genome.fa.s12.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  106  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34321521--34321758	81	2.9	81	76	3	228	30	7	19	41	1.80
34321521--34321773	54	4.6	54	76	5	222	30	7	20	40	1.81
34321752--34321908	27	5.8	27	86	0	224	39	7	22	29	1.82
34321724--34321909	54	3.4	54	79	4	214	38	7	22	31	1.82
34321723--34321933	81	2.6	81	83	0	278	37	7	22	33	1.81
34321606--34321921	27	11.7	27	81	3	188	33	6	21	37	1.80
34329681--34329938	120	2.2	119	81	6	292	26	20	26	27	1.99
34329681--34329905	40	5.7	40	88	3	296	25	20	26	27	1.99
34337698--34337844	40	3.7	40	91	4	219	25	21	27	25	1.99
34337713--34337844	40	3.3	40	94	3	223	24	21	28	26	1.99
34337713--34337867	80	2.0	78	86	7	215	25	20	27	26	1.99
34351552--34351721	92	1.8	93	89	3	272	30	26	20	22	1.99
34351547--34351718	46	3.7	46	74	16	167	30	25	20	23	1.98
34352135--34352192	29	2.0	29	86	0	80	31	25	6	36	1.83
34354326--34354481	43	3.7	43	85	2	181	33	23	14	28	1.94
34358174--34358349	27	6.5	27	82	2	192	30	27	15	26	1.96
34367927--34368239	40	7.8	40	92	0	502	29	20	27	23	1.99
34375660--34375847	40	4.7	40	95	0	331	31	20	26	21	1.98
34382392--34382614	40	5.6	40	85	3	236	26	27	21	24	1.99
34382546--34382623	40	1.9	41	82	10	97	26	28	21	23	1.99
34386271--34386498	40	5.7	40	97	0	420	21	27	20	31	1.98
34389454--34389641	40	4.7	40	96	0	340	21	27	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34398706--34398893	40	4.7	40	96	0	340	21	27	20	31	1.98
34406591--34406813	40	5.6	40	85	3	236	26	27	21	24	1.99
34406745--34406822	40	1.9	41	82	10	97	26	28	21	23	1.99
34412932--34413080	42	3.5	43	76	9	126	28	24	20	26	1.99
34418008--34418092	25	3.2	25	64	23	66	36	15	24	23	1.93
34417984--34418245	54	4.9	54	87	3	348	36	17	24	22	1.95
34420398--34420434	18	2.1	18	100	0	74	27	0	21	51	1.48
34425697--34425763	31	2.2	31	97	0	125	53	28	0	17	1.44
34427802--34427984	40	4.6	39	78	9	183	24	20	27	27	1.99
34449671--34449712	22	1.9	22	85	9	59	38	4	19	38	1.73
34449667--34449719	22	2.3	23	78	18	58	33	9	18	37	1.83
34451228--34451421	47	4.1	47	89	0	280	32	11	29	26	1.91
34451257--34451328	22	3.1	22	64	24	58	33	13	29	23	1.93
34451302--34451377	23	3.2	25	62	24	63	28	13	34	23	1.92
34451391--34451577	48	3.8	48	86	8	277	36	6	26	31	1.82
34451392--34451577	100	1.9	96	89	6	284	36	6	26	30	1.82
34451740--34451767	13	2.2	13	100	0	56	25	14	39	21	1.91
34451754--34451844	37	2.5	37	90	0	137	24	16	29	29	1.96
34454423--34454455	17	1.9	17	88	11	50	18	33	15	33	1.92
34459730--34459811	41	2.0	41	97	0	155	35	7	23	34	1.82
34469498--34469673	50	3.5	49	77	7	158	24	18	28	28	1.98
34469491--34469684	49	3.9	49	75	6	167	24	19	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34475926--34475959	16	2.1	17	88	5	52	32	17	0	50	1.47
34476139--34476268	43	3.1	43	80	4	183	33	28	13	25	1.93
34476125--34476262	43	3.3	42	80	5	161	34	27	13	23	1.93
34479092--34479259	46	3.6	46	75	12	139	29	19	28	22	1.98
34491214--34491397	40	4.6	40	91	2	282	23	22	27	26	2.00
34491211--34491397	79	2.3	80	92	2	315	24	22	26	26	2.00
34491210--34491420	79	2.7	79	87	7	304	25	21	26	26	2.00
34496624--34497251	48	13.0	48	94	0	1049	31	25	6	36	1.82
34500677--34500776	28	3.6	27	74	6	83	29	30	18	23	1.97
34500677--34500806	57	2.3	57	84	6	158	28	28	19	23	1.98
34500705--34500804	28	3.6	27	76	10	85	30	27	20	23	1.98
34500816--34500971	40	3.9	40	97	0	285	25	26	21	26	2.00
34502359--34503076	48	15.0	48	93	1	1169	31	25	6	36	1.82
34508226--34508295	25	2.8	25	85	8	81	38	24	18	18	1.93
34509602--34509719	37	3.4	37	70	21	117	38	4	5	52	1.43
34509627--34509740	31	3.5	30	70	18	93	38	5	4	51	1.44
