genome.fa.s12.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  130  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42584485--42584646	41	4.0	41	90	0	234	22	23	27	25	2.00
42584794--42584852	22	2.7	21	74	10	55	23	25	18	32	1.97
42587751--42588011	27	9.7	27	69	12	126	40	20	8	29	1.82
42587833--42587982	81	1.9	81	87	2	221	40	19	8	32	1.80
42587751--42588064	108	2.9	108	77	8	293	40	20	9	29	1.84
42587884--42588105	27	8.2	27	70	9	148	38	18	12	30	1.87
42587858--42588105	81	3.1	81	77	4	241	39	18	11	31	1.86
42587751--42588092	54	6.4	54	75	10	254	40	20	9	29	1.85
42588044--42588135	27	3.4	26	88	5	105	38	17	17	27	1.92
42588365--42588485	41	3.0	41	86	0	170	24	23	26	24	2.00
42588633--42588691	22	2.7	22	81	0	64	20	25	22	32	1.98
42591549--42591604	27	2.1	27	86	0	76	30	16	21	32	1.95
42591586--42591709	27	4.6	27	79	10	119	42	23	5	28	1.76
42591611--42592004	27	14.6	27	79	5	287	40	18	9	31	1.82
42591675--42592004	54	6.1	54	79	8	316	39	17	10	32	1.83
42591721--42592016	108	2.7	108	87	2	425	38	17	10	33	1.84
42591743--42592020	54	5.1	54	80	5	321	39	15	10	34	1.83
42592283--42592444	41	4.0	41	89	0	216	22	23	27	25	2.00
42593051--42593118	27	2.6	27	76	6	68	22	19	27	30	1.97
42614399--42614424	10	2.6	10	100	0	52	46	7	15	30	1.74
42623465--42623550	43	2.0	43	100	0	172	23	16	13	46	1.83
42631390--42631485	46	2.1	46	86	5	133	16	27	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42637387--42637445	27	2.1	28	84	3	75	30	1	5	62	1.26
42637415--42637492	25	3.3	23	71	15	61	25	2	7	64	1.33
42639378--42639410	14	2.3	15	89	5	50	3	18	0	78	0.87
42643461--42643621	41	3.9	40	79	6	162	26	25	19	28	1.99
42651013--42651158	41	3.6	40	79	7	159	26	26	19	27	1.99
42655670--42655767	33	2.9	35	70	19	82	46	4	1	47	1.28
42655718--42655774	30	1.9	30	82	13	73	47	3	0	49	1.18
42655947--42655971	13	1.9	13	100	0	50	40	28	8	24	1.83
42660764--42660811	23	2.1	23	96	0	87	35	8	18	37	1.81
42665383--42665441	31	1.9	31	82	6	75	72	1	1	23	1.02
42665496--42665741	3	81.3	3	65	15	80	61	2	8	27	1.38
42665488--42665535	23	2.1	23	84	0	60	68	0	4	27	1.07
42665686--42665747	20	2.8	23	73	16	67	59	1	4	33	1.28
42665629--42665747	47	2.6	44	80	13	143	57	3	7	31	1.43
42668589--42668725	60	2.3	59	82	8	152	25	24	20	29	1.99
42668730--42668772	19	2.2	20	83	4	52	34	25	18	20	1.96
42671663--42671721	31	1.9	31	82	6	75	72	1	1	23	1.02
42671777--42671929	3	50.3	3	68	17	75	62	1	6	29	1.28
42671768--42671813	20	2.4	19	82	7	56	69	0	4	26	1.07
42673000--42673028	7	4.1	7	100	0	58	13	0	44	41	1.44
42676103--42676134	16	1.9	17	93	6	57	59	0	31	9	1.29
42677572--42677615	19	2.3	19	84	7	54	36	2	4	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42677578--42677617	19	2.0	20	90	4	64	40	0	5	55	1.22
42680601--42680740	65	2.1	67	84	6	180	28	6	4	60	1.40
42681066--42681133	22	3.1	22	73	10	59	26	10	5	57	1.55
42692887--42693018	44	2.9	45	84	3	167	30	20	23	25	1.99
42693078--42693188	44	2.5	44	82	0	132	36	18	13	30	1.90
42694502--42694588	3	28.7	3	75	6	77	32	6	1	59	1.31
42695001--42695077	40	1.9	40	81	5	93	24	9	3	62	1.42
42699506--42699663	52	3.1	52	93	1	273	31	29	17	22	1.97
42700029--42700074	23	1.9	24	83	16	60	36	10	6	45	1.65
42702799--42702896	49	2.0	49	100	0	196	24	16	16	42	1.87
42702817--42702920	49	2.1	49	80	7	113	30	15	12	41	1.84
42710166--42710198	13	2.5	13	90	0	57	39	36	21	3	1.69
42739659--42739708	25	2.0	25	88	0	73	38	2	2	58	1.21
42754804--42755087	47	6.4	46	76	13	240	31	9	31	27	1.88
42758182--42758366	40	4.6	39	83	5	203	23	21	28	26	1.99
42758235--42758401	79	2.1	79	83	6	205	25	20	27	25	1.99
