genome.fa.s12.2.7.7.80.10.50.1000.284.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  284  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91350438--91350530	3	31.7	3	69	12	50	66	3	5	24	1.28
91350451--91350535	9	8.9	10	72	18	65	67	3	4	24	1.26
91351175--91351221	8	6.0	8	82	9	53	85	0	4	10	0.74
91351172--91351227	27	2.0	29	86	10	82	82	1	5	10	0.91
91351974--91352680	44	15.8	44	70	13	340	27	21	18	31	1.97
91351984--91352412	134	3.2	131	80	8	388	27	21	20	31	1.98
91351974--91352640	180	3.7	180	80	5	663	27	21	18	32	1.97
91352852--91353151	100	3.0	100	97	0	564	28	13	17	40	1.87
91353426--91353550	65	1.9	65	90	3	198	47	10	19	23	1.80
91368455--91368504	25	2.0	26	88	4	75	74	0	6	20	1.03
91377893--91377968	9	7.9	10	72	18	63	67	2	5	25	1.25
91377904--91377983	23	3.5	23	75	16	76	68	1	6	23	1.19
91381644--91381668	8	3.1	8	100	0	50	88	0	0	12	0.53
91384688--91384742	28	2.0	27	82	3	65	41	30	1	25	1.66
91384889--91385006	13	8.1	13	66	20	56	11	0	48	38	1.46
91384888--91385022	30	4.4	32	83	10	174	11	0	48	38	1.45
91384901--91385037	17	8.6	17	70	24	111	12	0	48	38	1.46
91384901--91385037	19	8.6	18	67	27	87	12	0	48	38	1.46
91384899--91385018	61	2.0	61	98	0	231	12	0	47	39	1.47
91385616--91385955	87	3.8	90	78	9	281	36	18	16	28	1.93
91385959--91385990	14	2.3	14	100	0	64	59	6	9	25	1.52
91385742--91386137	178	2.2	177	80	10	432	35	19	15	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91385616--91386137	92	5.8	86	75	10	369	36	18	16	29	1.92
91386074--91386359	69	4.1	69	83	8	330	30	19	17	32	1.95
91386091--91386354	140	1.8	143	87	4	399	28	20	17	33	1.95
91386074--91386368	71	4.1	71	83	6	341	32	19	16	31	1.94
91386063--91386528	71	6.3	73	73	13	238	33	20	16	29	1.95
91386436--91386681	86	2.9	84	85	6	316	35	19	16	28	1.94
91386522--91387071	162	3.4	162	82	5	623	34	20	15	29	1.94
91386768--91387071	86	3.9	76	83	11	337	33	21	15	29	1.94
91387015--91387124	58	1.9	57	88	5	168	31	28	15	24	1.95
91387075--91387210	72	1.9	72	90	0	218	32	19	13	34	1.91
91386940--91387201	132	2.0	130	85	4	348	34	22	14	28	1.94
91387223--91388452	73	16.1	73	72	13	628	34	20	16	29	1.94
91387451--91387480	14	2.2	13	94	5	51	60	10	16	13	1.59
91387072--91389256	312	7.0	300	78	14	1945	34	20	15	29	1.94
91386063--91389012	617	4.7	613	84	9	3223	34	20	16	29	1.94
91388069--91388098	14	2.2	13	94	5	51	60	10	16	13	1.59
91388459--91388620	71	2.2	72	86	4	220	37	22	16	24	1.94
91388606--91388634	14	2.1	14	100	0	58	65	6	13	13	1.45
91388529--91388775	87	2.9	87	80	8	283	34	19	17	28	1.94
91388866--91389249	76	5.0	76	79	10	379	35	20	15	29	1.93
91388866--91389256	148	2.5	149	82	7	457	35	20	15	29	1.93
91394226--91394259	16	2.1	16	88	0	50	32	32	5	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91398674--91398715	15	2.7	16	85	3	50	54	2	11	30	1.49
91400775--91400816	9	4.6	9	83	13	50	30	0	2	66	1.04
91401398--91401447	20	2.5	20	83	3	64	52	12	10	26	1.70
91401962--91402002	5	8.2	5	100	0	82	58	41	0	0	0.98
91404450--91404526	29	2.6	30	89	4	111	51	14	12	20	1.75
91406763--91406807	20	2.1	22	84	8	58	44	4	2	48	1.35
91406804--91406858	26	2.2	25	83	9	67	50	1	1	45	1.22
91410406--91410901	46	10.8	46	89	2	606	41	14	23	20	1.89
91410407--91410901	93	5.4	92	87	3	642	41	14	23	20	1.89
91412578--91412639	24	2.6	23	80	7	61	41	19	19	19	1.90
91413179--91413222	5	8.6	5	85	5	61	40	18	0	40	1.50
91417835--91417994	39	4.1	39	88	0	212	23	22	28	25	1.99
91420049--91420098	19	2.6	18	81	12	55	32	20	0	48	1.50
91420457--91420493	18	2.1	18	94	0	65	24	24	0	51	1.49
91422721--91422758	18	2.1	18	95	0	67	15	18	0	65	1.27