34509615--34509768	68	2.2	68	89	5	240	39	4	4	51	1.43
34515869--34515942	31	2.4	31	95	0	130	25	31	27	16	1.96
34523828--34523875	17	3.1	17	74	17	50	37	2	25	35	1.68
34539810--34539877	28	2.7	23	74	20	64	17	5	32	44	1.73
34539783--34539862	28	2.8	28	90	1	124	17	3	32	46	1.66
34543791--34544026	48	4.9	48	81	7	264	27	17	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34543801--34544026	95	2.4	96	84	3	305	27	18	28	25	1.98
34548932--34549044	27	4.2	26	84	9	138	19	23	21	35	1.96
34548931--34549037	55	2.0	54	88	5	162	20	24	19	35	1.96
34552738--34552811	26	2.8	27	85	4	71	39	25	5	29	1.78
34552751--34552813	26	2.4	26	92	5	101	34	28	9	26	1.88
34552916--34553025	28	4.0	28	95	1	179	18	24	20	36	1.95
34552916--34553025	55	2.0	55	91	3	177	18	24	20	36	1.95
34556231--34556385	42	3.7	42	66	12	102	27	16	25	29	1.97
34560103--34560280	27	6.6	27	77	6	137	30	28	15	25	1.96
34560103--34560280	54	3.3	54	78	7	164	30	28	15	25	1.96
34578284--34578546	40	6.6	40	87	3	316	26	27	20	25	1.99
34583742--34583802	31	2.0	31	96	0	113	45	0	8	45	1.33
34586744--34586783	21	1.9	21	85	10	55	35	17	2	45	1.62
34596081--34596151	35	2.0	35	91	0	115	29	8	15	46	1.75
34613677--34613893	40	5.5	40	90	2	296	22	23	29	24	1.99
34615651--34615755	53	2.0	53	98	0	201	34	22	13	29	1.92
34627177--34627491	47	6.7	48	71	14	183	27	16	31	24	1.96
34627217--34627440	92	2.4	95	77	15	223	29	17	30	22	1.97
34627312--34627439	50	2.6	48	85	6	161	28	17	31	21	1.97
34627177--34627486	97	3.3	94	75	11	253	28	16	30	24	1.96
34628836--34629011	46	3.8	46	77	14	191	21	20	28	29	1.98
34628833--34629004	93	1.8	93	92	2	292	22	20	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34639708--34639940	49	4.7	50	77	4	247	24	18	27	30	1.98
34651373--34651411	19	2.1	19	85	9	53	46	7	10	35	1.67
34652118--34652248	45	3.0	45	83	7	155	26	27	19	25	1.99
34653051--34653145	47	2.0	46	95	2	172	43	14	13	28	1.84
34660746--34660775	14	2.2	14	94	5	53	33	6	20	40	1.78
34676159--34676518	48	7.7	47	73	14	273	28	16	30	24	1.97
34676159--34676422	92	2.8	92	87	3	352	28	16	29	25	1.97
34676162--34676514	140	2.5	139	80	10	384	28	16	30	24	1.97
34676159--34676469	92	3.3	92	84	6	326	27	16	30	25	1.97
34677880--34677943	27	2.4	27	72	0	65	37	25	17	20	1.93
34677924--34678037	27	4.2	27	83	0	138	24	19	19	36	1.94
34677927--34678041	54	2.1	53	88	4	176	24	20	18	37	1.94
34678019--34678281	27	9.8	27	81	3	307	29	7	22	41	1.81
34677966--34678280	81	3.9	80	83	5	280	28	9	21	40	1.85
34677952--34678280	54	6.1	54	76	9	264	28	10	20	40	1.86
34682394--34682570	40	4.4	40	89	2	259	22	22	30	24	1.99
34682797--34682840	22	2.0	22	82	8	54	31	11	13	43	1.80
34703348--34703408	22	2.7	24	73	21	67	22	24	16	36	1.94
34703369--34703426	23	2.6	22	77	17	66	24	22	18	34	1.96
34703348--34703420	23	3.3	22	75	19	71	23	23	17	35	1.95
34712450--34712530	43	1.9	43	82	2	101	25	16	25	32	1.96
34713674--34713760	42	2.1	42	91	0	138	17	24	40	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34725649--34725871	40	5.6	40	89	4	292	25	21	27	26	1.99
34729462--34729584	46	2.6	46	83	7	133	23	29	18	28	1.98
34740661--34741064	55	7.6	55	74	13	319	22	24	17	36	1.95
34740929--34741061	54	2.4	58	79	10	154	21	21	19	37	1.94
34740673--34741073	210	1.9	210	90	0	642	23	23	16	36	1.94
34741210--34741296	44	2.0	44	81	4	104	24	25	12	37	1.90
34745099--34745330	49	4.7	49	82	2	275	25	19	28	27	1.99
34745104--34745330	99	2.3	100	84	2	296	25	19	27	27	1.99
34747691--34747873	40	4.6	40	87	4	244	24	20	27	27	1.99
34751566--34751703	50	2.7	50	76	5	143	28	18	26	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320