genome.fa.s12.2.7.7.80.10.50.1000.223.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  223  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74286284--74286356	35	2.0	39	84	10	100	35	21	19	23	1.96
74287483--74287539	9	5.9	9	77	16	53	73	7	19	0	1.05
74288461--74288591	40	3.3	39	75	11	124	26	19	24	29	1.98
74290037--74290165	22	5.8	22	79	6	125	24	26	14	34	1.94
74290059--74290165	44	2.4	45	85	1	144	26	27	14	32	1.94
74290027--74290165	45	3.1	44	80	4	145	25	25	15	33	1.95
74291350--74291829	242	2.0	241	93	0	825	30	8	20	40	1.83
74297864--74297968	22	4.7	22	82	3	120	21	23	17	37	1.94
74297860--74297968	45	2.4	46	83	6	143	23	22	17	35	1.95
74301652--74301723	31	2.3	30	90	6	117	9	11	1	77	1.05
74301655--74301707	14	3.6	14	74	16	54	9	9	1	79	1.02
74301757--74301828	10	6.8	10	72	17	56	12	4	4	79	1.02
74301774--74301819	24	1.9	24	82	8	58	10	4	6	78	1.08
74301989--74302015	14	1.9	14	100	0	54	44	0	0	55	0.99
74301874--74302015	37	4.0	37	76	11	129	40	1	2	56	1.20
74301974--74302015	21	1.9	23	85	9	61	45	0	0	54	0.99
74302067--74302109	21	2.0	22	86	13	63	27	6	0	65	1.18
74302210--74302251	18	2.3	19	83	4	50	16	7	2	73	1.15
74302234--74302304	18	3.9	17	74	13	52	25	2	1	70	1.09
74302322--74302458	33	4.0	34	77	15	106	35	1	2	59	1.21
74302397--74302481	24	3.5	25	73	24	83	38	0	5	55	1.24
74302516--74302548	13	2.5	14	90	9	52	27	3	0	69	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74302670--74302708	20	2.0	20	94	0	69	43	0	0	56	0.99
74302844--74302902	26	2.2	26	87	3	82	49	5	1	44	1.34
74302961--74303004	21	2.1	21	84	16	56	36	2	0	61	1.09
74304767--74304813	20	2.3	20	86	13	62	70	0	6	23	1.10
74305133--74305210	5	14.8	5	75	18	52	79	2	10	7	1.02
74305132--74305212	31	2.5	34	82	13	116	79	2	11	7	1.03
74318018--74318049	3	10.7	3	93	0	55	37	0	28	34	1.57
74318425--74318468	23	1.9	23	90	0	70	34	0	4	61	1.16
74324502--74324634	67	2.0	67	91	2	214	23	15	30	30	1.95
74326997--74327045	22	2.2	22	78	7	55	67	6	6	20	1.35
74333770--74333990	92	2.4	92	89	0	325	19	23	14	42	1.88
74333770--74333997	46	5.0	46	87	1	287	20	23	14	41	1.89
74338815--74338869	26	2.1	26	83	6	67	21	1	5	70	1.16
74346003--74346039	13	2.6	15	83	12	51	59	2	0	37	1.12
74345993--74346037	22	2.0	22	83	8	56	64	2	0	33	1.06
74347682--74347944	87	3.0	87	82	6	293	36	18	17	27	1.93
74347839--74347873	14	2.5	14	90	0	52	60	0	14	25	1.35
74347719--74347944	87	2.6	86	86	3	294	34	18	17	29	1.94
74347857--74348020	74	2.2	73	86	5	224	37	18	17	26	1.93
74347804--74348600	163	4.8	163	80	10	777	36	18	17	27	1.93
74348163--74348196	14	2.4	14	95	0	59	58	5	17	17	1.57
74348128--74348601	85	5.5	90	76	12	356	36	17	17	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74348313--74348604	86	3.5	83	80	10	242	38	17	15	28	1.90
74348390--74348600	86	2.5	85	86	3	284	37	17	16	28	1.91
74348510--74348540	14	2.2	14	94	0	53	67	0	9	22	1.19
74348113--74348600	171	2.8	175	76	12	472	36	18	18	27	1.94
74349153--74349224	36	2.0	36	94	0	126	43	12	26	18	1.85
74361741--74361777	14	2.6	15	83	12	51	56	2	0	40	1.13
74361732--74361774	22	2.0	22	81	9	52	60	2	0	37	1.10
74362350--74362379	15	2.1	15	93	6	53	20	0	3	76	0.92
74369688--74369749	23	2.6	24	89	5	83	37	0	9	53	1.34
74369702--74369749	23	2.1	23	100	0	96	39	0	8	52	1.32
74374737--74374795	19	3.0	20	77	20	61	62	6	6	23	1.44
74378583--74378885	150	2.0	150	100	0	606	30	23	5	41	1.76
74379793--74379839	23	2.0	23	91	0	76	44	14	2	38	1.58
74379797--74379846	23	2.2	23	85	0	64	50	12	2	36	1.51
74382147--74382191	22	2.0	22	95	0	81	35	13	24	26	1.92
