genome.fa.s12.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  122  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39838161--39838321	89	1.8	89	85	5	229	26	24	19	29	1.98
39838308--39838390	43	1.9	43	85	2	112	26	26	15	31	1.96
39838076--39840106	220	9.2	220	90	0	3112	28	22	17	31	1.96
39839041--39839201	89	1.8	87	85	7	227	26	24	18	30	1.98
39839188--39839270	43	1.9	43	82	2	103	26	27	15	30	1.96
39839701--39839861	89	1.8	89	86	5	238	26	24	18	30	1.98
39839920--39840251	89	3.8	87	77	10	341	28	22	16	31	1.96
39839911--39840283	177	2.1	177	90	0	584	29	22	16	31	1.96
39840317--39840477	89	1.8	89	87	2	245	29	22	16	31	1.96
39840094--39845463	220	24.3	220	84	6	3259	27	22	17	32	1.96
39840537--39840697	89	1.8	89	84	7	222	26	24	17	31	1.97
39840755--39840917	89	1.9	88	83	6	215	29	23	15	30	1.96
39841063--39841382	131	2.5	122	84	7	365	27	20	17	35	1.95
39841757--39841917	89	1.8	87	85	5	225	27	24	18	29	1.98
39841977--39842137	89	1.8	87	85	5	225	27	24	17	31	1.97
39842417--39842577	89	1.8	89	86	2	236	30	22	15	31	1.95
39842637--39842797	89	1.8	89	86	7	240	26	24	18	30	1.98
39842504--39844143	781	2.1	789	88	2	2480	27	22	17	32	1.96
39842724--39843923	561	2.1	569	87	3	1760	28	22	17	32	1.96
39843083--39843706	341	1.8	342	89	1	984	27	21	16	33	1.96
39844005--39844087	44	1.9	44	85	2	114	27	26	15	30	1.96
39844078--39844238	89	1.8	87	84	5	216	27	23	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39844518--39844678	89	1.8	89	86	2	236	30	22	15	31	1.95
39844885--39844967	43	1.9	43	82	2	103	26	27	15	30	1.96
39844958--39845118	89	1.8	87	84	5	216	29	24	14	31	1.95
39845265--39845584	131	2.5	125	82	8	337	26	22	16	35	1.95
39844605--39846244	781	2.1	787	89	2	2503	27	23	17	32	1.96
39844825--39846024	561	2.1	569	88	2	1783	27	22	17	32	1.96
39845045--39845810	341	2.2	348	86	4	1041	27	22	16	33	1.96
39845398--39847694	220	10.6	220	88	2	3283	27	22	17	32	1.96
39845959--39846119	89	1.8	89	88	5	247	26	25	18	29	1.98
39846179--39846339	89	1.8	87	84	5	216	27	23	17	31	1.97
39847211--39847605	200	2.0	200	93	0	682	27	22	16	33	1.95
39850987--39851197	40	5.3	40	81	2	230	25	22	26	25	2.00
39850987--39851170	79	2.3	81	84	3	248	26	23	26	24	2.00
39850987--39851201	79	2.7	80	80	7	235	25	23	26	25	2.00
39854405--39854532	28	4.5	28	86	6	168	28	12	26	32	1.93
39854405--39854532	57	2.2	57	87	2	177	28	12	26	32	1.93
39856462--39856531	7	9.9	7	80	11	63	2	14	0	82	0.77
39856469--39856534	9	6.7	9	73	23	53	3	13	0	83	0.76
39856462--39856531	13	4.9	15	73	16	67	2	14	0	82	0.77
39856462--39856534	11	6.4	12	75	17	59	2	13	0	83	0.75
39856462--39856533	22	3.3	22	82	9	85	2	13	0	83	0.76
39862101--39862166	19	3.2	21	87	6	64	36	19	9	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39862118--39862215	19	5.2	19	90	7	155	35	15	10	38	1.81
39862118--39862215	36	2.6	37	88	9	144	35	15	10	38	1.81
39865651--39865687	17	2.2	17	100	0	74	45	16	5	32	1.70
39869290--39869398	51	2.1	51	91	0	182	24	21	5	48	1.71
39871090--39871264	94	1.9	94	93	0	305	37	10	6	46	1.63
39875557--39875604	24	2.0	24	95	0	87	16	18	12	52	1.75
39876647--39876797	40	3.8	40	76	3	160	29	19	22	27	1.98
39876999--39877031	13	2.5	13	95	5	57	18	0	36	45	1.49
39877668--39877761	7	11.9	8	77	13	72	61	4	0	34	1.15
39877694--39877773	7	11.0	7	80	7	61	58	2	0	38	1.11
39877693--39877758	21	3.0	21	86	10	80	63	3	0	33	1.10
39882370--39882633	43	6.2	42	79	5	235	25	17	26	30	1.97
39882428--39882633	86	2.4	87	84	8	278	24	18	27	29	1.98
39886433--39886550	43	2.8	42	79	7	148	30	24	14	30	1.95
39890067--39890213	39	3.7	40	84	7	210	24	26	23	25	2.00
