genome.fa.s12.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  162  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53373866--53374043	27	6.6	27	78	6	153	29	29	16	25	1.97
53382075--53382252	27	6.6	27	83	3	178	29	27	15	27	1.96
53382096--53382251	82	1.9	81	86	3	224	29	27	15	27	1.96
53382075--53382251	54	3.3	54	81	6	196	29	27	15	27	1.96
53383754--53383799	24	2.0	24	83	12	60	13	17	0	69	1.19
53403771--53403835	6	10.7	6	81	15	80	47	16	18	16	1.83
53403785--53403864	31	2.6	31	88	4	108	48	16	17	17	1.81
53404247--53404355	54	2.0	54	82	3	130	29	21	19	30	1.97
53404258--53404399	27	5.3	27	86	0	185	26	19	19	34	1.96
53404258--53404426	54	3.1	55	80	9	154	27	17	19	35	1.94
53404257--53404426	81	2.1	81	81	4	209	27	17	19	35	1.94
53404411--53404695	27	10.9	27	74	6	181	31	6	21	39	1.79
53405432--53405470	20	2.0	20	85	10	53	35	17	0	46	1.49
53412472--53412553	43	1.9	43	87	0	119	28	30	19	21	1.98
53414672--53414853	72	2.5	72	82	3	206	30	28	17	23	1.97
53415539--53415577	20	2.0	20	85	10	53	35	20	0	43	1.52
53425073--53425134	26	2.3	27	83	10	83	35	27	8	29	1.85
53425240--53425352	27	4.2	27	90	3	167	18	24	22	34	1.96
53425239--53425348	55	2.0	54	91	5	177	19	24	20	35	1.96
53426427--53426456	10	3.1	10	95	4	53	33	6	10	50	1.62
53431898--53432128	40	5.8	40	89	1	347	28	28	21	22	1.99
53431898--53432128	119	1.9	120	90	0	365	28	28	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53431898--53432127	79	2.9	79	89	1	334	28	28	20	22	1.99
53448058--53448134	6	12.5	6	71	15	59	46	14	19	19	1.83
53448058--53448134	31	2.5	31	84	0	109	46	14	19	19	1.83
53448270--53448364	27	3.6	25	83	11	100	37	18	24	18	1.94
53449019--53449285	27	10.0	27	85	1	340	25	19	19	35	1.95
53449019--53449293	80	3.4	81	86	2	376	25	18	19	36	1.95
53449117--53449335	107	2.0	107	80	5	237	28	15	19	36	1.92
53449302--53449733	27	16.0	27	82	4	514	40	10	21	27	1.86
53458645--53458774	27	4.8	27	86	0	170	30	23	8	37	1.85
53458645--53458774	54	2.4	54	86	0	188	30	23	8	37	1.85
53458753--53458838	27	3.2	27	83	3	102	38	25	8	27	1.84
53458672--53458803	54	2.4	54	78	0	129	33	23	7	35	1.83
53458600--53458811	81	2.6	81	74	0	217	34	22	7	34	1.83
53458765--53458841	27	2.9	27	88	0	109	40	24	9	25	1.85
53458821--53459180	27	13.3	27	84	0	461	35	19	18	26	1.95
53458821--53459180	108	3.3	108	88	0	524	35	19	18	26	1.95
53459470--53459510	20	2.0	20	85	0	55	12	17	29	41	1.85
53459527--53459585	22	2.7	22	81	0	64	20	25	22	32	1.98
53459742--53459844	27	3.8	26	82	5	116	22	21	19	36	1.95
53459992--53460049	19	3.4	19	65	30	58	18	17	17	46	1.84
53459981--53460100	6	19.3	6	69	19	77	20	17	15	47	1.83
53459981--53460116	31	4.4	31	85	3	159	19	16	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53463314--53463538	40	5.6	40	81	2	254	24	26	23	25	2.00
53463278--53463538	80	3.3	78	80	5	274	24	26	22	26	2.00
53466708--53466879	93	1.8	93	91	0	281	27	28	21	22	1.99
53466701--53466876	46	3.8	46	76	10	187	28	28	21	22	1.99
53467303--53467362	30	2.0	30	90	0	93	28	25	8	38	1.84
53468408--53468594	55	3.5	54	81	5	209	21	22	19	35	1.96
53480059--53480189	47	2.8	47	82	0	163	35	26	14	23	1.93
53485093--53485134	18	2.3	18	91	0	66	21	26	11	40	1.88
53487057--53487113	26	2.2	26	81	9	62	29	21	15	33	1.94
53500863--53500979	42	2.8	42	80	1	126	31	23	17	27	1.97
53500863--53501018	43	3.6	44	77	7	142	30	23	17	27	1.97
53502324--53502351	7	4.0	7	100	0	56	28	14	0	57	1.38
53502338--53502401	31	2.1	31	90	0	101	25	23	14	37	1.92
53502596--53502789	25	8.0	23	82	10	219	28	22	20	28	1.98
53502847--53502903	9	5.9	9	73	15	51	35	21	8	35	1.84
53502835--53502905	20	3.5	20	94	0	124	32	21	11	35	1.89
