genome.fa.s12.2.7.7.80.10.50.1000.318.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  318  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102069876--102069910	18	1.9	18	88	11	54	25	0	5	68	1.11
102072555--102072611	15	3.9	15	86	2	80	36	0	10	52	1.36
102072982--102073045	20	3.1	21	81	4	76	15	21	26	35	1.94
102075264--102075316	26	2.0	26	92	0	88	28	33	20	16	1.95
102075276--102075423	69	2.1	70	91	1	235	31	29	16	22	1.96
102075344--102075564	103	2.2	102	90	4	347	31	32	18	17	1.94
102082354--102082503	71	2.1	71	91	3	241	30	30	16	22	1.96
102082423--102082644	103	2.2	103	93	1	374	31	31	18	18	1.95
102082516--102082566	26	2.0	26	96	0	93	29	35	23	11	1.90
102086656--102086731	26	2.9	26	80	3	82	38	21	22	18	1.94
102087170--102087214	21	2.2	20	88	4	63	42	15	0	42	1.47
102087178--102087216	5	7.6	5	82	5	51	41	17	0	41	1.50
102090637--102090661	13	1.9	13	100	0	50	88	0	0	12	0.53
102095667--102095781	58	2.0	58	92	0	194	32	10	11	46	1.74
102099070--102099136	34	1.9	35	84	3	91	32	10	13	43	1.78
102099085--102099123	20	2.0	20	84	0	51	28	12	12	46	1.79
102102218--102102242	13	1.9	13	100	0	50	68	0	8	24	1.16
102116189--102116536	52	6.9	52	85	8	459	33	14	22	29	1.93
102116237--102116543	98	3.1	98	91	1	429	34	14	22	28	1.93
102116171--102116536	150	2.5	144	91	5	570	34	14	22	28	1.93
102116507--102116726	37	6.0	37	93	1	363	37	15	21	25	1.93
102122030--102122060	16	1.9	16	93	0	53	54	3	0	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102124340--102124385	24	1.9	24	82	8	58	41	4	2	52	1.33
102131569--102131594	8	3.2	8	100	0	52	26	15	23	34	1.94
102134904--102134931	14	2.0	14	100	0	56	57	14	0	28	1.38
102162160--102162204	22	2.0	22	91	0	72	33	2	15	48	1.57
102182294--102182327	15	2.3	15	100	0	68	29	0	0	70	0.87
102182313--102182353	22	2.0	21	85	9	57	46	0	2	51	1.14
102182579--102182627	23	2.1	23	84	0	62	71	4	2	22	1.13
102183014--102183094	29	2.8	29	81	3	83	51	2	0	45	1.14
102187168--102187266	47	2.1	49	96	3	184	57	6	2	34	1.35
102187457--102187501	19	2.3	19	85	11	56	60	2	8	28	1.39
102214292--102214379	35	2.5	35	92	0	149	28	9	26	36	1.87
102221153--102221313	35	4.6	35	87	1	216	36	24	11	27	1.90
102225637--102225678	14	2.9	14	82	13	50	38	0	2	59	1.10
102226370--102226413	23	1.9	23	90	0	70	31	0	4	63	1.14
102227935--102228005	5	14.6	5	76	16	69	38	0	4	57	1.18
102228015--102228046	15	2.1	15	94	0	55	78	0	18	3	0.89
102228884--102228915	13	2.5	13	94	0	55	31	0	12	56	1.37
102229010--102229251	50	4.7	50	83	4	279	27	23	28	20	1.99
102229010--102229259	100	2.4	103	85	6	337	26	23	28	21	1.99
102243907--102243966	5	11.6	5	76	16	52	38	0	3	58	1.15
102243903--102243969	10	7.3	9	73	20	59	40	0	2	56	1.14
102243903--102243968	35	2.0	32	82	8	78	39	0	3	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102243978--102244019	15	2.7	15	88	3	57	73	2	19	4	1.12
102244563--102244619	30	1.9	29	85	3	78	40	1	22	35	1.65
102244831--102244862	13	2.5	13	94	0	55	31	0	12	56	1.37
102244957--102245198	50	4.7	50	84	4	288	26	23	28	20	1.99
102244957--102245206	100	2.4	103	86	6	346	26	23	28	21	1.99
102249538--102249603	5	13.6	5	75	23	61	37	0	3	59	1.13
102249534--102249603	19	3.7	19	78	16	74	38	0	2	58	1.13
102249613--102249654	15	2.7	15	88	3	57	73	2	19	4	1.12
102250471--102250502	13	2.5	13	94	0	55	31	0	12	56	1.37
102250597--102250838	50	4.7	50	83	4	279	27	23	28	20	1.99
102250597--102250846	100	2.4	103	85	6	337	26	23	28	21	1.99
102258533--102258573	20	2.0	21	85	4	57	21	19	9	48	1.77
102262668--102262755	43	2.0	43	100	0	176	30	13	2	53	1.52
102266016--102266069	6	8.7	6	84	8	63	33	1	64	0	1.04
102266016--102266057	17	2.4	18	88	4	59	30	0	69	0	0.89
102269338--102269384	20	2.4	19	82	10	60	70	0	6	23	1.10