74384164--74384215	25	2.1	25	85	0	68	36	9	15	38	1.80
74385379--74385471	37	2.4	36	78	16	91	51	5	0	43	1.24
74385315--74385453	68	2.0	71	83	5	176	50	5	1	42	1.35
74390078--74390139	24	2.7	23	80	11	65	62	9	3	24	1.40
74390581--74390638	26	2.3	26	84	3	82	51	0	0	48	1.00
74390653--74390747	25	3.4	27	68	28	74	44	1	1	53	1.14
74395076--74395103	14	2.0	14	100	0	56	50	7	7	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74396576--74396738	41	4.0	40	79	11	143	26	25	19	28	1.99
74404121--74404290	41	4.1	42	78	8	161	27	25	18	28	1.98
74408863--74408902	14	2.9	14	84	0	53	42	17	7	32	1.77
74408828--74408894	34	1.9	35	87	3	100	44	13	10	31	1.77
74414514--74414554	21	1.9	22	85	5	57	41	9	14	34	1.79
74420249--74420458	105	2.0	106	98	0	404	39	12	10	37	1.78
74421216--74421260	23	1.9	24	86	4	65	26	2	4	66	1.22
74424909--74424938	5	5.8	5	92	7	51	16	0	0	83	0.65
74428922--74428966	23	2.0	23	82	8	56	66	0	4	28	1.11
74433093--74433122	13	2.3	13	94	0	51	16	3	0	80	0.85
74433108--74433154	19	2.4	20	80	20	55	25	4	2	68	1.19
74434827--74434859	17	1.9	18	88	11	52	45	0	12	42	1.41
74436022--74436052	4	7.8	4	100	0	62	51	0	0	48	1.00
74438000--74438217	104	2.1	104	93	0	373	16	27	25	29	1.97
74439777--74439828	13	3.9	13	76	18	54	76	1	1	19	0.97
74439776--74439830	6	8.7	6	80	20	51	76	1	1	20	0.97
74446221--74446283	27	2.3	26	76	10	63	50	11	0	38	1.38
74446250--74446279	15	2.0	15	93	0	51	40	10	0	50	1.36
74447787--74447904	51	2.2	53	85	4	150	17	22	20	39	1.92
74448025--74448083	18	3.3	18	78	0	55	38	13	15	32	1.86
74448118--74448174	18	3.2	18	78	9	62	35	7	19	38	1.79
74450250--74450288	20	2.0	20	94	0	69	23	38	28	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74456108--74456172	20	3.2	20	76	8	69	32	18	30	18	1.95
74462574--74462614	21	2.0	21	90	0	64	51	21	12	14	1.75
74462599--74462731	42	3.2	42	75	0	140	45	16	20	18	1.86
74462599--74462731	21	6.3	21	68	3	88	45	16	20	18	1.86
74463970--74464019	5	10.0	5	100	0	100	60	0	0	40	0.97
74464087--74464111	13	1.9	13	100	0	50	76	0	24	0	0.80
74464670--74464732	30	2.1	30	88	5	92	60	9	3	26	1.43
74474562--74474595	17	2.0	17	94	0	59	14	14	47	23	1.82
74474664--74474699	17	2.1	18	94	5	65	13	30	44	11	1.79
74474671--74474748	31	2.5	31	87	0	102	19	29	35	15	1.92
74474666--74474733	18	4.1	17	71	19	63	17	29	38	14	1.90
74477861--74477894	17	1.9	17	88	5	50	55	26	0	17	1.42
74489891--74489946	27	2.1	27	100	0	112	0	7	25	67	1.15
74491180--74491225	24	1.9	24	86	8	67	36	2	2	58	1.22
74491633--74491666	12	2.8	12	83	16	52	41	0	5	52	1.25
74491716--74491752	18	2.1	18	89	0	56	43	0	2	54	1.14
74493112--74493151	13	3.2	13	86	13	57	47	0	25	27	1.52
74493124--74493164	19	2.2	19	87	12	59	46	0	24	29	1.53
74496925--74496958	6	5.7	6	90	10	52	14	2	0	82	0.79
74499640--74499685	19	2.4	19	92	0	83	21	39	23	15	1.92
74506135--74506195	27	2.3	26	83	8	86	37	14	21	26	1.92
74506254--74506307	27	2.0	28	82	7	67	31	16	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74506722--74506748	8	3.4	8	100	0	54	0	22	22	55	1.44
74509527--74509573	6	7.7	6	93	6	69	14	4	0	80	0.85
74510291--74510336	18	2.6	18	86	3	58	15	23	43	17	1.87
74512401--74512435	17	2.1	17	88	0	52	42	17	11	28	1.83
74513334--74513384	22	2.3	22	80	12	59	37	19	23	19	1.94
74513334--74513399	23	2.9	23	84	6	73	34	18	24	22	1.96
74517325--74517370	23	2.0	23	100	0	92	26	34	8	30	1.86
74521246--74521293	20	2.4	19	80	10	51	33	8	10	47	1.68
74526593--74526715	25	5.0	25	83	3	133	21	27	20	30	1.98
74526785--74526908	25	5.0	25	83	7	137	21	25	19	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320