genome.fa.s12.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  150  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49404787--49404823	17	2.3	17	90	9	60	83	2	10	2	0.84
49405824--49406011	96	2.0	96	86	0	268	34	14	19	31	1.92
49408964--49409017	22	2.5	22	87	3	74	12	31	37	18	1.89
49410420--49410729	46	6.6	45	76	13	211	29	18	28	23	1.98
49410471--49410832	48	7.6	48	75	11	236	27	17	29	25	1.98
49418240--49418699	47	9.8	45	76	9	352	23	29	18	28	1.98
49418240--49418690	187	2.4	187	94	1	773	23	29	18	28	1.98
49418240--49418690	140	3.2	137	80	6	444	23	29	18	28	1.98
49430244--49430322	37	2.1	37	88	0	113	25	30	18	25	1.98
49430441--49430939	47	10.4	47	91	2	719	29	29	8	32	1.87
49444323--49444727	47	8.6	47	93	1	666	28	29	8	33	1.86
49444373--49444451	25	3.3	25	66	16	76	31	29	5	34	1.79
49447017--49447181	40	4.2	40	81	8	133	27	27	20	24	1.99
49447054--49447181	40	3.2	39	85	4	175	28	27	20	24	1.99
49447017--49447237	80	2.8	79	77	12	202	26	26	21	25	1.99
49451877--49452308	40	10.8	40	94	0	711	25	29	21	23	1.99
49453719--49454074	47	7.6	47	92	2	563	28	30	8	32	1.86
49453769--49453847	25	3.3	25	66	16	76	31	29	5	34	1.79
49461906--49461993	29	3.0	29	83	3	104	40	14	22	21	1.90
49471306--49471512	48	4.3	48	81	6	222	30	18	24	26	1.98
49471302--49471512	96	2.2	96	83	5	257	29	18	25	26	1.98
49477226--49477507	29	9.7	29	76	7	189	38	13	26	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49477294--49477509	116	1.9	117	87	2	319	39	11	26	21	1.88
49477262--49477507	29	8.4	29	80	2	217	39	12	26	21	1.89
49483990--49484027	20	1.9	20	88	0	58	18	13	31	36	1.89
49487217--49487253	18	2.0	19	85	15	51	72	5	16	5	1.21
49490735--49490907	49	3.6	49	92	3	287	34	7	27	30	1.84
49490735--49490904	47	3.5	47	91	4	268	34	7	27	30	1.85
49492500--49492684	79	2.3	81	82	7	218	24	22	27	25	2.00
49492501--49492684	40	4.6	39	81	9	194	25	22	27	25	2.00
49492553--49492717	79	2.1	79	82	6	192	26	21	26	25	1.99
49500351--49500535	79	2.3	81	83	7	227	24	22	27	24	2.00
49500352--49500535	40	4.6	40	82	9	207	25	22	27	24	2.00
49500404--49500568	79	2.1	79	83	6	201	26	21	27	24	1.99
49501902--49502336	47	9.3	47	93	0	699	32	8	29	28	1.88
49502455--49502599	37	3.9	37	92	0	227	22	20	32	24	1.98
49503834--49504145	40	7.8	40	90	0	489	26	21	26	25	2.00
49507914--49508511	47	12.6	47	94	1	998	33	8	29	29	1.87
49508630--49508774	37	3.9	37	93	0	236	22	20	31	24	1.98
49515215--49515239	13	1.9	13	100	0	50	40	24	4	32	1.73
49518481--49518656	90	1.9	96	87	10	267	34	5	27	32	1.80
49518520--49518696	97	1.8	94	81	9	214	32	9	28	30	1.88
49518808--49518881	35	2.1	34	90	7	114	25	17	33	22	1.96
49544431--49544675	49	4.9	49	84	3	328	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49544444--49544675	100	2.3	98	87	2	338	28	28	18	25	1.98
49545325--49545384	29	2.0	29	84	9	77	28	26	8	36	1.85
49546586--49546673	27	3.1	27	87	11	124	29	28	13	28	1.94
49550549--49550638	29	3.1	29	90	4	130	31	27	13	27	1.94
49554234--49554351	28	4.1	28	82	3	137	28	26	16	28	1.97
49554236--49554348	57	2.0	57	82	6	140	27	27	16	28	1.97
49555299--49555370	33	2.2	32	83	9	85	19	5	22	52	1.66
49556408--49556526	44	2.7	44	88	0	184	27	20	22	29	1.98
49561530--49561570	21	2.0	21	85	9	57	19	46	14	19	1.84
49594221--49594283	25	2.5	25	97	0	117	17	23	41	17	1.90
49595507--49595601	29	3.3	29	86	1	138	25	14	30	29	1.95
49595588--49596043	227	2.0	227	97	0	867	25	16	25	32	1.96
49604546--49604579	18	1.9	18	88	5	52	41	11	17	29	1.85
49613143--49613176	17	2.0	17	100	0	68	35	11	23	29	1.90
49614549--49614677	55	2.3	55	86	3	179	24	31	21	22	1.98
