Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  305  of  320  ( 38372 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97283890--97283934
23
2.0
23
86
8
65
4
4
20
71
1.21
97295021--97295162
69
2.1
68
98
1
275
29
7
18
45
1.76
97303428--97303478
15
3.5
15
70
5
50
31
0
7
60
1.25
97305084--97305182
49
2.0
49
96
0
180
14
14
43
28
1.84
97313194--97313218
11
2.3
11
100
0
50
56
0
8
36
1.29
97313971--97314009
18
2.1
18
85
9
51
38
0
5
56
1.22
97320226--97320266
21
2.0
21
90
0
64
29
21
29
19
1.98
97324915--97324958
17
2.5
17
81
3
52
72
2
6
18
1.17
97329344--97329384
2
20.5
2
84
0
55
0
41
2
56
1.13
97329344--97329384
12
3.2
12
87
12
64
0
41
2
56
1.13
97338367--97338403
12
3.0
13
84
11
51
29
40
18
10
1.85
97342733--97342776
18
2.4
18
84
0
61
31
13
15
38
1.87
97342902--97343022
53
2.3
53
88
2
181
42
23
16
17
1.88
97343061--97343085
12
2.1
12
100
0
50
40
20
24
16
1.91
97343153--97343249
48
2.0
48
100
0
194
28
20
20
29
1.98
97350894--97350946
19
2.6
21
82
14
58
56
0
0
43
0.99
97353377--97353463
29
2.9
30
93
1
140
29
47
3
19
1.66
97353375--97353507
30
4.5
29
82
2
149
27
46
4
21
1.70
97354002--97354131
25
5.5
23
70
15
72
34
4
3
57
1.35
97354077--97354211
25
5.2
27
73
11
86
34
6
4
54
1.46
97354096--97354143
15
3.3
15
80
13
55
35
2
2
60
1.20
97354087--97354164
31
2.5
31
81
6
79
33
5
3
57
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97354169--97354217
25
2.0
25
91
0
80
34
8
6
51
1.57
97354372--97354419
16
3.1
15
90
6
69
31
2
2
64
1.16
97354372--97354423
8
6.5
8
82
8
61
30
1
1
65
1.14
97359329--97359551
84
2.7
83
78
6
229
50
6
13
29
1.68
97363602--97363630
3
9.7
3
100
0
58
31
0
0
68
0.89
97366910--97366973
12
5.3
12
74
18
62
43
0
4
51
1.22
97366936--97366988
18
3.1
18
78
18
67
41
0
3
54
1.18
97366910--97366988
37
2.3
37
85
14
107
43
0
5
51
1.23
97371250--97371296
17
2.8
17
80
6
51
27
0
12
59
1.34
97371895--97371937
11
4.0
11
78
6
52
20
44
4
30
1.72
97372475--97372543
18
3.8
18
92
0
111
28
26
14
30
1.95
97376390--97376432
11
4.0
11
78
6
52
20
44
4
30
1.72
97379546--97379600
22
2.5
22
84
3
65
69
7
20
3
1.28
97381123--97381184
21
2.8
23
78
7
83
14
19
24
41
1.88
97386968--97387006
20
2.0
20
100
0
78
35
12
20
30
1.90
97387057--97387153
25
4.0
24
90
5
142
30
21
21
25
1.98
97387056--97387153
49
2.0
49
90
7
155
30
22
21
25
1.99
97388157--97388520
182
2.0
182
97
0
683
35
21
14
28
1.92
97388691--97388734
22
2.0
22
100
0
88
13
36
22
27
1.92
97394885--97395046
83
2.0
83
94
0
288
38
20
20
20
1.93
97395276--97395389
51
2.2
51
93
0
192
34
14
22
28
1.93
97396396--97396445
13
3.9
13
80
12
50
76
2
8
14
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97396486--97396521
4
9.0
4
100
0
72
75
0
25
0
0.81
97404071--97404115
6
7.7
6
85
5
65
80
2
2
15
0.92
97405638--97405668
16
1.9
16
93
0
53
41
0
3
54
1.16
97405748--97405789
12
3.6
12
87
3
59
76
0
21
2
0.90
97406755--97406811
15
3.9
15
88
2
89
35
0
12
52
1.39
97407183--97407269
21
4.0
23
80
10
92
14
21
25
37
1.92
97410878--97410927
21
2.4
21
100
0
100
20
22
28
30
1.98
97411509--97411581
3
24.7
3
89
8
114
32
2
0
64
1.08
97412747--97412843
40
2.5
38
81
8
117
17
24
27
29
1.97
97413176--97413208
13
2.5
13
95
5
57
33
0
18
48
1.48
97413739--97413796
20
2.9
20
86
0
89
18
34
32
13
1.91
97416000--97416043
22
2.0
22
82
13
54
25
11
4
59
1.51
97416480--97416605
31
4.2
31
73
16
120
46
11
15
26
1.79
97416515--97416596
27
2.9
27
71
14
67
47
10
15
25
1.78
97442780--97442825
16
2.9
16
78
12
51
45
0
2
52
1.13
97442686--97442943
120
2.1
120
98
0
498
