genome.fa.s12.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  207  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69084105--69084280	46	3.8	46	78	12	198	19	21	29	29	1.98
69084102--69084273	93	1.8	93	93	0	299	20	21	29	28	1.98
69091671--69091846	46	3.8	46	78	12	207	20	20	29	29	1.98
69091668--69091839	93	1.8	93	94	0	308	20	20	29	28	1.98
69097918--69098324	47	8.6	47	93	2	681	29	29	7	32	1.86
69097918--69098324	143	2.9	143	94	2	696	29	29	7	32	1.86
69097918--69098324	190	2.1	190	94	0	717	29	29	7	32	1.86
69101550--69101778	40	5.7	40	88	2	343	25	25	22	25	2.00
69119636--69119868	49	4.7	50	80	2	272	26	18	27	28	1.98
69122757--69122981	40	5.7	40	84	5	269	24	22	27	25	2.00
69122831--69123014	80	2.3	80	82	5	205	26	21	27	24	1.99
69130712--69130936	40	5.7	40	85	5	278	24	23	27	24	2.00
69134615--69134789	46	3.8	46	78	4	190	28	27	21	22	1.99
69134620--69134791	93	1.8	93	89	0	272	27	29	21	21	1.99
69139452--69139532	40	2.0	42	85	4	112	18	22	43	16	1.88
69141711--69141974	27	9.8	27	89	0	375	29	22	7	40	1.82
69141995--69142108	27	4.3	27	83	6	126	42	20	7	29	1.80
69141995--69142145	80	1.9	80	82	5	189	41	20	7	30	1.81
69142133--69142271	27	5.1	27	83	0	179	35	20	19	23	1.95
69142133--69142272	54	2.6	54	87	0	199	36	20	19	23	1.95
69142476--69142569	25	3.8	25	91	1	145	24	23	24	27	2.00
69142476--69142582	25	4.4	24	89	3	126	27	21	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69146684--69146777	40	2.3	40	83	7	111	27	17	28	26	1.97
69149583--69149807	48	4.7	47	74	11	174	25	28	17	28	1.97
69149584--69149812	95	2.4	96	84	3	300	25	28	17	28	1.97
69150658--69150711	28	1.9	27	82	14	65	22	44	18	14	1.86
69151683--69152043	46	7.7	47	73	16	193	23	28	19	28	1.98
69156694--69156917	40	5.6	40	81	5	245	25	20	26	27	1.99
69163157--69163328	40	4.3	40	88	2	213	25	27	21	25	1.99
69163159--69163381	40	5.6	39	82	5	207	25	26	21	26	1.99
69163313--69163390	40	1.9	41	82	10	97	26	28	20	24	1.99
69171096--69171267	40	4.3	40	88	2	222	25	27	20	25	1.99
69171098--69171320	40	5.6	39	83	5	216	25	27	21	26	1.99
69171096--69171320	80	2.8	79	80	7	240	25	27	20	25	1.99
69171252--69171329	40	1.9	41	82	10	97	26	28	20	24	1.99
69174594--69174649	21	2.7	21	94	2	96	21	30	33	14	1.93
69175818--69176151	48	6.9	48	75	7	221	24	28	17	29	1.97
69175816--69176102	97	3.0	97	78	7	282	23	28	18	29	1.98
69175823--69176151	145	2.3	144	78	7	335	24	28	17	29	1.97
69182951--69182998	21	2.2	22	85	3	62	39	20	12	27	1.89
69182951--69183016	21	3.1	21	75	16	57	39	19	15	25	1.91
69203328--69203390	25	2.5	25	89	0	99	31	15	20	31	1.94
69204953--69205046	35	2.7	35	90	3	145	30	19	12	37	1.89
69204953--69205072	35	3.4	34	86	4	134	29	18	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69207606--69207646	15	2.7	15	88	11	57	2	21	0	75	0.92
69207607--69207644	20	1.9	20	84	10	51	2	18	0	78	0.86
69208834--69208876	19	2.2	20	87	4	61	30	11	11	46	1.76
69215132--69215222	45	2.0	45	83	8	114	41	21	10	25	1.86
69218450--69218510	29	2.1	28	88	8	88	31	16	26	26	1.96
69218492--69218567	29	2.6	29	87	2	98	26	15	31	26	1.96
69227182--69227293	42	2.7	42	74	0	107	31	27	15	25	1.95
69228386--69228415	15	2.0	15	100	0	60	40	13	26	20	1.89
69230172--69230395	39	5.7	39	88	2	315	30	29	19	20	1.97
69238049--69238272	39	5.7	38	84	4	286	30	29	19	20	1.97
69238049--69238264	117	1.8	117	88	3	328	30	30	19	20	1.97
69246283--69246321	20	2.0	20	89	0	60	35	0	15	48	1.45
69248169--69248215	10	4.7	10	89	5	69	36	12	19	31	1.89
69248169--69248235	21	3.3	21	83	4	75	37	11	19	31	1.88
69248283--69248352	25	2.8	24	91	4	104	25	25	22	25	2.00
