genome.fa.s12.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  192  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63754201--63754380	83	2.2	82	91	1	288	27	13	27	31	1.94
63755921--63756088	47	3.6	47	95	0	291	30	28	7	33	1.85
63758052--63758076	13	1.9	13	100	0	50	36	16	16	32	1.90
63762559--63762724	46	3.6	46	77	8	183	30	30	18	21	1.97
63762567--63762738	93	1.8	93	88	0	263	28	29	19	22	1.98
63766461--63766512	25	2.0	26	88	3	79	30	26	23	19	1.98
63766502--63766562	27	2.3	27	91	0	104	29	26	21	22	1.99
63778548--63778667	49	2.4	49	78	6	127	24	25	21	28	1.99
63779500--63779557	30	1.9	30	85	0	80	41	6	20	31	1.79
63787948--63787998	22	2.3	22	93	0	93	58	3	23	13	1.52
63789258--63789309	16	3.2	16	83	0	59	50	5	15	28	1.67
63793064--63793246	101	1.8	101	86	0	267	28	22	20	27	1.99
63793055--63793293	50	4.7	50	75	3	192	29	23	18	27	1.98
63803313--63803342	15	2.0	15	100	0	60	26	6	26	40	1.81
63813064--63813234	93	1.8	93	94	0	306	29	29	20	20	1.98
63813056--63813231	46	3.8	46	78	12	198	30	29	19	20	1.97
63819302--63819358	26	2.2	26	77	0	60	36	15	19	28	1.92
63821249--63821379	27	4.9	27	90	3	201	27	22	9	39	1.86
63821231--63821523	27	10.9	27	80	6	137	36	23	8	32	1.85
63821249--63821406	54	2.9	54	86	5	160	29	22	9	37	1.86
63821371--63821566	54	3.6	54	86	2	243	41	22	8	26	1.83
63821230--63821420	81	2.4	81	77	0	211	31	22	9	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63821371--63821550	81	2.2	81	84	3	220	42	24	7	25	1.81
63821371--63821566	27	7.3	27	78	5	182	41	22	8	26	1.83
63821400--63821550	81	1.9	81	88	2	232	42	25	7	23	1.81
63821594--63821783	27	7.0	26	86	7	229	36	20	18	23	1.95
63821594--63821783	81	2.3	81	86	5	258	36	20	18	23	1.95
63821989--63822057	25	2.8	24	93	6	120	26	27	21	24	1.99
63821988--63822082	50	1.9	50	80	8	113	28	25	22	24	1.99
63823228--63823288	27	2.2	27	88	2	86	19	14	39	26	1.90
63823567--63823618	26	2.0	26	100	0	104	38	7	23	30	1.83
63823635--63823840	27	7.7	27	82	1	252	37	22	12	27	1.90
63823642--63823828	81	2.3	80	90	2	295	36	22	13	27	1.92
63823792--63823895	27	3.9	27	82	2	102	39	21	11	27	1.88
63823635--63823865	54	4.3	53	80	3	230	38	22	12	27	1.89
63823819--63823910	27	3.4	27	82	5	105	39	17	15	28	1.90
63826146--63826540	49	7.9	49	79	3	405	26	17	26	29	1.97
63826145--63826542	150	2.7	150	95	0	699	26	17	26	29	1.97
63828457--63828710	40	6.3	40	86	1	305	25	21	25	27	2.00
63828457--63828746	80	3.7	79	84	4	313	24	21	26	27	1.99
63835358--63835411	27	2.0	27	85	0	72	38	7	14	38	1.75
63835660--63835798	51	2.8	49	81	2	152	26	20	23	28	1.99
63842087--63842188	28	3.6	28	90	5	170	20	12	35	31	1.90
63842087--63842206	28	4.3	28	90	0	168	20	13	36	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63842524--63842861	27	12.7	27	79	5	337	39	21	9	30	1.85
63842544--63842876	106	3.1	106	82	5	388	39	19	9	31	1.85
63842786--63842901	27	4.3	27	79	4	92	40	19	10	29	1.85
63847778--63847820	18	2.4	18	77	14	52	46	4	11	37	1.61
63851968--63852058	41	2.2	41	84	3	112	21	28	27	21	1.99
63852785--63852832	3	16.0	3	91	0	60	29	0	37	33	1.58
63852770--63852823	24	2.2	24	83	6	65	31	0	37	31	1.58
63854652--63854693	21	2.0	21	85	0	57	28	9	7	54	1.59
63871921--63872048	28	4.5	28	88	2	175	28	12	25	32	1.92
63871921--63872048	57	2.2	57	88	2	186	28	12	25	32	1.92
63881093--63881126	18	1.9	18	88	5	52	14	29	11	44	1.81
63883120--63883180	31	1.9	31	83	3	77	37	18	21	22	1.94
63883196--63883247	27	2.0	26	84	3	68	34	21	26	17	1.95
63886037--63886123	27	3.2	27	81	3	104	36	19	22	20	1.95
63889188--63889448	39	6.6	39	86	6	302	26	21	27	24	2.00
63895661--63895776	57	2.1	56	91	1	187	32	33	17	16	1.92