39900510--39900623	28	4.1	27	78	8	106	26	29	15	28	1.96
39905546--39905674	46	2.8	46	90	0	195	29	30	21	18	1.97
39905554--39905693	46	3.0	45	85	4	140	28	30	21	20	1.98
39913083--39913254	93	1.8	93	93	0	299	27	28	21	22	1.99
39913077--39913251	46	3.8	45	78	13	194	29	28	21	21	1.99
39934804--39934828	13	1.9	13	100	0	50	36	16	32	16	1.90
39935335--39935372	10	3.8	10	83	13	51	21	18	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39935312--39935372	20	3.0	20	83	9	63	27	14	27	29	1.95
39935336--39935373	20	1.9	20	94	0	67	18	18	34	28	1.95
39940732--39940760	13	2.2	13	100	0	58	27	0	10	62	1.28
39942323--39942366	22	2.0	22	90	0	70	27	29	4	38	1.76
39944592--39944641	18	2.8	18	87	0	73	58	0	28	14	1.37
39944585--39944664	24	3.3	24	76	0	97	60	0	27	12	1.33
39949736--39949804	11	5.7	11	71	18	57	13	15	11	59	1.61
39949735--39949805	25	2.9	25	93	4	119	15	15	11	57	1.65
39951890--39951928	18	2.2	18	85	0	51	61	2	23	12	1.43
39953327--39953354	4	7.0	4	100	0	56	25	0	0	75	0.81
39954985--39955032	20	2.4	20	67	0	51	33	18	27	20	1.96
39956674--39956705	12	2.7	12	95	0	55	18	21	0	59	1.38
39956687--39956748	27	2.3	27	83	10	74	9	19	1	69	1.25
39956711--39956830	12	10.0	12	69	19	63	8	17	3	70	1.25
39956689--39956747	14	4.3	14	74	16	52	10	16	1	71	1.22
39956709--39956816	6	17.7	6	69	9	67	6	17	3	72	1.21
39957851--39957910	14	4.8	13	73	18	56	6	11	6	75	1.19
39957852--39957910	25	2.4	25	91	5	93	5	11	6	76	1.14
39957901--39957949	13	3.5	13	82	15	62	16	6	2	75	1.09
39957852--39957962	24	4.4	24	73	17	84	10	10	4	73	1.22
39959376--39959423	20	2.4	20	67	0	51	33	18	27	20	1.96
39960689--39960741	23	2.4	22	76	20	56	69	1	18	9	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39961635--39961682	25	2.0	23	88	8	69	18	16	14	50	1.79
39962990--39963019	13	2.3	13	100	0	60	26	0	10	63	1.26
39964876--39964907	12	2.7	12	95	0	55	81	3	6	9	0.97
39964876--39964928	12	3.8	13	75	20	54	71	1	7	18	1.19
39970552--39970598	20	2.3	20	85	0	67	29	36	12	21	1.91
39971992--39972019	10	2.8	10	100	0	56	85	7	0	7	0.73
39972099--39972134	11	3.3	11	92	7	56	75	8	2	13	1.15
39973283--39973388	48	2.2	47	85	9	135	59	1	23	15	1.46
39974679--39974712	9	3.7	9	92	4	50	73	8	5	11	1.24
39979844--39979890	20	2.3	20	85	0	67	29	36	12	21	1.91
39983737--39983784	14	3.4	14	85	0	60	18	31	6	43	1.75
39988346--39988371	6	4.3	6	100	0	52	84	0	0	15	0.62
39988494--39988548	24	2.4	23	80	11	69	32	27	12	27	1.93
39988614--39988648	17	2.0	18	88	5	54	42	14	5	37	1.69
39988900--39988924	9	2.8	9	100	0	50	48	12	0	40	1.40
39990760--39990800	20	2.1	19	86	9	55	19	2	7	70	1.22
39990834--39990858	11	2.3	11	100	0	50	76	8	0	16	1.02
39990851--39990926	28	2.7	28	80	13	84	73	5	13	7	1.22
39993114--39993151	10	3.8	10	83	13	51	26	15	28	28	1.96
39993116--39993162	20	2.3	20	92	0	76	23	17	34	25	1.96
39994677--39994701	12	2.1	12	100	0	50	24	28	0	48	1.52
39995670--39995732	31	2.1	29	82	14	74	4	15	4	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39997240--39997277	10	3.8	10	83	13	51	26	15	28	28	1.96
39997242--39997288	20	2.3	20	92	0	76	23	17	34	25	1.96
39997539--39997730	12	15.7	12	67	19	58	66	2	19	11	1.34
39997627--39997716	27	3.3	27	76	15	96	68	1	18	11	1.25
39999800--39999838	11	3.4	11	86	13	60	15	0	7	76	0.99
39999807--39999840	13	2.6	13	100	0	68	11	0	5	82	0.83
40008334--40008366	12	2.8	12	100	0	66	12	9	0	78	0.95
40008680--40008742	21	3.0	21	88	2	90	30	3	33	33	1.74
40012480--40012538	27	2.2	26	88	8	84	40	18	10	30	1.84
40024415--40024449	13	2.6	14	95	4	63	14	5	5	74	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320