69250392--69250447	24	2.4	24	82	8	71	71	1	21	5	1.15
69268587--69268620	14	2.6	13	90	9	52	23	5	8	61	1.47
69268619--69268875	128	2.0	128	98	0	496	34	13	21	30	1.92
69269734--69269940	53	3.9	54	80	6	224	22	25	16	35	1.95
69269745--69269932	55	3.5	53	81	5	216	21	25	18	35	1.95
69277795--69278019	40	5.6	40	85	3	290	23	22	28	25	2.00
69277799--69277989	83	2.3	80	90	2	283	21	23	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69279582--69279632	19	2.5	19	87	9	66	17	37	29	15	1.91
69283629--69283828	40	5.0	40	87	2	260	27	28	23	21	1.99
69291872--69291932	30	2.0	30	83	0	77	31	22	8	37	1.84
69294191--69294379	55	3.5	53	77	10	179	21	25	17	35	1.95
69294180--69294387	54	3.9	54	78	6	197	21	25	16	36	1.94
69294580--69294663	44	1.9	44	82	4	107	27	25	10	36	1.89
69300831--69301019	55	3.5	53	82	7	229	21	24	17	35	1.95
69300820--69301027	53	3.9	54	82	4	240	22	25	16	35	1.95
69302757--69302907	28	5.4	28	91	1	214	26	11	27	33	1.92
69307023--69307287	40	6.7	40	85	5	286	26	27	21	24	1.99
69306990--69307287	80	3.7	80	79	9	263	25	27	21	25	1.99
69307219--69307296	40	1.9	41	82	10	97	26	28	20	24	1.99
69314596--69314858	40	6.6	40	84	4	255	25	27	21	25	1.99
69314561--69314858	80	3.7	80	78	9	254	25	27	21	26	1.99
69314596--69314858	120	2.2	119	80	4	289	25	27	21	25	1.99
69314790--69314867	40	1.9	41	82	10	97	26	28	20	24	1.99
69321394--69321987	47	12.6	47	93	1	963	31	7	30	29	1.86
69322108--69322183	37	2.1	37	89	0	116	22	18	32	26	1.97
69326069--69326218	28	5.4	28	91	1	205	26	12	28	33	1.92
69326094--69326218	55	2.3	55	91	2	198	27	12	28	32	1.92
69326094--69326218	27	4.6	27	94	1	196	27	12	28	32	1.92
69330348--69330469	43	2.9	41	81	11	156	27	24	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69345128--69345305	47	3.9	44	76	15	166	23	28	20	28	1.99
69346903--69346952	25	2.0	25	100	0	100	32	28	8	32	1.86
69352262--69352383	49	2.6	47	80	5	129	26	31	17	24	1.97
69354874--69354989	43	2.7	43	85	1	162	31	25	18	23	1.97
69360446--69360474	5	5.8	5	100	0	58	0	17	0	82	0.66
69367961--69367994	6	5.7	6	96	0	50	0	58	0	41	0.98
69372009--69372045	18	2.1	17	90	5	56	0	21	0	78	0.75
69375604--69375647	19	2.3	20	81	18	58	4	18	13	63	1.46
69381543--69381572	15	2.1	14	93	6	51	66	0	26	6	1.16
69385112--69385233	27	4.6	27	86	3	149	36	17	19	26	1.94
69387684--69388166	47	10.3	47	90	0	750	34	8	28	28	1.87
69387756--69387877	25	5.1	25	60	18	71	35	6	26	31	1.82
69390030--69390090	22	2.8	22	85	9	88	18	21	24	36	1.95
69390358--69390470	6	18.5	6	68	17	54	20	20	12	46	1.82
69390359--69390446	25	3.6	24	87	1	113	21	20	11	46	1.82
69396839--69396898	28	2.2	27	88	8	86	35	26	23	15	1.94
69397039--69397081	22	2.0	22	86	9	61	44	25	20	9	1.81
69397315--69397379	27	2.4	27	84	5	69	26	18	20	35	1.95
69403583--69403739	56	2.8	54	81	5	163	29	33	17	19	1.95
69419798--69419826	14	2.0	15	93	6	51	27	0	20	51	1.47
69425844--69425875	16	2.0	16	93	0	55	56	0	9	34	1.32
69426238--69426388	42	3.5	43	73	12	148	26	15	23	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69428678--69428855	27	6.6	27	76	6	128	30	27	15	25	1.96
69428678--69428855	54	3.3	54	76	7	155	30	27	15	25	1.96
69445145--69445196	20	2.6	20	75	22	63	19	26	25	28	1.98
69445216--69445267	20	2.6	19	72	6	50	13	36	21	28	1.91
69450874--69450936	32	2.0	32	81	9	76	20	11	28	39	1.87
69453210--69453324	43	2.7	42	81	11	144	20	18	29	31	1.96
69456216--69456392	27	6.5	27	77	6	99	25	15	27	31	1.96
69472711--69472957	40	6.2	40	88	1	318	29	27	19	22	1.98
69476054--69476109	15	3.7	15	85	0	76	8	16	17	57	1.64
69480040--69480224	40	4.7	40	81	8	173	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320