	20	34	1.97
53925314--53925366	24	2.2	24	93	0	88	32	1	43	22	1.64
53926760--53926870	54	2.1	53	87	1	159	17	24	22	36	1.95
53926760--53926870	27	4.2	26	84	7	134	17	24	22	36	1.95
53928880--53928973	28	3.3	29	79	2	93	23	13	32	29	1.93
53932302--53932350	24	2.0	24	100	0	98	42	4	8	44	1.53
53935548--53935629	21	3.9	21	79	6	103	41	15	26	15	1.88
53935545--53935629	42	2.0	42	86	4	118	42	15	25	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53938801--53938827	13	2.1	13	100	0	54	14	37	33	14	1.88
53956336--53956513	27	6.6	27	79	3	151	27	29	15	27	1.96
53956362--53956512	82	1.9	81	85	4	214	27	29	16	27	1.97
53964310--53964486	27	6.6	27	79	5	151	27	29	15	27	1.96
53964310--53964486	54	3.3	54	80	5	205	27	29	15	27	1.96
53964336--53964485	81	1.9	81	85	5	214	27	29	16	26	1.97
53972273--53972449	27	6.6	27	81	4	169	28	29	15	26	1.96
53972294--53972448	82	1.9	80	85	5	213	27	29	16	26	1.97
53972273--53972448	54	3.3	53	81	8	194	28	29	15	26	1.96
53980223--53980371	27	5.5	27	79	3	138	28	29	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320