genome.fa.s12.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  141  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46131799--46131843	20	2.2	20	84	0	54	35	13	2	48	1.54
46138792--46138913	40	3.0	40	89	4	167	21	24	28	25	1.99
46146663--46146866	40	5.1	40	87	4	270	21	23	27	26	1.99
46147620--46147653	17	1.9	18	88	5	52	52	0	14	32	1.42
46161251--46161342	43	2.1	43	84	11	118	23	20	29	26	1.99
46162900--46162991	43	2.1	43	82	11	109	25	20	28	26	1.99
46164684--46164848	49	3.6	46	82	7	144	29	24	14	31	1.95
46164725--46164895	47	3.6	48	82	6	179	30	26	14	28	1.95
46164921--46165053	31	4.3	31	90	0	194	26	25	21	27	1.99
46169067--46169099	17	1.9	17	100	0	66	30	18	15	36	1.91
46173997--46174079	40	2.1	40	88	4	123	38	22	14	24	1.92
46176679--46176840	42	3.9	42	78	11	181	30	15	24	29	1.96
46187830--46188005	46	3.8	45	79	10	203	21	20	29	28	1.98
46187827--46187997	93	1.8	93	93	0	297	21	21	29	28	1.98
46191271--46191316	24	2.0	23	95	4	83	52	23	17	6	1.68
46191546--46191651	29	3.7	29	80	6	108	27	16	31	25	1.96
46191913--46191963	27	2.0	26	84	7	68	43	23	17	15	1.88
46192700--46192732	17	2.0	17	88	5	50	39	21	9	30	1.84
46201387--46201475	39	2.3	39	88	0	133	32	15	21	30	1.94
46208570--46208747	27	6.6	27	84	3	205	29	28	15	26	1.96
46208591--46208746	82	1.9	81	88	3	233	29	28	15	26	1.96
46209229--46209254	12	2.2	12	100	0	52	42	0	7	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46216681--46216858	27	6.6	27	84	3	205	29	28	15	26	1.96
46216702--46216857	82	1.9	81	88	3	233	29	28	15	26	1.96
46217340--46217365	12	2.2	12	100	0	52	42	0	7	50	1.31
46229769--46229847	37	2.1	37	86	4	106	26	30	17	25	1.97
46229966--46230455	47	10.4	47	91	2	752	28	29	8	32	1.87
46233803--46233959	40	3.9	40	91	0	242	24	26	22	25	2.00
46233816--46234038	40	5.6	40	82	5	229	24	26	23	26	2.00
46233808--46234038	120	1.9	120	81	5	279	24	25	23	25	2.00
46234347--46234425	29	2.7	29	86	5	106	27	32	15	24	1.95
46236329--46236407	37	2.1	37	88	4	115	25	30	18	25	1.98
46236527--46236826	47	6.4	47	90	0	438	28	29	9	33	1.87
46240235--46240343	43	2.6	43	75	8	116	27	16	22	33	1.96
46246561--46246625	29	2.2	29	88	0	94	21	16	30	30	1.96
46246574--46246645	29	2.5	29	79	2	74	22	15	31	30	1.94
46250675--46250784	43	2.6	43	80	11	120	27	19	24	29	1.98
46256632--46256948	47	6.8	46	74	14	238	21	29	20	27	1.98
46256632--46256948	94	3.4	91	78	9	293	21	29	20	27	1.98
46256631--46256948	141	2.3	137	80	10	342	21	29	20	27	1.98
46264112--46264251	51	2.7	51	81	4	158	28	28	16	26	1.97
46267490--46269077	794	2.0	794	94	0	2777	34	12	20	32	1.90
46269569--46269779	46	4.6	46	75	11	182	29	19	27	23	1.98
46276864--46276983	48	2.6	47	88	5	163	31	17	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46276864--46277029	46	3.6	46	83	11	187	31	17	27	24	1.97
46280524--46280550	13	2.1	13	100	0	54	25	14	22	37	1.93
46294077--46294156	40	2.0	40	97	0	151	12	13	22	51	1.75
46294221--46294264	21	2.1	21	100	0	88	54	4	13	27	1.58
46295593--46295621	14	2.1	14	100	0	58	27	20	17	34	1.95
46300843--46301200	47	7.6	47	94	1	590	32	7	30	29	1.86
46302614--46303041	40	10.8	40	92	1	666	23	20	28	26	1.99
46307061--46307371	47	6.6	47	95	1	523	32	8	30	28	1.86
46312243--46312325	29	2.9	29	89	5	125	28	12	32	26	1.92
46312243--46312337	29	3.3	29	80	12	108	28	13	32	25	1.94
46319532--46319671	29	4.9	29	80	2	131	27	14	30	28	1.95
46322158--46322193	18	2.0	18	94	0	63	41	5	22	30	1.76
46325191--46325320	49	2.6	49	85	3	154	27	20	28	23	1.99
46326544--46326728	39	4.7	39	91	0	280	30	24	20	23	1.98
46335854--46336399	47	11.4	47	91	2	768	32	8	29	29	1.88