53502840--53502894	11	5.4	11	70	16	55	30	20	12	36	1.90
53504145--53504228	27	3.1	27	89	3	125	21	26	21	30	1.98
53504290--53504374	29	3.1	27	79	15	86	37	10	14	37	1.80
53504376--53504557	27	6.8	26	80	8	179	30	8	19	41	1.81
53504379--53504571	54	3.6	53	81	8	210	30	7	20	40	1.81
53504377--53504571	81	2.4	81	88	2	277	30	7	21	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53504377--53504598	81	2.8	81	84	4	200	33	7	20	38	1.81
53504550--53504673	27	4.6	27	85	0	158	39	8	22	29	1.84
53513792--53513829	14	2.8	13	78	21	51	31	2	13	52	1.54
53516489--53516557	30	2.3	30	94	2	120	40	11	15	31	1.84
53518692--53518807	25	4.7	25	63	7	58	23	24	20	31	1.98
53522289--53522358	27	2.6	27	90	0	113	44	12	21	21	1.85
53526290--53526326	16	2.3	17	86	13	60	62	0	0	37	0.96
53526352--53526412	17	3.6	17	70	16	54	52	1	0	45	1.10
53530306--53530528	48	4.8	48	74	10	183	27	20	24	27	1.99
53531656--53531723	30	2.3	30	87	5	93	16	22	38	23	1.93
53536523--53536806	48	5.9	48	82	4	234	28	15	27	27	1.96
53536528--53536790	96	2.7	94	79	6	296	28	15	27	27	1.97
53538016--53538060	21	2.1	21	95	0	81	46	17	11	24	1.81
53542721--53542861	48	3.0	48	86	1	203	31	15	21	31	1.94
53551318--53551427	47	2.3	48	84	1	150	32	16	20	30	1.94
53551391--53551467	38	2.0	38	89	0	118	29	11	25	32	1.91
53558433--53558518	42	2.0	42	97	0	163	36	5	16	41	1.72
53570670--53570784	25	4.6	25	82	5	119	23	22	20	33	1.98
53574184--53574368	40	4.6	40	81	3	219	23	27	24	24	2.00
53597003--53597091	30	3.0	30	77	11	85	55	15	19	10	1.68
53597014--53597091	30	2.6	30	82	8	95	53	15	19	11	1.71
53597003--53597082	15	5.4	15	75	7	74	56	13	20	10	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53597014--53597091	15	5.2	15	75	6	77	53	15	19	11	1.71
53620879--53620916	15	2.5	15	83	8	51	7	13	7	71	1.31
53628635--53628678	19	2.3	19	92	0	70	18	9	36	36	1.82
53629684--53629716	10	3.3	10	91	0	57	33	30	0	36	1.58
53629716--53629845	43	3.0	43	79	0	116	33	17	21	26	1.96
53637878--53637920	16	2.8	15	75	6	50	39	23	0	37	1.55
53638917--53638976	27	2.3	26	85	2	75	33	21	23	21	1.97
53638944--53639087	67	2.1	67	83	10	173	32	22	25	18	1.97
53642556--53642683	27	4.7	27	84	0	157	29	22	8	39	1.84
53642543--53642655	54	2.1	54	86	3	156	31	23	8	36	1.85
53642671--53642747	27	2.9	27	90	0	118	40	19	7	32	1.80
53642509--53642721	81	2.6	81	72	0	192	34	21	7	36	1.82
53642728--53643089	27	13.4	27	86	0	465	35	19	19	26	1.95
53643417--53643475	22	2.7	22	83	0	73	20	23	22	33	1.97
53643633--53643734	27	3.8	26	84	7	107	19	23	20	36	1.95
53643894--53644008	6	18.8	6	75	13	101	19	16	15	48	1.81
53643879--53643994	37	3.3	37	81	14	154	18	16	14	50	1.78
53643900--53643985	31	2.8	31	90	0	136	18	17	15	48	1.81
53652904--53652955	27	2.0	26	84	3	68	17	26	21	34	1.95
53656448--53656503	28	2.0	28	89	6	87	35	19	17	26	1.94
53657772--53657809	20	1.9	20	88	0	58	26	26	5	42	1.76
53662934--53662976	22	2.0	22	85	0	59	11	23	25	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53666753--53666817	28	2.3	28	91	0	103	30	9	27	32	1.88
53667884--53667916	12	2.6	13	85	9	50	45	0	45	9	1.35
53668520--53668554	14	2.5	14	100	0	70	25	22	14	37	1.92
53671449--53671594	40	3.7	40	95	1	249	26	29	22	21	1.99
53676357--53676389	11	3.1	11	86	8	50	51	9	9	30	1.64
53677438--53677552	55	2.1	56	82	8	137	34	22	24	18	1.96
53677463--53677552	27	3.2	27	81	7	101	32	24	24	18	1.97
53677658--53677722	28	2.3	28	94	0	112	30	7	27	33	1.85
53677658--53677731	28	2.6	28	85	4	96	31	8	25	35	1.85
53695242--53695356	55	2.1	56	82	8	137	34	22	24	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320