genome.fa.s12.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  115  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37380006--37380176	81	2.1	80	78	3	189	36	7	23	33	1.82
37383170--37383226	25	2.3	25	100	0	114	26	26	15	31	1.96
37383170--37383261	25	3.7	25	87	8	107	26	22	20	30	1.98
37383220--37383276	25	2.3	24	82	11	71	21	22	26	29	1.99
37384979--37385018	20	2.0	20	85	5	53	42	5	27	25	1.75
37393874--37393963	29	3.2	29	85	3	121	30	31	14	24	1.95
37394178--37394214	16	2.3	16	90	0	56	13	13	16	56	1.67
37403673--37403748	22	3.3	22	66	16	64	32	10	30	26	1.90
37403670--37404197	47	11.3	47	94	0	898	34	8	29	27	1.87
37404000--37404075	22	3.3	22	64	10	62	31	11	31	25	1.91
37406426--37406457	16	2.0	16	93	0	55	9	25	25	40	1.85
37414674--37414844	93	1.8	93	92	0	288	28	28	21	22	1.99
37414666--37414841	46	3.8	46	75	12	189	28	28	20	22	1.98
37414718--37414860	46	3.1	45	75	15	123	28	27	19	23	1.98
37423805--37423832	13	2.2	13	100	0	56	14	32	35	17	1.90
37426517--37426694	27	6.6	27	84	3	205	29	28	15	26	1.96
37426538--37426693	82	1.9	81	88	3	233	29	28	15	26	1.96
37427176--37427201	12	2.2	12	100	0	52	42	0	7	50	1.31
37434623--37434800	27	6.6	27	84	3	205	29	28	15	26	1.96
37434644--37434799	82	1.9	81	88	3	233	29	28	15	26	1.96
37435282--37435307	12	2.2	12	100	0	52	42	0	7	50	1.31
37446981--37447170	41	4.7	41	85	1	240	25	14	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37446978--37447170	81	2.4	82	84	1	246	25	15	25	33	1.95
37449224--37449302	37	2.1	37	88	0	113	25	32	17	24	1.97
37449420--37449856	47	9.2	47	90	2	649	29	30	8	31	1.87
37449420--37449856	96	4.6	94	90	2	649	29	30	8	31	1.87
37449420--37449856	143	3.1	141	90	3	694	29	30	8	31	1.87
37453204--37453455	40	6.3	40	79	9	214	25	27	20	26	1.99
37453204--37453455	80	3.2	78	79	9	242	25	27	20	26	1.99
37453745--37453823	29	2.7	29	86	5	106	27	32	15	24	1.95
37453805--37453992	43	4.4	43	96	0	340	26	34	16	22	1.95
37455837--37455915	37	2.1	37	88	0	113	25	30	18	25	1.98
37456033--37456422	47	8.2	47	88	2	564	29	30	8	31	1.87
37456033--37456422	96	4.1	94	90	2	582	29	30	8	31	1.87
37470614--37470653	21	2.0	21	90	5	64	10	37	30	22	1.87
37489589--37489709	43	2.9	42	76	7	127	28	16	26	28	1.97
37489589--37489717	42	3.0	42	77	6	134	28	16	27	27	1.97
37491038--37491085	20	2.4	20	96	0	87	16	22	35	25	1.95
37498430--37498553	46	2.7	46	87	2	169	31	20	24	24	1.98
37498562--37498693	48	2.7	50	87	6	173	27	15	31	25	1.96
37506406--37506639	45	5.3	45	79	8	187	30	26	17	26	1.97
37510144--37510326	79	2.3	81	84	7	232	24	22	27	25	2.00
37510145--37510328	40	4.6	40	83	9	216	23	22	28	25	2.00
37510197--37510361	79	2.1	79	84	6	210	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37527382--37527441	31	1.9	31	100	0	120	15	33	11	40	1.83
37531209--37531269	30	2.0	30	96	0	113	19	13	32	34	1.90
37542776--37542963	50	3.8	50	76	6	184	26	17	26	30	1.97
37558063--37558122	27	2.2	27	81	0	66	26	13	25	35	1.93
37562209--37562269	31	2.0	31	93	0	104	24	24	16	34	1.95
37562478--37562561	26	3.4	25	80	8	91	28	22	21	27	1.99
37562609--37562655	20	2.3	20	100	0	94	34	19	10	36	1.86
37569854--37570074	40	5.6	40	88	3	322	22	22	27	28	1.99
37577918--37578015	40	2.5	40	91	5	155	24	24	28	22	1.99
37578243--37578284	22	1.9	22	85	9	59	33	9	14	42	1.78
37581506--37581547	20	2.2	20	82	4	50	35	2	19	42	1.64
37582060--37582177	46	2.5	46	80	5	130	28	16	29	25	1.96
37582197--37582315	44	2.6	46	88	5	161	26	21	29	22	1.99
37606576--37606702	28	4.5	28	97	0	236	33	28	12	25	1.93
37610882--37611066	40	4.6	40	82	0	235	24	25	23	25	2.00
