genome.fa.s12.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  124  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40296707--40296815	37	2.9	37	93	0	173	23	18	30	27	1.98
40303898--40304020	46	2.6	47	84	5	160	29	17	31	21	1.96
40309137--40309316	27	6.6	27	81	7	175	26	14	28	30	1.95
40309138--40309294	82	1.9	81	88	3	235	26	14	28	30	1.95
40309137--40309291	55	2.9	54	82	5	179	26	14	28	30	1.95
40309272--40309327	29	1.9	29	81	0	67	28	14	26	30	1.95
40313429--40313519	42	2.2	42	85	0	119	37	21	13	27	1.91
40330730--40330907	46	3.8	46	77	10	209	29	28	20	21	1.98
40330737--40330908	93	1.8	93	93	0	299	28	29	20	21	1.98
40338185--40338311	46	2.8	45	89	2	200	29	29	20	20	1.98
40338193--40338331	46	3.0	45	84	5	122	29	28	20	21	1.98
40357101--40357453	48	7.3	48	94	1	589	35	5	27	31	1.81
40366384--40366440	19	2.7	22	84	10	66	36	8	15	38	1.79
40366705--40366740	19	1.9	18	88	5	54	27	0	0	72	0.85
40374554--40374649	42	2.3	42	85	3	122	29	25	22	22	1.99
40380216--40380460	55	4.6	53	79	9	227	36	17	24	21	1.94
40380661--40380691	16	1.9	16	93	0	53	35	0	22	41	1.54
40383606--40383886	48	5.9	48	80	1	287	23	30	20	25	1.99
40383607--40383880	96	2.9	97	85	2	367	23	30	20	25	1.98
40387673--40387750	40	2.0	40	84	5	104	28	20	24	26	1.99
40387738--40387908	74	2.3	74	80	1	191	30	19	21	28	1.97
40388728--40388770	15	2.9	14	82	3	50	20	0	37	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40388735--40388800	14	4.7	13	76	14	60	19	0	31	48	1.49
40388758--40388816	28	2.1	28	84	6	75	23	0	23	52	1.47
40389175--40389214	14	2.9	14	84	0	53	15	0	37	47	1.45
40389156--40389214	21	2.8	21	78	0	64	16	1	35	45	1.58
40389327--40389361	13	2.6	14	86	9	54	22	0	28	48	1.51
40389446--40389547	7	14.6	7	68	13	50	12	0	39	48	1.42
40389470--40389526	21	2.7	21	83	8	62	8	0	42	49	1.34
40389494--40389547	14	3.9	14	87	0	72	12	0	40	46	1.42
40389486--40389532	21	2.2	21	88	0	76	10	0	42	46	1.38
40389494--40389546	21	2.5	21	81	0	61	11	0	41	47	1.39
40405584--40405815	40	5.8	40	84	3	306	25	28	21	24	1.99
40405584--40405815	80	2.9	80	89	1	349	25	28	21	24	1.99
40405555--40405814	120	2.2	120	85	2	344	26	28	20	24	1.99
40412726--40412763	16	2.4	16	82	4	51	55	2	10	31	1.48
40415409--40415542	47	2.8	48	84	5	164	23	19	30	26	1.98
40416059--40416178	60	2.0	60	96	0	222	28	8	25	38	1.84
40416577--40416606	12	2.5	12	100	0	60	30	26	36	6	1.82
40416783--40416842	21	2.9	21	85	7	70	10	35	30	25	1.88
40427991--40428132	42	3.3	44	74	12	132	29	21	21	26	1.99
40430293--40430387	48	2.0	49	89	2	147	34	16	25	23	1.95
40439524--40439576	24	2.2	24	96	0	97	32	3	43	20	1.70
40441020--40441120	27	3.8	26	83	6	112	19	24	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40441010--40441120	54	2.1	53	84	1	141	18	23	20	36	1.95
40450011--40450078	29	2.3	29	85	5	93	27	30	13	27	1.94
40449900--40450227	174	1.9	174	96	0	602	31	24	14	30	1.94
40450187--40450258	29	2.5	30	82	13	96	30	29	12	27	1.93
40455360--40455613	68	3.9	65	76	10	205	24	27	17	30	1.97
40456279--40456339	30	2.0	30	83	0	77	31	22	8	37	1.84
40457219--40457401	46	4.0	44	77	13	149	26	18	30	25	1.98
40457273--40457391	48	2.6	45	83	10	143	27	15	29	26	1.96
40460611--40460820	40	5.3	40	90	2	264	25	21	27	25	1.99
40460558--40460820	120	2.2	120	81	6	293	25	21	27	25	1.99
40460559--40460855	80	3.7	80	81	7	223	26	21	27	24	1.99
40468588--40468719	40	3.3	40	89	4	187	26	23	26	23	2.00
40468694--40468743	26	2.0	26	92	4	84	22	24	28	26	1.99
40468654--40468782	64	2.0	66	84	6	174	24	22	26	26	2.00
40481427--40481609	79	2.3	81	84	7	232	24	22	27	25	2.00
40481428--40481611	40	4.6	40	83	9	216	23	22	28	25	2.00
