genome.fa.s12.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  152  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50080641--50081101	213	2.2	213	85	5	655	17	31	35	16	1.92
50081798--50081918	58	2.1	59	90	1	190	23	17	24	33	1.96
50081953--50082006	24	2.2	24	80	0	63	18	27	38	14	1.90
50092985--50093851	43	20.3	43	80	6	714	17	32	32	17	1.93
50092985--50093851	86	10.2	85	80	7	789	17	32	32	17	1.93
50093008--50093803	255	3.1	253	81	5	901	17	31	33	17	1.93
50092951--50093807	298	2.9	298	80	7	875	17	32	33	17	1.93
50097985--50098056	35	2.1	35	86	0	99	36	11	26	26	1.90
50103203--50103274	35	2.1	35	86	0	99	36	11	26	26	1.90
50107123--50107964	85	9.9	84	82	4	738	17	32	32	16	1.93
50107100--50107964	43	20.3	43	83	4	884	18	32	32	16	1.93
50113414--50113444	16	1.9	16	93	0	53	32	32	22	12	1.92
50116147--50116173	12	2.2	12	100	0	54	18	14	40	25	1.89
50121683--50121737	23	2.2	25	87	9	78	14	34	40	10	1.81
50122812--50122931	42	2.8	43	78	15	133	18	33	35	13	1.89
50123456--50123575	58	2.1	58	87	3	170	23	21	24	30	1.99
50137897--50138180	40	7.2	41	77	11	204	19	34	30	15	1.93
50138253--50138773	42	12.6	41	77	10	335	17	30	34	18	1.94
50138352--50138773	85	5.0	86	78	7	337	18	30	32	18	1.95
50138252--50138649	42	9.7	43	79	8	399	16	29	36	18	1.92
50138252--50138773	254	2.1	241	80	7	568	17	30	34	18	1.94
50142927--50142998	35	2.1	35	92	5	119	37	12	23	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50146502--50147052	47	11.6	47	95	1	976	33	8	28	29	1.86
50147171--50147315	37	3.9	37	92	0	227	22	20	31	25	1.98
50148579--50149010	40	10.8	40	89	0	666	26	21	26	25	2.00
50152795--50153327	47	11.3	47	93	1	897	32	8	29	29	1.86
50153445--50153589	37	3.9	37	93	0	236	22	20	31	24	1.98
50154853--50155284	40	10.8	40	90	0	675	26	21	25	26	1.99
50159053--50159744	47	14.6	47	95	0	1213	32	8	29	29	1.86
50159863--50160007	37	3.9	37	93	0	236	22	20	31	24	1.98
50164876--50164947	35	2.1	35	92	5	119	37	12	23	26	1.90
50169969--50170358	43	9.1	43	74	11	189	18	34	30	16	1.94
50170027--50171192	85	13.7	85	84	6	1141	18	32	33	16	1.93
50170027--50171199	128	9.2	129	84	4	1289	18	32	33	16	1.93
50170027--50171199	43	27.6	43	83	4	1260	18	32	33	16	1.93
50171013--50171166	42	3.7	41	75	6	112	18	33	29	17	1.94
50179589--50180092	85	6.0	84	80	10	391	18	33	32	15	1.92
50179645--50180136	43	11.9	41	84	8	492	18	32	33	15	1.92
50179645--50180128	85	5.8	82	80	9	493	17	32	33	15	1.92
50182589--50182802	47	4.6	47	91	0	329	31	8	30	28	1.87
50195587--50195625	19	2.0	20	95	5	71	71	5	12	10	1.28
50206934--50206980	24	2.0	23	84	12	60	40	6	21	31	1.78
50209168--50209201	16	2.1	16	88	0	50	44	20	14	20	1.87
50231492--50231528	19	1.9	19	89	10	58	72	2	18	5	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50232201--50232272	34	2.1	34	82	5	83	38	4	19	37	1.71
50238857--50238956	23	4.3	23	72	6	76	34	20	22	24	1.97
50248087--50248258	40	4.3	39	84	2	191	27	27	20	23	1.99
50248087--50248258	80	2.2	80	85	4	222	27	27	20	23	1.99
50251042--50251201	85	1.9	85	81	5	198	27	24	20	27	1.99
50254466--50254523	26	2.2	26	87	6	82	24	25	15	34	1.95
50255787--50255860	37	2.0	37	100	0	148	43	2	13	40	1.58
50261500--50261657	43	3.7	42	76	12	153	25	19	23	31	1.98
50266434--50266614	40	4.6	40	90	2	267	25	25	23	25	2.00
50267574--50267648	22	3.4	22	65	17	64	37	22	8	32	1.83
50267569--50267659	45	2.0	45	100	0	182	38	21	6	32	1.80
50274653--50274876	40	5.6	40	84	6	283	26	25	22	25	2.00
50274653--50274866	83	2.7	80	87	5	281	26	26	22	24	2.00
50277188--50277298	56	2.0	56	96	0	204	28	2	26	42	1.69
50277474--50277534	27	2.3	27	100	0	122	9	19	39	31	1.84