42766243--42766425	79	2.3	81	84	7	232	24	22	27	25	2.00
42766244--42766427	40	4.6	40	83	9	216	23	22	28	25	2.00
42766296--42766450	79	2.0	79	84	7	208	25	21	27	25	1.99
42769153--42769187	12	2.9	12	91	0	52	11	14	20	54	1.70
42769338--42769367	4	7.5	4	100	0	60	26	0	23	50	1.50
42769417--42769481	23	2.8	23	79	6	69	35	6	13	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42774834--42775200	182	2.0	182	100	0	734	38	17	11	32	1.86
42775999--42776037	18	2.2	18	95	0	69	30	15	5	48	1.66
42778756--42778810	29	1.9	29	85	3	76	34	25	20	20	1.96
42780103--42780173	20	3.3	20	68	21	63	40	5	4	49	1.46
42780104--42780173	22	3.2	22	66	22	65	40	5	4	50	1.46
42780102--42780191	44	2.0	44	97	0	171	40	10	4	45	1.58
42780250--42780317	28	2.4	30	83	11	81	25	19	2	52	1.59
42780272--42780334	30	2.1	30	85	5	83	31	19	1	47	1.59
42781470--42781528	24	2.5	24	100	0	118	32	5	6	55	1.48
42797261--42797320	30	2.0	30	90	0	93	33	23	6	36	1.81
42798090--42798145	28	2.0	28	96	0	103	17	33	14	33	1.90
42801635--42801696	31	2.0	31	90	0	97	29	25	1	43	1.64
42802560--42802601	21	2.0	21	85	0	57	21	16	42	19	1.89
42815144--42815271	28	4.5	28	88	2	175	28	12	25	32	1.92
42815144--42815271	57	2.2	57	88	2	186	28	12	25	32	1.92
42825615--42825757	57	2.5	57	78	8	148	31	17	20	30	1.95
42829187--42829265	37	2.1	37	88	0	113	26	31	17	24	1.97
42829384--42829548	47	3.5	47	92	0	267	27	30	8	32	1.87
42831961--42832342	40	9.6	40	84	5	366	25	28	22	24	2.00
42834199--42834277	37	2.1	37	90	0	122	25	31	18	24	1.98
42834396--42834560	47	3.5	47	91	0	258	27	31	8	32	1.87
42841382--42841556	46	3.8	45	75	7	172	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42841390--42841560	93	1.8	93	89	0	270	29	29	19	21	1.98
42845890--42846067	27	6.6	27	84	3	205	29	28	15	26	1.96
42845911--42846066	82	1.9	81	88	3	233	29	28	15	26	1.96
42866748--42866805	13	4.5	13	88	0	80	39	25	8	25	1.84
42876059--42876316	40	6.5	40	90	2	360	22	22	29	25	1.99
42885484--42885612	45	2.9	44	81	9	136	34	16	22	26	1.95
42885482--42885612	23	5.7	23	73	8	106	35	16	22	26	1.94
42889603--42889760	56	2.8	56	82	0	199	30	7	15	46	1.74
42896053--42896096	19	2.3	19	81	14	54	59	2	0	38	1.10
42896065--42896131	33	2.0	34	85	11	93	62	2	1	32	1.19
42896056--42896133	10	8.8	9	71	21	58	62	2	1	33	1.17
42901362--42901415	9	6.0	9	78	8	56	61	0	0	38	0.96
42901362--42901415	18	3.1	17	80	17	65	61	0	0	38	0.96
42901364--42901414	19	2.7	20	82	8	54	64	0	0	35	0.94
42901352--42901418	27	2.5	27	83	11	77	59	2	0	37	1.13
42908703--42908835	56	2.4	54	88	3	187	33	22	15	29	1.94
42910748--42910845	34	2.9	33	80	8	110	29	24	25	20	1.99
42930287--42930456	46	3.7	45	76	13	175	22	18	27	30	1.98
42930281--42930451	93	1.8	93	91	2	281	22	19	28	30	1.98
42930681--42930718	19	2.0	20	85	15	53	36	0	23	39	1.55
42930831--42931061	48	4.9	48	73	7	222	28	23	21	26	1.99
42938976--42939155	40	4.5	40	80	8	181	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42939024--42939178	79	2.0	79	82	7	190	26	20	26	27	1.99
42942926--42943048	56	2.2	56	86	0	165	29	15	21	34	1.94
42946498--42946592	48	2.0	48	87	4	138	23	17	28	30	1.97
42946516--42946635	48	2.5	48	79	5	118	26	19	26	27	1.99
42952024--42952925	450	2.0	450	93	0	1554	33	12	20	33	1.90
42953474--42953610	48	2.9	48	82	6	152	27	17	27	28	1.98
42958903--42959016	43	2.7	43	75	17	103	35	23	12	28	1.91
42966366--42966544	51	3.6	50	83	6	229	31	26	17	24	1.97
42972590--42972687	40	2.4	41	88	3	146	26	16	28	28	1.97
42977811--42977903	27	3.2	27	64	21	71	34	20	9	35	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320