genome.fa.s12.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  128  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41898631--41898725	44	2.1	45	92	1	156	25	27	23	24	2.00
41898833--41899217	75	5.1	74	82	7	418	34	18	17	28	1.95
41898835--41899217	77	5.1	74	82	6	448	34	19	18	28	1.95
41909134--41909200	20	3.2	20	67	22	57	35	13	8	41	1.76
41909105--41909210	42	2.5	42	90	1	167	33	11	13	41	1.80
41909193--41909237	14	3.3	14	84	6	65	37	0	13	48	1.42
41912919--41912962	21	2.2	20	83	4	52	54	4	11	29	1.56
41912887--41912987	45	2.2	44	79	8	114	53	6	7	31	1.56
41912881--41913163	25	11.7	25	71	19	169	54	4	6	35	1.46
41912977--41913069	27	3.2	30	75	17	106	54	5	4	35	1.43
41913020--41913122	14	7.2	15	66	24	53	55	1	4	37	1.33
41913028--41913139	17	6.4	17	70	19	61	55	2	4	37	1.34
41913017--41913164	13	11.7	13	68	21	66	54	2	4	38	1.36
41913020--41913107	15	6.4	14	67	24	53	56	1	4	37	1.27
41913037--41913164	23	5.7	22	70	22	72	53	3	4	38	1.37
41913033--41913120	38	2.2	38	84	9	106	55	2	4	37	1.33
41913205--41913258	23	2.5	20	80	13	54	55	7	1	35	1.39
41913253--41913336	15	4.9	17	71	19	59	59	1	3	35	1.22
41913281--41913345	34	1.9	34	84	6	87	61	0	1	36	1.05
41915669--41915709	20	2.0	20	90	0	64	41	12	17	29	1.85
41916027--41916167	63	2.3	62	85	6	187	27	31	20	20	1.98
41916481--41916519	20	2.0	20	84	0	51	17	2	5	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41929270--41929317	19	2.4	19	86	6	60	31	0	0	68	0.90
41930104--41930151	25	1.9	25	82	0	60	45	4	0	50	1.21
41939261--41939506	49	5.0	49	86	3	303	29	27	17	25	1.97
41939261--41939507	101	2.5	99	84	2	316	29	27	17	25	1.97
41940097--41940122	8	3.2	8	100	0	52	30	11	34	23	1.90
41941610--41941739	52	2.5	53	89	2	201	25	32	26	15	1.95
41941610--41941756	53	2.8	52	88	2	215	23	31	28	16	1.96
41942613--41942677	21	3.1	21	72	12	62	36	12	27	23	1.90
41942606--41942709	42	2.5	43	81	7	133	40	14	26	18	1.89
41946853--41946895	22	2.0	21	82	13	52	41	23	0	34	1.55
41952164--41952197	18	1.9	18	94	5	61	5	14	0	79	0.91
41954144--41954299	77	2.0	77	100	0	312	33	21	7	37	1.82
41958105--41958136	16	2.0	17	88	11	50	31	0	12	56	1.37
41968531--41968564	14	2.4	14	90	0	50	47	0	17	35	1.48
41971569--41971708	27	5.2	28	77	13	143	36	22	22	18	1.95
41971569--41971711	54	2.7	54	89	3	209	36	22	23	18	1.95
41973305--41973360	26	2.2	26	96	0	103	35	25	7	32	1.83
41984133--41984313	28	6.5	28	94	1	294	25	13	28	32	1.93
41992714--41992903	104	1.8	104	80	2	229	29	23	16	30	1.96
41998567--41998908	47	7.3	47	90	0	540	33	8	30	27	1.87
41998567--41998904	94	3.6	94	95	0	595	33	8	30	27	1.87
42002731--42002904	46	3.8	46	77	14	196	21	20	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42002726--42002896	93	1.8	93	92	2	290	21	20	29	28	1.98
42010306--42010481	46	3.8	46	79	12	207	20	20	29	29	1.98
42010303--42010474	93	1.8	93	94	0	308	20	20	29	28	1.98
42013032--42013158	42	3.0	42	85	6	161	29	25	14	30	1.95
42013117--42013236	47	2.6	47	83	1	143	30	26	15	28	1.96
42013265--42013413	31	4.8	31	86	3	192	26	26	18	28	1.98
42013395--42013517	50	2.4	51	87	5	187	26	21	15	35	1.94
42013633--42013661	14	2.0	15	93	6	51	55	10	6	27	1.59
42018584--42018636	15	3.3	15	76	19	52	54	1	1	41	1.22
42026303--42026334	15	2.1	15	94	0	55	3	21	0	75	0.95
42027456--42027495	18	2.2	18	86	0	53	5	2	27	65	1.27
42034868--42034977	52	2.1	52	94	1	195	28	15	27	29	1.96
42043994--42044050	30	1.9	30	85	0	78	28	22	8	40	1.84
42049363--42049399	11	3.4	11	92	0	56	18	0	2	78	0.87
42049937--42049996	30	2.0	30	96	0	111	25	3	10	61	1.43
42053330--42053394	32	2.0	32	93	0	112	35	9	12	43	1.74