37625661--37625806	40	3.7	40	88	0	211	31	26	18	23	1.97
37627191--37627216	12	2.2	12	100	0	52	50	7	0	42	1.31
37627702--37627879	27	6.6	27	82	3	196	26	14	28	29	1.95
37627703--37627858	82	1.9	81	86	3	224	26	14	28	29	1.95
37627699--37627879	82	2.2	81	82	2	220	27	14	28	29	1.96
37635294--37635319	12	2.2	12	100	0	52	50	7	0	42	1.31
37635799--37635976	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37635800--37635955	82	1.9	81	88	3	233	26	15	28	29	1.96
37635796--37635976	82	2.2	81	83	2	229	27	15	27	29	1.96
37640021--37640234	107	2.0	107	98	0	410	33	22	18	25	1.97
37642639--37642856	72	2.9	76	84	8	234	34	16	19	29	1.94
37642480--37642856	153	2.4	153	78	5	393	31	15	19	32	1.94
37642712--37643127	86	4.8	87	80	11	430	29	18	18	34	1.95
37643023--37643052	13	2.3	13	94	0	51	16	10	6	66	1.41
37642712--37643127	172	2.4	172	86	3	581	29	18	18	34	1.95
37643757--37643806	19	2.8	18	77	19	59	40	48	2	10	1.48
37667228--37667411	40	4.7	40	80	8	191	25	26	22	26	2.00
37667228--37667409	79	2.3	81	79	11	191	24	26	21	26	2.00
37674373--37674410	14	2.7	14	95	0	67	84	0	15	0	0.63
37678860--37679547	344	2.0	344	94	0	1207	26	23	15	33	1.95
37684231--37684631	198	2.0	199	95	1	725	27	8	16	47	1.75
37686543--37686592	6	7.8	6	95	4	73	68	0	16	16	1.22
37686543--37686589	7	7.1	7	97	2	73	70	0	14	14	1.18
37686543--37686592	13	3.8	13	92	7	84	68	0	16	16	1.22
37688365--37688492	46	2.8	45	79	7	132	23	31	19	25	1.98
37690406--37690465	29	2.1	29	90	0	93	30	23	13	33	1.93
37692020--37692143	43	3.0	41	77	10	117	25	17	26	30	1.97
37696832--37697030	99	2.0	99	100	0	398	33	12	20	34	1.89
37697056--37697103	23	2.1	23	100	0	96	39	14	16	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37699964--37700135	40	4.3	40	88	2	222	25	27	21	25	1.99
37699966--37700188	40	5.6	39	83	5	216	25	27	21	25	1.99
37699964--37700188	80	2.8	79	80	7	240	25	27	21	25	1.99
37700120--37700197	40	1.9	41	82	10	97	26	28	20	24	1.99
37707874--37708045	40	4.3	40	88	2	222	25	27	21	25	1.99
37707874--37708088	80	2.7	79	79	5	227	26	27	20	25	1.99
37714597--37714750	39	3.9	39	90	1	220	27	27	21	23	1.99
37714581--37714725	78	1.9	78	85	0	200	26	27	20	24	1.99
37716793--37716830	20	2.0	19	90	10	60	73	7	7	10	1.24
37726991--37727043	23	2.3	23	83	6	72	18	16	33	30	1.94
37736445--37736487	23	1.9	23	90	4	70	23	51	4	20	1.66
37736697--37736775	26	3.0	26	94	1	131	31	16	21	30	1.95
37741736--37741874	23	6.2	23	75	17	105	33	17	25	23	1.96
37741736--37741862	45	2.8	45	79	13	154	33	17	25	24	1.96
37741728--37741882	23	6.7	22	77	8	98	34	16	25	23	1.96
37748921--37749050	50	2.6	49	89	3	181	30	29	16	23	1.97
37751458--37751528	34	2.1	34	94	0	124	45	11	18	25	1.82
37770817--37770848	13	2.4	14	94	5	57	71	6	0	21	1.07
37777728--37777905	46	3.8	46	79	7	198	28	27	20	23	1.99
37777736--37777906	93	1.8	93	89	2	272	27	28	21	23	1.99
37783517--37783688	93	1.8	93	90	2	274	27	29	20	22	1.99
37783512--37783684	46	3.7	46	74	14	176	28	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37786084--37786124	15	2.7	16	81	7	50	56	9	19	14	1.66
37787633--37787895	40	6.5	40	89	5	363	23	28	22	24	1.99
37790687--37790737	24	2.1	24	100	0	102	43	33	7	15	1.76
37811363--37811401	19	2.1	19	85	0	51	71	7	5	15	1.26
37811867--37811936	27	2.5	28	83	4	79	34	20	24	21	1.97
37811867--37811956	27	3.2	27	76	7	74	32	21	24	22	1.98
37812062--37812126	28	2.3	28	91	0	103	30	9	27	32	1.88
37820181--37820214	8	4.1	8	96	3	59	14	0	23	61	1.33
37825307--37825575	40	6.7	40	97	0	493	21	27	20	30	1.98
37833891--37834159	40	6.7	40	97	0	493	21	27	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320