91423840--91423872	18	1.9	17	88	11	50	30	15	12	42	1.83
91430345--91430405	17	3.7	16	73	6	59	70	6	3	19	1.24
91430495--91430532	18	2.1	18	90	0	58	0	50	0	50	1.00
91430499--91430531	11	2.9	12	91	8	52	0	51	0	48	1.00
91430990--91431060	3	23.3	3	71	8	54	30	2	5	60	1.34
91431003--91431063	23	2.8	22	85	5	70	32	3	8	55	1.45
91431026--91431071	23	2.0	23	83	8	58	30	2	10	56	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91438780--91438811	16	2.0	16	93	0	55	34	25	28	12	1.92
91443661--91443775	56	2.1	56	88	3	169	28	17	25	28	1.97
91443717--91444490	74	10.4	74	85	5	879	30	16	21	31	1.96
91443717--91444623	146	6.2	144	80	10	897	30	17	20	31	1.95
91443717--91444623	220	4.2	219	84	8	1106	30	17	20	31	1.95
91444149--91444442	159	1.9	159	89	2	466	28	17	22	31	1.97
91444367--91444608	130	1.9	129	86	4	344	31	17	18	32	1.94
91446577--91446982	68	6.2	66	69	18	204	30	16	28	24	1.97
91446493--91446889	198	2.0	198	98	0	767	28	16	28	26	1.97
91446500--91446982	198	2.4	196	88	5	600	30	16	28	25	1.96
91455236--91455280	19	2.4	19	92	3	74	48	8	13	28	1.72
91455566--91455645	24	3.3	24	73	15	83	53	7	0	38	1.29
91455586--91455670	33	2.8	30	79	11	100	55	7	1	36	1.35
91458177--91458206	7	4.3	7	100	0	60	40	0	0	60	0.97
91458343--91458367	10	2.5	10	100	0	50	8	0	0	92	0.40
91458961--91459310	128	2.7	126	82	3	398	27	15	17	39	1.90
91460903--91460937	3	11.7	3	87	0	52	28	0	0	71	0.86
91462603--91462659	5	11.2	5	94	1	78	38	0	24	36	1.56
91463074--91463213	45	3.1	45	92	0	217	20	20	19	39	1.93
91463397--91463667	18	14.6	18	70	14	140	35	13	15	36	1.87
91466271--91466296	12	2.2	12	100	0	52	0	7	15	76	0.99
91467306--91467612	46	6.7	46	85	3	121	21	22	15	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91467363--91467626	46	5.7	46	90	0	386	22	23	14	40	1.90
91471288--91471561	46	6.0	46	92	0	406	21	22	14	40	1.90
91471288--91471561	92	3.0	92	93	0	449	21	22	14	40	1.90
91473984--91474051	30	2.3	30	84	5	84	27	19	4	48	1.68
91479548--91479591	23	1.9	23	100	0	88	43	22	13	20	1.87
91482591--91482690	25	4.0	25	88	0	146	16	29	19	36	1.93
91482557--91482678	50	2.4	50	83	0	136	20	28	15	35	1.93
91485796--91485901	43	2.5	41	77	10	115	34	25	16	22	1.95
91490008--91490034	14	1.9	14	100	0	54	22	7	11	59	1.56
91493134--91493161	13	2.2	13	100	0	56	21	39	21	17	1.93
91503262--91503444	38	4.8	38	86	2	240	19	20	26	33	1.96
91506037--91506092	26	2.2	26	90	0	85	26	10	8	53	1.65
91506047--91506099	26	2.0	26	100	0	106	28	11	7	52	1.64
91508150--91508179	14	2.1	14	93	0	51	46	36	0	16	1.47
91508863--91509002	59	2.4	60	97	2	266	30	25	16	27	1.97
91510852--91510922	24	3.0	24	97	0	133	35	0	38	26	1.57
91510852--91510945	48	1.9	48	83	10	120	35	2	37	25	1.68
91512330--91512440	27	4.2	26	87	5	141	17	24	20	37	1.93
91518880--91518909	14	2.1	14	93	0	51	46	36	0	16	1.47
91524162--91524189	11	2.5	11	100	0	56	67	0	0	32	0.91
91537961--91538005	23	2.0	23	82	8	56	37	8	13	40	1.76
91544610--91544654	23	2.0	23	82	8	56	37	8	13	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91549974--91550305	47	7.1	47	91	0	477	34	10	29	26	1.89
91550069--91550193	25	5.2	25	64	30	85	31	10	29	28	1.90
91550094--91550215	22	5.3	22	64	30	58	31	12	30	26	1.92
91550279--91550461	46	4.0	46	92	0	285	34	8	31	25	1.86
91554119--91554162	19	2.4	18	85	7	54	40	9	0	50	1.34
91558217--91558392	46	3.8	46	77	12	198	21	21	28	28	1.98
91558214--91558385	93	1.8	93	93	0	299	22	21	28	27	1.99
91562626--91562650	13	1.9	13	100	0	50	48	0	12	40	1.40
91562871--91562930	29	2.0	30	84	9	79	45	3	5	46	1.41
91563187--91563227	17	2.4	17	88	8	57	75	0	17	7	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320