49615431--49615651	49	4.6	49	77	12	196	23	30	20	25	1.98
49615434--49615702	46	5.7	48	77	13	224	22	28	21	27	1.99
49615433--49615702	93	2.8	94	78	9	271	22	29	21	27	1.99
49616043--49616100	30	1.9	30	92	0	98	27	25	13	32	1.94
49625404--49625589	40	4.7	40	91	2	277	23	21	27	26	1.99
49630436--49630621	40	4.7	40	91	2	277	23	22	27	26	2.00
49630436--49630654	80	2.8	80	86	4	266	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49633570--49633647	39	2.0	39	94	0	138	37	21	14	26	1.92
49637236--49637417	28	6.5	28	91	1	276	33	27	12	26	1.92
49646118--49646284	46	3.7	45	77	11	178	29	28	19	22	1.98
49648640--49648715	15	5.2	15	72	12	68	56	17	14	11	1.67
49648622--49648681	29	2.0	30	90	3	95	60	18	11	10	1.58
49648638--49648706	14	4.7	15	74	13	72	57	14	15	11	1.64
49651632--49651804	46	3.7	46	73	10	172	30	26	19	23	1.98
49651637--49651807	93	1.8	93	88	0	261	29	27	19	23	1.98
49654606--49655952	673	2.0	673	99	0	2676	33	22	15	29	1.94
49663159--49663263	28	3.7	29	80	9	137	22	32	18	26	1.97
49663486--49663528	16	2.8	15	82	6	59	4	18	23	53	1.63
49667027--49667058	16	2.0	16	100	0	64	12	6	31	50	1.65
49678867--49678976	55	2.0	55	94	0	193	26	24	14	34	1.94
49686393--49686581	50	3.8	50	84	2	238	29	28	17	24	1.98
49692176--49692211	17	2.1	17	100	0	72	30	16	5	47	1.70
49704244--49704394	40	3.8	41	84	6	186	23	23	28	23	2.00
49704244--49704394	79	1.9	79	84	4	205	23	23	28	23	2.00
49724298--49724417	27	4.4	27	89	2	152	34	24	10	31	1.88
49724299--49724417	54	2.2	54	89	0	175	33	24	10	31	1.88
49725213--49725268	23	2.4	24	87	3	78	35	12	30	21	1.90
49727036--49727341	47	6.6	45	72	12	183	22	30	19	27	1.98
49727120--49727341	94	2.4	94	83	3	286	22	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49738359--49738499	40	3.6	39	84	8	180	24	27	21	26	1.99
49738359--49738518	39	4.1	40	89	4	220	25	26	21	26	1.99
49738359--49738518	79	2.0	79	85	7	218	25	26	21	26	1.99
49743327--49743504	27	6.6	27	83	3	205	26	15	28	29	1.96
49743328--49743483	82	1.9	81	88	3	233	26	15	28	29	1.96
49743324--49743504	82	2.2	81	83	2	229	27	15	27	29	1.96
49749439--49749581	40	3.6	39	87	8	193	23	27	23	25	2.00
49749439--49749598	79	2.0	79	88	7	236	25	27	21	25	2.00
49749439--49749598	39	4.1	40	91	4	238	25	27	21	25	2.00
49756614--49756765	27	5.6	27	92	3	232	27	13	28	30	1.94
49756614--49756765	55	2.8	55	92	0	241	27	13	28	30	1.94
49764586--49764737	27	5.6	27	92	3	232	27	13	28	30	1.94
49764586--49764737	55	2.8	55	92	0	241	27	13	28	30	1.94
49770359--49770432	23	3.4	23	66	21	68	40	6	16	36	1.75
49770354--49770442	42	2.1	42	100	0	178	40	6	16	35	1.75
49772911--49772973	33	1.9	33	86	0	90	23	26	23	25	2.00
49773128--49773179	28	1.9	27	84	7	70	38	23	21	17	1.93
49775057--49775118	31	2.0	32	84	9	83	35	19	22	22	1.96
49775839--49776059	27	8.2	27	86	0	316	26	18	17	37	1.93
49778331--49778392	31	2.0	32	87	3	90	35	19	24	20	1.96
49778338--49778478	67	2.0	67	85	5	183	31	21	29	18	1.97
49778408--49778459	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49779110--49779301	27	7.2	27	86	3	282	26	18	18	36	1.94
49779110--49779301	53	3.6	54	91	2	309	26	18	18	36	1.94
49783862--49783887	13	2.0	13	100	0	52	23	15	23	38	1.92
49786706--49786771	33	2.0	33	84	0	87	27	24	21	27	1.99
49806257--49806448	47	4.1	47	89	0	276	32	11	29	26	1.91
49806667--49806865	69	2.9	69	98	0	389	24	19	29	27	1.98
49806657--49806885	106	2.2	103	87	7	318	23	19	29	27	1.98
49806657--49806885	37	6.5	37	84	9	334	23	19	29	27	1.98
49807954--49807978	12	2.1	12	100	0	50	16	8	16	60	1.58
49808696--49809014	47	6.8	46	77	10	238	26	20	30	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320