42072594--42072633	21	2.0	20	90	9	64	65	5	15	15	1.44
42075368--42075428	23	2.5	23	81	7	68	3	32	18	45	1.65
42077456--42077483	8	3.5	8	100	0	56	50	0	0	50	1.00
42077741--42077775	13	2.7	13	90	0	61	42	25	11	20	1.85
42080742--42080775	17	2.1	17	88	5	52	41	0	8	50	1.34
42082277--42082301	12	2.1	12	100	0	50	16	0	16	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42085621--42085645	13	1.9	13	100	0	50	36	0	16	48	1.46
42106797--42106898	48	2.1	49	90	3	163	35	13	9	41	1.78
42110070--42110245	46	3.8	46	79	12	207	21	21	28	28	1.98
42110067--42110238	93	1.8	93	94	0	308	21	21	29	27	1.99
42113555--42113583	2	14.5	2	100	0	58	48	0	51	0	1.00
42117663--42117692	14	2.1	14	93	0	51	30	0	13	56	1.37
42120601--42120779	66	2.7	66	82	6	195	28	13	27	30	1.95
42121111--42121157	21	2.2	21	92	0	85	36	14	21	27	1.93
42122909--42122970	31	2.0	31	81	9	74	61	0	17	20	1.35
42128430--42128595	46	3.6	46	76	8	174	28	18	28	24	1.98
42128433--42128616	94	2.0	94	83	2	235	27	21	27	23	1.99
42128661--42128784	49	2.5	48	77	5	133	29	20	26	22	1.99
42132663--42132736	32	2.3	32	83	4	87	22	21	22	32	1.98
42137132--42137181	24	2.1	24	85	7	66	32	0	2	66	1.03
42141651--42141923	40	6.8	40	94	2	426	22	22	28	26	1.99
42148061--42148119	30	2.0	30	86	0	82	35	10	27	27	1.89
42151990--42152212	39	5.7	40	82	8	239	26	21	26	24	2.00
42168317--42168347	15	2.1	15	93	0	53	19	0	25	54	1.44
42168957--42169067	56	2.0	55	84	7	143	27	13	25	33	1.93
42169269--42169312	19	2.3	18	84	7	52	47	2	15	34	1.58
42176486--42176662	27	6.5	27	83	3	176	30	27	14	27	1.95
42176506--42176661	82	1.9	81	86	3	224	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42184669--42184846	27	6.6	27	84	3	205	29	28	15	26	1.96
42184690--42184845	82	1.9	81	88	3	233	29	28	15	26	1.96
42194797--42194852	28	2.0	28	100	0	112	28	21	28	21	1.99
42204396--42204437	11	4.1	11	76	17	54	30	2	16	50	1.58
42204407--42204447	19	2.2	19	100	0	82	26	4	14	53	1.61
42206344--42206521	27	6.6	27	84	3	205	29	28	15	26	1.96
42206365--42206520	82	1.9	81	88	3	233	29	28	15	26	1.96
42220877--42220950	3	24.3	3	72	5	51	36	4	2	56	1.32
42221004--42221059	22	2.5	22	80	11	69	21	7	0	71	1.09
42221429--42221465	13	2.9	13	88	4	58	21	2	0	75	0.92
42224265--42224385	39	3.1	39	91	0	188	13	25	21	39	1.90
42226736--42226792	27	2.1	27	83	6	71	33	15	29	21	1.94
42226745--42226802	27	2.1	27	83	0	71	32	17	31	18	1.94
42231614--42231926	90	3.6	90	69	17	268	26	6	14	52	1.65
42231672--42231824	75	2.0	75	93	0	261	26	7	15	49	1.72
42234549--42234607	17	3.5	17	74	4	57	35	13	0	50	1.42
42234599--42234637	16	2.5	15	84	12	51	25	10	0	64	1.25
42234745--42234812	5	12.2	5	77	20	55	27	17	1	52	1.53
42234745--42234812	17	4.0	16	73	17	57	27	17	1	52	1.53
42234721--42234812	28	3.2	28	79	11	98	31	18	1	48	1.55
42234745--42234812	12	6.1	10	72	21	55	27	17	1	52	1.53
42234861--42234977	55	2.1	55	81	10	134	29	10	3	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42234942--42234989	22	2.2	22	88	7	71	25	6	0	68	1.12
42234942--42234989	23	2.2	21	85	7	60	25	6	0	68	1.12
42235286--42235376	15	6.1	15	71	19	64	24	8	3	63	1.38
42235371--42235454	29	2.9	30	82	5	100	25	14	3	57	1.53
42235360--42235467	29	3.7	29	79	8	96	24	13	2	59	1.48
42237133--42237238	25	4.4	24	70	11	74	62	3	6	27	1.37
42237326--42237387	11	5.2	12	74	16	58	67	3	1	27	1.15
42237326--42237397	23	3.1	23	75	13	76	65	4	1	29	1.20
42237326--42237441	27	4.7	26	72	14	77	65	6	0	27	1.22
42237319--42237439	26	4.9	25	66	25	69	65	4	1	28	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320