46336518--46336596	37	2.1	37	85	0	104	25	18	31	24	1.98
46339118--46339341	39	5.7	39	88	0	304	30	22	20	25	1.98
46341253--46341286	15	2.3	15	100	0	68	38	26	8	26	1.85
46350862--46351012	40	3.8	39	85	4	178	24	24	27	23	2.00
46359483--46359528	13	3.6	13	97	2	85	10	32	26	30	1.90
46366092--46366364	48	5.6	48	84	1	314	27	30	18	23	1.98
46377003--46377282	48	5.8	48	80	6	280	27	28	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46376948--46377282	96	3.4	96	80	5	334	27	27	17	27	1.98
46381053--46381315	40	6.6	40	87	3	316	24	20	27	27	1.99
46381106--46381350	80	3.1	80	85	2	253	25	20	28	25	1.99
46392021--46392051	16	1.9	16	93	0	53	35	22	0	41	1.54
46392018--46392057	20	2.0	20	85	0	53	37	22	0	40	1.54
46392300--46392497	55	3.7	52	78	9	184	21	24	17	36	1.94
46395781--46395875	33	2.9	34	73	9	99	35	17	24	22	1.95
46401661--46401880	51	4.6	47	79	10	230	26	17	26	29	1.98
46401660--46401880	50	4.5	49	78	8	188	26	17	26	29	1.98
46406201--46406279	25	3.3	25	62	22	60	31	10	27	30	1.90
46406175--46406300	47	2.7	47	93	0	216	33	11	28	26	1.92
46406223--46406398	48	3.7	47	86	6	205	32	9	28	28	1.88
46406269--46406400	48	2.7	48	94	2	219	34	7	28	29	1.85
46406551--46406658	37	2.9	37	97	0	207	25	19	31	24	1.98
46409842--46409890	25	1.9	26	84	12	66	46	8	2	42	1.45
46420885--46421107	40	5.6	40	86	4	238	26	27	20	25	1.99
46421039--46421116	40	1.9	41	82	10	97	26	28	21	23	1.99
46428380--46428547	39	4.3	40	90	3	225	26	27	21	25	1.99
46428380--46428600	39	5.6	39	84	5	223	26	27	21	25	1.99
46428378--46428600	79	2.8	78	81	4	223	26	27	21	25	1.99
46428532--46428609	40	1.9	41	82	10	97	26	28	21	23	1.99
46435845--46436066	40	5.6	39	87	3	248	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46435845--46436066	119	1.9	119	81	3	277	26	27	20	25	1.99
46435848--46436066	79	2.8	79	82	5	228	26	27	21	25	1.99
46440743--46440785	22	2.0	22	86	9	61	72	4	13	9	1.26
46448169--46448265	40	2.4	40	83	6	108	26	21	25	25	2.00
46448035--46448355	153	2.1	154	79	6	348	31	21	21	25	1.98
46448591--46448630	21	1.9	21	84	0	53	47	25	0	27	1.52
46448845--46448877	12	2.8	12	95	0	57	45	0	9	45	1.35
46454176--46454255	21	4.0	21	82	9	112	47	20	1	31	1.58
46454158--46454274	39	3.0	39	92	0	180	46	21	0	31	1.57
46454188--46454296	30	3.7	30	71	11	109	45	22	1	30	1.62
46454141--46454294	48	3.2	48	81	2	157	47	20	1	31	1.58
46454141--46454283	9	15.2	9	77	8	133	46	20	1	31	1.59
46468488--46468665	46	3.8	48	79	10	172	30	19	28	21	1.97
46485963--46486232	47	5.8	45	76	8	184	31	19	27	22	1.98
46487828--46487949	31	3.9	31	73	2	111	41	32	2	22	1.67
46502393--46502833	47	9.4	47	92	0	711	32	8	31	27	1.87
46510017--46510055	18	2.2	18	85	0	51	64	5	10	20	1.44
46527097--46527129	9	3.7	9	91	0	57	39	24	12	24	1.89
46527097--46527131	18	1.9	18	100	0	70	37	22	11	28	1.89
46527444--46527494	20	2.5	20	90	0	75	17	33	27	21	1.96
46527558--46527582	13	1.9	13	100	0	50	0	48	28	24	1.52
46530265--46530701	47	9.2	47	89	2	649	31	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46530265--46530701	96	4.6	94	91	1	649	31	8	30	29	1.86
46530265--46530701	143	3.1	142	90	3	682	31	8	30	29	1.86
46530819--46530897	37	2.1	37	90	0	122	24	18	31	25	1.98
46534848--46534886	21	1.9	21	94	5	71	20	30	38	10	1.86
46536172--46536347	46	3.8	46	76	7	185	25	27	19	26	1.99
46536172--46536342	93	1.8	93	88	0	261	25	27	19	26	1.99
46540151--46540176	12	2.2	12	100	0	52	23	0	30	46	1.53
46542127--46542289	40	4.1	39	90	4	229	22	23	28	24	1.99
46544506--46544584	37	2.1	37	86	4	106	25	29	18	26	1.98
46544703--46544974	47	5.7	47	92	2	420	28	30	8	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320