63898805--63898929	29	4.3	29	89	1	189	28	32	13	25	1.94
63901059--63901161	32	3.2	32	73	5	91	33	20	21	24	1.97
63904238--63904310	29	2.5	30	82	14	100	27	13	30	28	1.94
63904269--63904591	171	1.9	172	92	3	544	30	14	24	30	1.94
63912340--63912417	29	2.7	28	84	11	104	25	15	30	28	1.96
63912370--63912696	173	1.9	174	93	0	566	30	14	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63918252--63918411	51	3.2	51	93	0	250	30	22	14	33	1.94
63922786--63922930	40	3.6	40	85	4	184	25	24	26	24	2.00
63926843--63926962	56	2.1	56	98	0	231	45	9	23	22	1.81
63929719--63929898	27	6.6	27	82	5	182	30	28	14	26	1.95
63929719--63929898	55	3.3	55	81	5	202	30	28	14	26	1.95
63929741--63929897	82	1.9	81	88	3	235	30	28	14	26	1.95
63932871--63933310	47	9.4	47	91	3	699	32	8	29	29	1.87
63933429--63933507	37	2.1	37	83	4	97	26	17	29	26	1.98
63935387--63935454	28	2.4	28	97	0	127	25	11	32	30	1.91
63935415--63935503	43	2.1	43	100	0	178	22	14	35	26	1.93
63935485--63935558	29	2.6	29	89	4	105	25	16	32	25	1.96
63935867--63936049	40	4.6	40	82	6	185	26	23	25	25	2.00
63939600--63939996	47	8.4	47	91	1	614	32	8	28	29	1.87
63939600--63939996	143	2.8	141	91	1	623	32	8	28	29	1.87
63939600--63939996	190	2.1	188	91	0	632	32	8	28	29	1.87
63940115--63940193	37	2.1	37	88	4	115	25	18	30	25	1.98
63942896--63943342	47	9.5	47	95	0	777	32	8	29	29	1.87
63942957--63943032	22	3.3	22	64	10	62	30	11	28	28	1.92
63943461--63943539	37	2.1	37	90	0	122	24	18	31	25	1.98
63949251--63949395	40	3.6	40	85	4	184	25	25	26	22	2.00
63953619--63953652	17	2.0	17	100	0	68	47	17	0	35	1.48
63959764--63959915	27	5.6	27	92	3	232	30	28	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63959764--63959940	55	3.2	55	89	0	246	31	29	12	26	1.93
63964495--63964648	28	5.5	28	97	0	274	33	28	11	25	1.91
63972717--63972870	28	5.5	28	97	0	274	33	28	11	25	1.91
63983790--63983853	28	2.3	27	79	17	69	64	4	10	20	1.43
63990747--63990806	30	2.0	30	90	6	95	41	5	25	28	1.76
63997604--63997981	129	2.9	127	79	9	395	35	18	19	26	1.95
63998984--63999051	33	2.1	33	100	0	136	45	0	11	42	1.40
64001007--64001272	44	6.2	44	82	7	339	26	27	15	30	1.96
64003257--64003358	37	2.8	37	93	0	168	26	29	18	25	1.98
64003481--64003836	47	7.5	47	91	0	514	27	30	8	33	1.87
64006597--64007057	129	3.6	128	76	11	331	35	18	19	26	1.95
64006690--64007067	129	2.9	128	80	8	399	34	18	19	26	1.95
64008066--64008133	33	2.1	33	100	0	136	45	0	11	42	1.40
64010947--64011048	37	2.8	37	93	0	168	26	29	18	25	1.98
64011167--64011526	47	7.6	47	93	0	576	28	30	8	32	1.87
64011242--64011317	22	3.3	22	64	10	62	27	31	10	30	1.90
64016927--64016952	13	2.0	13	100	0	52	15	30	0	53	1.42
64026780--64027025	49	4.9	50	85	2	325	25	17	27	29	1.97
64026885--64026968	28	3.2	28	65	25	83	23	16	29	29	1.96
64031111--64031283	46	3.7	46	75	13	183	21	19	27	31	1.97
64031108--64031278	93	1.8	93	94	0	306	21	19	28	30	1.97
64034815--64035055	47	5.1	47	94	0	392	34	11	27	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64034844--64034962	22	5.1	22	63	25	66	33	13	28	24	1.93
64034844--64035009	24	7.1	22	64	25	74	33	13	27	25	1.93
64035025--64035209	48	3.8	48	89	5	291	35	7	26	30	1.84
64037120--64037161	15	2.8	15	79	13	50	11	14	16	57	1.66
64039574--64039742	46	3.7	46	73	13	166	23	19	26	30	1.98
64039567--64039737	93	1.8	93	91	0	279	22	19	27	29	1.98
64043001--64043173	27	6.4	27	84	0	193	35	17	20	26	1.95
64043001--64043172	81	2.1	81	84	3	229	35	17	20	26	1.95
64069494--64069678	79	2.3	81	81	8	218	25	28	22	23	1.99
64069494--64069678	40	4.7	40	82	7	225	25	28	22	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320