102269329--102269391	21	3.1	19	77	20	65	66	0	4	28	1.12
102271974--102272131	51	3.1	51	93	0	262	32	15	22	29	1.95
102283011--102283052	12	3.2	13	80	10	50	71	0	0	28	0.86
102287750--102287794	23	1.9	24	86	4	65	28	2	0	68	1.01
102287775--102287816	21	2.0	21	86	9	59	33	2	0	64	1.07
102287783--102287817	16	2.1	16	89	10	52	37	2	0	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102291885--102291940	17	3.4	16	73	14	51	21	1	5	71	1.15
102292269--102292323	27	2.0	28	82	3	67	56	3	18	21	1.57
102294739--102294768	15	2.0	15	93	0	51	63	0	6	30	1.20
102294858--102294888	15	2.1	15	100	0	62	61	0	6	32	1.21
102295179--102295306	3	42.7	3	73	9	91	59	2	9	28	1.41
102295184--102295223	20	2.0	21	85	5	55	57	2	12	27	1.48
102295205--102295318	12	9.8	11	71	8	59	61	2	7	28	1.36
102296993--102297429	44	9.9	43	72	14	209	29	26	16	27	1.97
102297001--102297487	89	5.5	89	75	10	340	29	26	16	26	1.97
102297049--102297457	87	4.6	88	76	8	319	29	26	17	27	1.97
102297049--102297464	131	3.1	133	91	1	649	29	26	16	27	1.97
102297442--102297736	136	2.2	134	93	2	493	29	23	20	26	1.98
102296989--102297625	44	14.3	46	73	9	201	29	26	17	26	1.97
102297684--102298033	86	4.1	86	93	0	556	26	24	22	26	2.00
102297816--102297947	41	3.1	41	62	19	99	25	25	21	28	1.99
102297759--102297979	42	5.2	42	60	20	98	24	23	24	27	2.00
102302141--102302184	19	2.3	20	84	7	56	40	11	20	27	1.86
102304133--102304162	15	2.0	15	93	0	51	63	0	6	30	1.20
102304253--102304283	15	2.1	15	100	0	62	61	0	6	32	1.21
102304574--102304698	3	41.7	3	72	9	85	59	2	9	28	1.42
102304579--102304618	20	2.0	21	85	5	55	57	2	12	27	1.48
102304633--102304712	12	6.1	13	79	16	69	61	1	6	31	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102335788--102335894	54	2.0	54	84	0	142	40	5	28	26	1.78
102336214--102336273	29	2.1	28	79	14	68	50	16	6	26	1.70
102336829--102336867	16	2.4	17	82	8	53	38	0	0	61	0.96
102346648--102346748	53	1.9	53	84	8	134	57	8	3	29	1.48
102347703--102347749	16	2.9	16	72	15	51	68	0	0	31	0.90
102348196--102348331	30	4.6	31	70	15	94	55	5	2	36	1.37
102351707--102351767	31	2.0	31	83	0	77	34	11	9	44	1.74
102364742--102364771	15	2.0	15	100	0	60	6	26	20	46	1.75
102367588--102367776	59	3.2	57	68	19	152	41	3	4	50	1.37
102367615--102367813	66	3.2	64	68	19	186	41	3	6	49	1.42
102367577--102367874	120	2.5	120	91	2	483	42	3	4	50	1.38
102367650--102367837	61	3.1	61	69	17	183	42	2	6	49	1.40
102367702--102367753	15	3.6	15	80	12	56	44	0	1	53	1.11
102368088--102368122	16	2.2	16	94	0	61	40	34	0	25	1.56
102368678--102368713	6	5.8	6	87	6	54	66	0	0	33	0.92
102369390--102369455	34	2.0	34	93	3	116	40	9	19	30	1.83
102369628--102369686	31	1.9	31	85	0	82	27	15	16	40	1.89
102370917--102371044	53	2.4	53	94	0	220	38	15	18	27	1.91
102371388--102371617	106	2.2	106	83	3	286	31	20	18	28	1.97
102372785--102372858	34	2.2	34	87	0	103	32	25	13	28	1.94
102372913--102373000	27	3.3	27	90	3	124	20	21	15	42	1.89
102373094--102373209	31	3.7	31	86	4	162	27	27	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102373227--102373314	33	2.7	33	83	1	124	26	21	12	39	1.89
102375927--102376077	44	3.3	44	82	12	203	31	13	22	32	1.93
102375968--102376077	51	2.2	51	94	0	193	31	12	23	31	1.92
102380124--102380152	15	1.9	15	100	0	58	65	6	20	6	1.40
102380533--102380573	23	1.9	21	85	14	57	53	0	21	24	1.46
102380904--102380953	15	3.3	15	82	0	73	36	2	12	50	1.51
102380950--102380982	10	3.4	10	95	4	59	51	6	0	42	1.26
102385078--102385224	31	4.7	31	91	0	231	27	28	17	26	1.97
102385217--102385329	33	3.5	31	81	11	113	26	23	12	38	1.90
102385242--102385329	33	2.7	33	87	1	133	25	22	12	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320