genome.fa.s12.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  136  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44568131--44568163	16	1.9	18	88	11	52	33	24	0	42	1.55
44572194--44572297	38	2.7	39	73	7	104	30	27	20	21	1.98
44573394--44573437	17	2.4	18	88	7	63	13	9	4	72	1.24
44576692--44576744	3	17.7	3	100	0	106	33	0	0	66	0.92
44577138--44577176	19	2.1	19	100	0	78	43	0	5	51	1.24
44577142--44577186	19	2.4	19	88	7	65	44	0	2	53	1.13
44586594--44586663	28	2.5	28	80	2	95	31	30	14	24	1.94
44590467--44590557	29	3.2	29	80	6	89	28	27	14	29	1.95
44591900--44592024	46	2.7	46	94	0	214	20	23	28	28	1.99
44599318--44599380	7	9.0	7	79	17	69	30	1	1	66	1.10
44600933--44600974	20	2.1	20	86	8	59	52	7	7	33	1.56
44602868--44603024	43	3.7	43	82	3	192	21	17	29	31	1.96
44607939--44607964	13	2.0	13	100	0	52	15	23	38	23	1.92
44608739--44608896	48	3.1	52	80	10	171	38	11	22	27	1.88
44609161--44609257	28	3.4	28	78	5	97	32	16	21	28	1.95
44609237--44609479	111	2.2	111	88	2	371	29	18	25	27	1.98
44612437--44612522	40	2.2	39	83	6	111	36	34	13	15	1.87
44612447--44612522	40	1.9	40	88	0	116	35	34	14	15	1.88
44618609--44618648	20	2.0	20	90	5	62	40	17	10	32	1.83
44619431--44619506	40	1.9	40	86	0	107	35	32	14	17	1.90
44623292--44623379	44	2.0	44	100	0	176	13	18	20	47	1.82
44625074--44625098	6	4.2	6	100	0	50	0	32	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44627921--44627974	20	2.6	21	91	2	83	27	31	7	33	1.84
44631456--44631519	31	2.1	31	93	0	110	23	23	15	37	1.93
44631739--44631835	25	3.8	26	89	5	146	30	21	22	24	1.99
44631882--44631928	20	2.3	20	100	0	94	34	19	10	36	1.86
44645257--44645313	29	2.0	29	83	10	73	68	0	22	8	1.17
44647116--44647198	41	2.0	41	100	0	166	34	12	9	43	1.75
44655113--44655154	19	2.2	19	86	0	57	64	0	4	30	1.14
44662041--44662310	48	5.6	47	75	6	213	29	27	16	27	1.97
44662046--44662312	96	2.8	97	83	3	299	29	26	16	27	1.97
44662040--44662312	144	1.9	143	83	4	352	29	27	16	27	1.97
44664281--44664458	27	6.6	27	81	5	171	28	27	16	27	1.97
44667814--44667991	27	6.6	27	84	5	180	29	28	15	26	1.96
44667835--44667990	82	1.9	81	88	3	233	29	28	15	26	1.96
44675807--44675984	27	6.6	27	77	6	137	30	28	15	25	1.96
44675807--44675984	54	3.3	54	78	7	164	30	28	15	25	1.96
44695076--44695343	48	5.7	48	78	6	217	29	27	15	27	1.96
44695079--44695342	93	2.8	94	81	4	291	28	27	15	28	1.96
44695075--44695343	141	1.9	143	82	6	341	29	27	15	27	1.96
44697296--44697417	27	4.5	27	85	3	138	28	28	17	25	1.97
44697296--44697466	27	6.5	27	77	9	113	29	26	16	26	1.97
44700728--44700903	27	6.6	26	78	8	131	29	28	15	26	1.96
44700728--44700902	54	3.3	54	79	9	171	29	29	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44700749--44700902	81	1.9	80	86	4	220	29	29	15	25	1.96
44708728--44708905	27	6.6	27	84	5	180	29	28	15	26	1.96
44708749--44708904	82	1.9	81	88	3	233	29	28	15	26	1.96
44713116--44713233	42	2.8	42	84	6	141	31	14	21	33	1.93
44718996--44719031	18	2.0	18	94	0	63	41	5	13	38	1.68
44720668--44720766	43	2.3	42	86	3	144	29	15	26	29	1.96
44722407--44722472	28	2.4	28	92	0	105	18	45	18	18	1.86
44723467--44723598	49	2.7	49	83	5	151	19	28	25	27	1.99
44727298--44727383	45	1.9	45	100	0	172	41	18	13	25	1.88
44731461--44731585	48	2.7	46	85	5	144	22	25	20	31	1.98
44733218--44733275	30	1.9	30	85	0	80	41	5	24	29	1.76
44737841--44738324	47	10.1	47	86	5	630	32	11	29	26	1.92
44737841--44738324	98	5.0	96	89	5	671	32	11	29	26	1.92
44737841--44738324	149	3.3	144	87	4	681	32	11	29	26	1.92
44738135--44738209	23	3.2	23	62	23	57	29	10	32	28	1.90
44738066--44738333	93	2.8	92	87	5	279	33	13	29	24	1.93
