genome.fa.s12.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  153  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50502522--50502591	25	2.8	24	91	4	104	24	28	24	22	1.99
50502739--50502830	42	2.2	42	92	0	148	29	14	21	34	1.93
50507700--50507871	93	1.8	93	94	0	308	28	29	20	20	1.98
50507693--50507868	46	3.8	46	79	12	207	29	29	20	20	1.98
50507742--50507880	47	3.0	46	75	16	144	29	28	19	22	1.98
50509376--50509475	49	2.0	49	92	0	164	34	16	19	31	1.93
50511446--50511627	79	2.3	81	82	7	212	25	21	28	25	1.99
50511446--50511627	40	4.6	40	80	9	194	25	21	28	25	1.99
50511498--50511660	79	2.1	79	82	6	197	26	20	27	25	1.99
50519324--50519504	40	4.5	39	82	5	186	25	23	27	23	2.00
50519324--50519504	79	2.3	81	81	7	210	25	23	27	23	2.00
50519377--50519541	79	2.1	79	80	6	183	27	21	26	24	1.99
50520958--50521034	29	2.7	29	89	0	109	29	28	16	24	1.97
50524406--50524590	68	2.8	64	80	10	205	30	16	28	25	1.96
50526460--50526646	6	30.3	6	69	17	98	47	14	18	19	1.83
50526469--50526562	37	2.5	37	89	0	134	47	13	19	19	1.82
50526512--50526623	31	3.6	31	71	13	95	45	13	19	21	1.84
50526481--50526646	62	2.7	62	88	0	242	46	14	19	19	1.84
50526505--50526587	25	3.4	25	75	5	80	46	13	19	20	1.82
50526543--50526615	37	2.0	37	86	0	101	46	12	20	20	1.82
50526580--50526646	25	2.7	25	80	0	80	44	16	19	19	1.87
50526767--50526846	27	3.0	26	81	5	106	38	17	22	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50527563--50527677	29	4.0	29	81	10	130	28	26	14	29	1.95
50527556--50527665	58	1.9	57	86	1	157	27	27	16	29	1.97
50529479--50529545	27	2.5	27	80	0	80	40	25	5	28	1.79
50529523--50530057	54	10.1	54	85	5	698	29	21	7	41	1.80
50529523--50530057	81	6.7	81	82	6	637	29	21	7	41	1.80
50529523--50529876	27	13.1	27	86	3	462	28	20	8	42	1.81
50529496--50530000	135	3.9	124	79	6	420	29	21	7	40	1.81
50529775--50530057	97	2.8	97	84	5	323	29	21	6	42	1.78
50529872--50530057	27	6.9	27	88	0	255	30	22	5	40	1.78
50529829--50529910	43	1.9	43	89	0	128	31	15	7	45	1.74
50530554--50530619	6	10.8	6	76	9	62	19	18	10	51	1.75
50530498--50530620	37	3.5	37	72	13	114	21	18	10	48	1.78
50538020--50538089	28	2.5	28	88	9	99	31	27	14	27	1.95
50551349--50551524	47	3.7	47	74	9	135	30	18	26	24	1.98
50559014--50559235	94	2.4	90	82	8	252	24	29	18	27	1.98
50559012--50559235	46	4.9	45	80	7	220	24	29	18	27	1.98
50559555--50559611	30	1.9	30	92	0	96	26	26	14	33	1.94
50561525--50561622	27	3.5	28	90	2	135	26	13	28	31	1.94
50561553--50561635	27	3.0	27	87	5	96	30	12	25	32	1.92
50561525--50561636	28	4.0	27	83	6	98	28	12	25	33	1.92
50568260--50568284	11	2.3	11	100	0	50	32	8	32	28	1.86
50569469--50569566	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50569497--50569579	27	3.0	27	87	5	96	30	12	25	32	1.92
50569469--50569580	28	4.0	27	83	6	98	28	12	25	33	1.92
50571261--50571300	15	2.5	16	84	8	55	55	0	12	32	1.38
50574400--50574430	16	1.9	16	93	0	53	16	35	32	16	1.91
50575426--50575488	22	3.0	21	76	17	67	39	20	26	12	1.89
50577085--50577122	7	5.4	7	90	0	58	34	34	0	31	1.58
50577076--50577122	21	2.2	21	84	0	58	34	31	0	34	1.58
50581057--50581119	14	4.5	14	75	13	58	55	1	1	41	1.19
50582036--50582068	17	1.9	18	88	11	52	27	6	12	54	1.60
50597354--50597534	40	4.6	40	81	4	179	24	25	24	24	2.00
50597363--50597534	81	2.2	79	82	3	202	26	26	23	24	2.00
50600877--50600939	32	2.0	32	100	0	126	44	12	17	25	1.84
50624385--50624431	15	3.1	15	87	0	76	34	10	21	34	1.88
50626589--50626616	14	2.0	14	100	0	56	35	0	21	42	1.53
50638128--50638301	46	3.8	45	78	8	181	28	28	21	21	1.98
50638136--50638306	93	1.8	92	89	1	270	28	29	21	21	1.98