40481480--40481634	79	2.0	79	84	7	208	25	21	27	25	1.99
40485270--40485369	43	2.3	43	87	3	139	26	27	21	26	1.99
40485754--40485841	28	3.1	29	79	10	94	35	21	22	20	1.96
40485947--40486011	28	2.3	28	89	0	94	30	9	26	33	1.88
40487075--40487107	12	2.6	13	85	9	50	45	0	45	9	1.35
40487712--40487927	46	4.6	46	78	7	186	22	31	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40497073--40497111	20	2.0	20	84	0	51	43	12	7	35	1.72
40499937--40499976	14	2.9	14	84	0	53	32	7	17	42	1.77
40499960--40499998	20	2.0	20	89	0	60	28	10	12	48	1.74
40503813--40504074	39	6.7	40	86	7	319	25	22	27	24	2.00
40511839--40512100	39	6.7	40	86	7	319	25	22	26	24	2.00
40511868--40512133	78	3.4	79	81	9	233	28	21	25	24	1.99
40515857--40516034	27	6.6	27	82	5	180	29	28	15	26	1.96
40515878--40516033	82	1.9	81	88	3	233	29	28	15	26	1.96
40516578--40516602	13	1.9	13	100	0	50	32	16	20	32	1.94
40521655--40521695	10	4.2	10	84	6	57	41	0	9	48	1.36
40521632--40521693	19	3.3	19	78	14	74	40	1	12	45	1.52
40522449--40522481	12	3.0	11	91	8	50	36	0	30	33	1.58
40525492--40525766	48	5.7	48	80	6	290	28	30	17	24	1.97
40533026--40533339	48	6.6	48	89	2	429	29	31	16	22	1.96
40536342--40536453	42	2.7	42	73	2	109	30	24	14	31	1.94
40536955--40537005	26	2.0	25	85	14	68	31	29	3	35	1.76
40543558--40543741	101	1.8	99	84	4	253	29	28	16	25	1.97
40545869--40545934	15	4.4	15	75	19	66	63	13	13	9	1.51
40548912--40549105	49	3.9	49	77	6	185	28	27	18	25	1.98
40554850--40555007	40	4.0	40	93	0	262	23	19	28	28	1.98
40554865--40555033	80	2.1	80	85	0	221	23	21	28	27	1.99
40557050--40557109	21	2.9	21	92	2	95	20	28	40	11	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40558296--40558423	46	2.7	46	83	4	150	21	30	18	28	1.97
40558340--40558467	47	2.8	45	80	9	141	23	28	17	31	1.97
40559979--40560017	20	2.0	20	89	0	60	38	12	12	35	1.82
40560163--40560219	23	2.4	23	82	8	71	29	22	22	24	1.99
40560181--40560243	23	2.7	24	82	7	67	38	22	20	19	1.94
40560224--40560278	26	2.2	26	83	6	69	36	20	18	25	1.94
40563614--40563647	16	2.1	16	89	10	52	29	17	0	52	1.45
40568880--40569113	23	10.2	23	83	5	276	23	19	24	32	1.98
40568869--40569103	46	5.1	46	88	6	307	23	20	24	31	1.98
40568869--40569113	69	3.6	69	83	4	314	23	19	24	32	1.98
40575244--40575486	23	10.6	23	82	5	294	22	20	26	30	1.98
40575233--40575468	46	5.1	46	91	2	375	22	21	26	30	1.99
40575233--40575486	69	3.7	69	84	6	343	22	20	26	31	1.98
40576819--40576993	40	4.4	40	87	5	225	23	28	23	24	1.99
40584973--40585109	40	3.5	40	88	3	206	24	30	23	21	1.99
40590299--40590389	41	2.2	42	88	4	130	23	31	26	18	1.97
40591041--40591111	24	3.0	24	93	0	115	36	1	36	25	1.65
40592523--40592634	27	4.1	27	79	7	120	16	23	22	37	1.94
40592524--40592630	54	2.0	54	85	3	144	17	22	21	38	1.93
40597083--40597186	52	2.0	51	81	1	118	16	22	32	28	1.95
40599110--40599156	22	2.2	22	88	3	69	21	36	27	14	1.93
40602177--40602256	24	3.3	24	82	1	97	23	26	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40612052--40612229	27	6.6	27	83	3	178	29	28	15	26	1.96
40612078--40612228	82	1.9	81	88	4	232	28	27	16	27	1.97
40631101--40631269	39	4.3	40	89	2	225	24	21	28	26	1.99
40631048--40631269	79	2.8	79	81	6	225	24	21	27	26	1.99
40631123--40631304	79	2.3	79	82	2	215	25	20	28	25	1.99
40636347--40636478	40	3.3	40	88	2	185	26	28	21	24	1.99
40636347--40636531	40	4.7	40	82	5	151	26	28	21	24	1.99
40638790--40639012	80	2.8	79	80	3	223	24	21	28	25	1.99
40638843--40639012	40	4.3	40	87	0	216	23	21	29	25	1.99
40638865--40639047	79	2.3	80	81	1	217	25	20	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320