50283308--50283483	46	3.8	46	80	5	212	21	21	29	28	1.98
50283304--50283475	93	1.8	93	92	2	292	20	21	30	27	1.98
50288303--50288486	40	4.6	39	80	8	183	26	27	21	24	1.99
50288301--50288486	80	2.3	79	83	9	218	26	27	21	24	1.99
50296085--50296252	40	4.2	40	82	8	139	26	27	21	24	1.99
50296122--50296306	40	4.6	40	80	8	180	26	27	21	24	1.99
50296085--50296306	80	2.8	79	78	8	234	26	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50307302--50307387	43	2.0	43	93	0	145	29	32	19	18	1.96
50309720--50309793	29	2.6	29	89	4	105	25	16	32	25	1.96
50316508--50316581	29	2.6	29	86	4	96	25	31	16	27	1.96
50324523--50324596	29	2.6	29	86	4	96	25	31	16	27	1.96
50327246--50327275	12	2.4	13	94	5	53	20	3	26	50	1.64
50337079--50337185	24	4.5	24	80	8	110	18	12	32	36	1.88
50337090--50337149	12	5.0	12	71	15	52	16	13	31	38	1.87
50340895--50341067	46	3.7	46	78	13	201	21	20	28	29	1.98
50340892--50341062	93	1.8	93	93	0	297	21	20	29	28	1.98
50352919--50352972	24	2.3	23	87	6	83	33	16	24	25	1.96
50362358--50362390	7	4.4	8	92	7	52	84	0	0	15	0.61
50362360--50362386	7	3.9	7	100	0	54	88	0	0	11	0.50
50367804--50367843	16	2.3	18	84	16	50	32	0	30	37	1.58
50368226--50368278	26	2.0	26	85	7	72	37	22	15	24	1.92
50380718--50380865	48	3.1	48	80	7	185	29	17	28	25	1.97
50380732--50380883	48	3.2	47	83	3	173	30	17	28	23	1.97
50383212--50383379	46	3.6	46	78	13	200	20	21	29	28	1.98
50383208--50383380	93	1.9	93	95	0	310	20	21	30	27	1.98
50386566--50387348	392	2.0	392	98	0	1503	30	8	20	40	1.81
50387802--50387980	41	4.3	41	90	5	272	17	20	25	36	1.95
50387802--50387980	84	2.2	82	89	6	272	17	20	25	36	1.95
50391864--50391909	16	2.9	16	90	0	65	47	17	23	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50391864--50391915	8	6.6	8	77	2	52	50	17	23	9	1.75
50391863--50391915	24	2.3	23	84	12	72	49	18	22	9	1.76
50392032--50392067	17	2.1	18	89	5	56	25	22	33	19	1.97
50392125--50392210	28	3.0	28	86	3	118	27	12	29	30	1.93
50407895--50407928	13	2.6	13	95	0	59	29	5	5	58	1.45
50413531--50413642	56	2.0	56	100	0	224	37	14	23	25	1.92
50421181--50421278	43	2.3	43	78	5	110	30	16	19	33	1.94
50428180--50428347	45	3.6	46	81	11	157	23	30	19	25	1.98
50449411--50449508	27	3.5	28	87	2	126	25	13	29	31	1.93
50449439--50449522	27	3.0	27	85	5	105	28	11	26	33	1.92
50457370--50457467	27	3.5	28	87	2	126	25	13	29	31	1.93
50457398--50457481	27	3.0	27	85	5	105	28	11	26	33	1.92
50458946--50458981	1	36.0	1	94	0	63	97	0	0	2	0.18
50459209--50459248	15	2.5	16	84	8	55	55	0	12	32	1.38
50462348--50462378	16	1.9	16	93	0	53	16	35	32	16	1.91
50463374--50463436	22	3.0	21	76	17	67	39	20	26	12	1.89
50476021--50476288	48	5.7	45	77	9	200	24	19	30	26	1.98
50476022--50476288	92	2.8	94	78	8	276	24	19	30	25	1.98
50476075--50476288	48	4.6	45	81	2	212	24	19	30	24	1.98
50485038--50485075	19	2.0	20	89	5	60	21	10	26	42	1.85
50493558--50493596	20	2.0	20	85	10	53	48	25	2	23	1.63
50496717--50497132	27	15.4	27	89	1	591	30	22	7	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50497164--50497262	27	3.7	27	81	8	96	43	21	7	28	1.78
50497365--50497438	27	2.7	27	76	12	71	37	20	20	21	1.94
50498244--50498313	25	2.8	24	86	4	95	24	27	24	24	2.00
50498461--50498552	42	2.2	42	90	0	139	30	14	21	33	1.93
50498576--50498747	31	5.5	31	94	0	290	28	13	27	30	1.95
50498576--50498781	93	2.2	93	88	5	260	29	15	26	28	1.96
50501048--50501409	27	13.4	27	86	1	474	30	21	7	40	1.81
50501441--50501539	27	3.7	27	81	8	96	43	21	7	28	1.78
50501655--50501716	28	2.3	27	80	2	70	37	17	24	20	1.94
50501663--50501715	27	1.9	28	84	3	72	32	20	24	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320