50638178--50638321	46	3.1	44	69	21	107	29	28	19	22	1.98
50640674--50640791	30	4.0	30	87	5	159	56	16	16	10	1.66
50640673--50640782	15	7.4	15	79	9	118	58	14	17	10	1.63
50643724--50643901	46	3.8	46	76	4	178	29	28	20	21	1.98
50645375--50645810	71	6.2	70	77	7	303	34	22	18	23	1.96
50645726--50645920	70	2.8	70	79	4	207	31	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50653299--50653351	15	3.6	15	80	10	56	54	0	9	35	1.33
50661638--50661815	27	6.6	27	82	3	187	26	15	29	28	1.96
50661639--50661794	82	1.9	81	85	3	215	26	15	29	28	1.96
50661635--50661815	82	2.2	81	81	2	211	27	15	28	28	1.96
50665372--50665589	46	4.8	45	73	12	176	25	19	29	24	1.98
50665375--50665589	94	2.3	93	82	6	251	26	19	29	25	1.98
50672765--50672909	48	3.0	47	76	5	157	24	15	31	28	1.96
50674991--50675121	41	3.1	41	69	12	131	25	18	30	25	1.98
50674927--50675152	84	2.7	84	94	0	389	27	18	27	26	1.98
50677932--50678074	40	3.6	40	92	1	225	22	23	28	25	1.99
50677932--50678107	40	4.4	40	88	6	146	23	23	28	24	2.00
50682463--50682492	15	2.1	15	93	6	53	30	6	26	36	1.82
50684431--50684563	41	3.2	39	71	16	115	27	19	27	26	1.99
50684386--50684611	84	2.7	84	92	0	380	28	19	27	24	1.98
50684390--50684608	42	5.2	43	67	14	159	28	18	27	24	1.98
50684450--50684582	41	3.2	40	69	13	115	27	18	29	24	1.98
50684390--50684609	43	5.2	43	68	14	170	28	19	27	24	1.98
50685722--50685797	37	2.1	37	100	0	152	27	13	13	46	1.80
50686476--50686762	48	6.0	48	75	5	260	27	21	27	23	1.99
50686476--50686763	96	3.0	95	80	7	289	27	21	27	23	1.99
50686483--50686762	144	1.9	144	82	5	352	27	20	27	23	1.99
50696578--50696672	43	2.2	42	83	5	120	30	23	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50698004--50698067	27	2.4	27	81	0	74	28	25	17	29	1.97
50699518--50699754	49	4.8	49	84	2	278	29	27	17	24	1.98
50701892--50701960	30	2.3	31	80	14	83	60	15	13	10	1.58
50704929--50705166	99	2.4	101	86	2	338	28	26	18	26	1.98
50704929--50705166	49	4.8	49	86	2	314	28	26	18	26	1.98
50709267--50709298	16	1.9	17	93	6	57	81	0	18	0	0.70
50722387--50722604	45	4.9	45	91	1	332	22	22	28	25	1.99
50722807--50722868	31	2.0	31	100	0	124	29	9	16	45	1.79
50748666--50748897	49	4.7	49	84	3	293	25	17	27	29	1.97
50748665--50748948	150	1.9	150	89	2	446	26	17	26	29	1.98
50752945--50753071	43	3.0	43	87	2	166	22	16	29	32	1.96
50755595--50755666	36	2.0	36	97	0	135	31	12	27	27	1.93
50756876--50756924	15	3.3	15	82	0	62	14	18	10	57	1.65
50760720--50760775	28	2.0	28	100	0	112	39	14	14	32	1.86
50760926--50761244	47	6.8	47	71	15	209	26	19	29	24	1.98
50761062--50761243	96	1.9	96	86	7	260	24	19	31	23	1.98
50760929--50761241	46	6.7	46	75	13	218	27	18	29	24	1.98
50763907--50763992	43	2.0	43	86	0	118	22	19	29	29	1.98
50764818--50764901	34	2.5	33	80	3	114	26	25	21	27	1.99
50775361--50775398	12	3.2	12	92	0	58	44	0	18	36	1.50
50783979--50784060	43	1.9	43	89	0	128	26	31	20	20	1.98
50790836--50790922	39	2.2	39	93	0	147	26	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50795261--50795342	43	1.9	43	87	0	119	28	29	20	21	1.98
50797793--50798178	27	14.3	27	79	5	208	37	22	8	32	1.83
50797944--50798151	80	2.6	81	85	3	242	40	22	9	28	1.84
50797931--50798263	27	12.3	27	78	5	233	39	21	8	30	1.83
50798294--50798353	27	2.2	27	93	0	102	35	20	28	16	1.94
50798302--50798358	27	2.1	27	100	0	114	29	22	29	17	1.97
50799168--50799315	26	5.8	26	90	1	221	26	22	23	27	1.99
50799460--50799548	42	2.1	42	95	0	160	28	11	20	40	1.86
50799575--50799658	31	2.7	31	87	1	125	28	17	25	28	1.98
50800991--50801206	47	4.6	46	74	10	163	24	28	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320