44738550--44738664	37	3.1	37	86	3	115	23	20	30	26	1.98
44738580--44738682	37	2.8	37	92	0	161	24	20	29	26	1.99
44740321--44740402	24	3.6	23	72	24	84	39	9	4	46	1.58
44740348--44740409	19	3.0	19	68	28	54	37	9	4	48	1.57
44740324--44740409	43	2.0	43	97	0	163	38	9	4	47	1.56
44740594--44740627	17	2.0	17	88	11	52	61	5	0	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44741158--44741197	21	2.0	20	90	5	62	32	15	15	37	1.88
44743075--44743125	26	2.0	26	100	0	102	33	3	3	58	1.35
44748138--44748410	47	5.8	45	71	17	173	28	16	29	25	1.97
44755802--44756011	46	4.5	46	77	8	203	25	20	31	22	1.98
44758576--44758625	21	2.4	21	96	0	91	18	34	28	20	1.95
44762215--44762385	46	3.7	46	79	6	184	27	19	29	23	1.98
44764562--44764733	52	3.5	49	85	7	222	29	27	13	28	1.95
44768157--44768294	44	3.2	42	82	7	109	31	24	18	24	1.98
44768133--44768294	43	3.8	41	78	8	146	32	25	18	24	1.97
44779488--44779584	40	2.5	40	94	3	171	34	18	2	45	1.61
44784404--44784445	15	2.8	15	92	0	66	11	19	14	54	1.70
44784403--44784451	15	3.3	15	83	8	55	10	20	14	55	1.68
44786861--44787037	46	3.9	44	73	11	149	23	19	26	31	1.98
44786858--44787029	93	1.8	93	86	0	245	22	19	27	30	1.98
44789869--44789906	14	2.7	15	84	12	53	68	5	5	21	1.29
44806508--44806567	30	2.0	30	90	0	93	28	25	8	38	1.84
44811809--44811850	21	2.0	21	85	0	57	21	16	42	19	1.89
44823333--44823397	28	2.3	28	92	5	105	33	29	7	29	1.85
44823503--44823565	28	2.2	29	86	8	85	22	20	23	33	1.97
44823513--44823576	28	2.2	28	83	2	74	25	23	18	32	1.97
44832977--44833055	38	2.1	37	86	6	106	26	30	17	25	1.97
44833174--44833514	47	7.2	47	91	2	520	29	31	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44840008--44840033	13	2.0	13	100	0	52	23	30	23	23	1.99
44850336--44850442	37	2.9	37	90	0	160	26	30	19	23	1.98
44850589--44851141	48	11.1	48	85	8	696	32	26	5	35	1.80
44850920--44850949	11	2.7	11	100	0	60	40	23	0	36	1.55
44854592--44855818	40	30.7	40	85	0	1509	28	28	19	23	1.98
44857074--44857180	37	2.9	37	94	0	178	25	32	19	22	1.97
44857334--44857815	98	4.9	98	87	3	700	31	26	6	35	1.81
44857334--44857815	50	9.8	49	87	4	661	31	26	6	35	1.81
44861866--44861916	21	2.4	21	86	0	75	19	23	37	19	1.94
44869321--44869498	27	6.6	27	83	3	205	26	15	28	29	1.96
44869322--44869477	82	1.9	81	88	3	233	26	15	28	29	1.96
44869318--44869498	82	2.2	81	83	2	229	27	15	27	29	1.96
44885054--44885276	46	4.8	46	75	13	156	24	30	17	27	1.97
44890048--44890354	47	6.6	46	72	11	207	28	19	29	23	1.98
44890046--44890215	46	3.7	45	79	9	198	25	21	30	22	1.99
44890046--44890354	140	2.2	139	80	10	337	28	19	29	23	1.98
44896479--44896702	39	5.7	40	83	8	257	25	22	27	25	2.00
44896479--44896702	79	2.8	79	82	10	251	25	22	27	25	2.00
44896480--44896702	40	5.6	39	82	9	208	25	22	27	25	2.00
44896532--44896735	79	2.6	79	80	8	195	26	21	27	24	1.99
44900662--44900972	47	6.7	46	69	11	195	27	20	27	23	1.99
44900662--44900871	92	2.3	94	81	5	239	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44905052--44905276	49	4.5	49	85	2	279	26	17	26	28	1.98
44905050--44905276	99	2.3	100	86	2	305	26	18	26	28	1.98
44907976--44908015	7	5.7	7	100	0	80	42	12	0	45	1.42
44910943--44911038	32	2.9	33	81	10	115	26	25	23	25	2.00
44915904--44916015	41	2.7	42	81	10	115	28	27	17	25	1.98
44915941--44916046	41	2.5	42	80	7	115	33	26	16	24	1.96
44915983--44916073	45	2.0	44	81	6	103	34	21	16	27	1.95
44920478--44921164	126	5.5	126	89	1	1013	27	18	16	37	1.92
44921290--44921362	17	4.4	17	79	6	87	52	30	0	17	1.46
44921287--44921362	32	2.3	34	86	6	104	53	28	0	17	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320