43
2
5
49
1.38
97442900--97442941
15
2.7
16
82
14
52
45
0
2
52
1.13
97442891--97442932
15
2.9
15
82
10
52
47
0
0
52
1.00
97443069--97443173
44
2.5
40
76
15
113
31
29
4
34
1.78
97443067--97443176
45
2.6
44
81
8
131
31
29
5
33
1.80
97443155--97443192
16
2.4
16
95
0
67
28
31
0
39
1.57
97443960--97444009
21
2.4
21
77
12
57
68
10
0
22
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97445298--97445357
17
3.3
18
84
9
61
70
1
3
25
1.12
97445309--97445357
17
2.8
17
90
3
71
71
0
4
24
1.03
97453850--97453924
23
3.3
23
86
3
116
32
26
21
20
1.97
97459354--97459411
29
2.0
30
86
3
82
36
12
6
44
1.68
97467803--97467831
14
2.0
15
93
6
51
55
0
0
44
0.99
97471232--97471297
26
2.5
27
76
18
75
51
1
0
46
1.10
97471585--97471619
13
2.7
13
95
0
61
22
8
25
42
1.82
97472219--97472244
3
8.7
3
100
0
52
0
34
30
34
1.58
97473643--97473813
72
2.4
71
84
4
236
54
13
7
25
1.64
97474240--97474285
18
2.6
18
92
0
74
43
13
8
34
1.74
97476578--97476633
27
2.1
27
100
0
112
51
0
19
28
1.47
97481030--97481111
42
2.0
41
82
2
101
43
0
9
46
1.36
97481427--97481473
20
2.3
21
82
10
62
36
4
0
59
1.17
97481442--97481488
17
2.6
18
80
10
51
46
0
0
53
1.00
97486495--97486564
34
2.1
34
100
0
140
27
14
20
38
1.91
97493535--97493579
22
2.0
22
87
8
65
35
2
2
60
1.22
97496410--97496452
19
2.3
18
84
11
52
25
2
2
69
1.12
97496460--97496512
14
3.7
15
69
25
51
54
5
0
39
1.24
97497076--97497110
11
3.2
11
100
0
70
54
0
0
45
0.99
97506634--97506707
24
3.0
25
78
9
62
68
2
4
24
1.19
97506974--97507014
21
2.0
21
90
0
64
36
2
9
51
1.48
97512067--97512102
6
6.0
6
93
0
63
69
13
16
0
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97516751--97516814
29
2.1
31
83
11
80
35
0
3
60
1.12
97516792--97516816
8
3.1
8
100
0
50
24
0
0
76
0.80
97517231--97517264
17
2.0
17
100
0
68
64
0
17
17
1.29
97519536--97519587
25
2.1
25
100
0
104
44
5
23
26
1.76
97520483--97520548
32
2.1
32
100
0
132
37
6
15
40
1.72
97524965--97525044
27
3.0
27
76
10
83
30
18
15
36
1.92
97534556--97534636
41
2.0
42
82
7
103
20
29
24
24
1.99
97535438--97535463
6
4.3
6
100
0
52
53
15
15
15
1.73
97538862--97538970
54
2.1
52
92
3
182
31
3
2
62
1.27
97543071--97543210
70
2.0
70
100
0
280
22
7
35
34
1.82
97558763--97558807
21
2.1
21
83
4
54
31
8
13
46
1.74
97559343--97559403
29
2.1
30
90
9
99
26
4
11
57
1.54
97565388--97565464
32
2.4
32
80
0
91
44
6
24
24
1.77
97569897--97569973
32
2.4
32
80
0
91
44
6
24
24
1.77
97570276--97570322
15
3.1
15
87
0
67
17
68
6
8
1.37
97570273--97570336
21
3.0
21
83
0
83
15
68
6
9
1.36
97570276--97570328
15
3.5
15
86
0
61
15
67
7
9
1.39
97570366--97570405
15
2.6
16
84
11
57
20
5
47
27
1.70
97577258--97577305
4
12.5
4
76
24
50
22
2
0
75
0.91
97580561--97580670
54
2.0
54
96
0
202
20
22
15
40
1.90
97591490--97591654
51
3.0
57
81
12
216
32
14
24
28
1.94
97591536--97591657
51
2.4
51
97
0
226
33
13
23
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97598172--97598285
58
2.0
58
91
0
183
33
14
24
27
1.95
97602606--97602684
25
3.2
25
75
8
81
15
25
22
36
1.93
97602606--97602701
25
3.9
24
78
4
77
17
25
22
34
1.96
97613190--97613407
46
4.8
45
80
6
199
26
20
31
22
1.98
97613190--97613401
92
2.3
90
82
4
237
26
20
31
22
1.98
97623325--97623356
16
2.0
16
93
0
55
34
18
0
46
1.49
97623566--97623833
50
5.3
50
80
2
295
30
25
16
26
1.97
97627265--97627331
34
1.9
35
84
3
91
44
11
10
32
1.75
97627300--97627339
14
2.9
14
84
0
53
42
15
7
35
1.75
97627496--97627677
101
1.8
101
88
0
274
30
24
18
26
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320